serinc1 (serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084)


Basic Information

Item Value
gene id serinc1
gene name serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35448642 ~ 35460339 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255393.3
CTGCTTAGTAAACACACCGCGTCCATCTTCAGACATTTGCTCATACACATCCCTCCCGCAGGAGAGCAAAGATGGGCTCTGTTCTCGGGCTGTGCTCTATGGCCAGCTGGATCCCCTGCCTTTGTGGCAGTGCTCCTTGCCTGCTGTGCAGATGTTGCCCAAGTGGAAACAACTCCACTGTAACCCGACTGATTTATGCCTTCTTCATGCTTATGGGAGTGGGCATCGCCTGCATCATGCTCATGCCTGGCATGGAAGGCCAGCTGAAGAAGATTCCAGGCTTTTGTGAAGGAGGAATGGGTTCTTCTATCCCAGGTGTAGAGGGTCATGTGAACTGTGATGTGCTGGTGGGCTACAAGGCAGTTTACCGTGTTTGCTTTGGCATGGCCATGTTCTTCCTTCTCTTCTCACTCCTCATGATTAAGGTCAAGAGCAGCCAGGATCCACGAGCTGCTGTTCATAATGGGTTTTGGTTCTTCAAGtttgctgctgccactgctatTACGGTCGGAGCATTCTTTATTCCTGAAGGCCCCTTTACAACTGTGTGGTTCTACATTGGGATGGCTGGTGCTTTCTGTTTCATTCTGATTCAGCTGGTGCTTCTAATTGACTTTGCTCACTCCTGGAACGAGTCATGGGTGGAGAAGATGGAGGAGGGAAACTCTCGTTGCTGGTACGCAGCGCTGCTCTCTGCCACGACTCTAAATTACGCCCTTTCATTGGTGTCCCTTGTCATGTTCTACGTGTACTACACTCACTCTGGCGGCTGCACAGAGAACAAAGCCTTCATCAGTGTCAACATGCTGCTGTGTGTGGGAGCCTCTGTCATGTCCATTTTGCCCAAGATTCAGGAGTCTCAGCCCCGGTCTGGCCTCCTGCAGTCCTCCATTGTTACCCTGTACACCATGTACCTGACCTGGTCTGCCATGACCAACGAGCCTGACCGCAAATGCAATCCAAGCCTGCTCGGCATTATTGGCCTGAACAGCACCAGCTCAGCTGGCAAGGACCAAGTAGTCCAGTGGTGGGATGCTCAGGGCATTGTAGGATTGATTCTGTTCCTCATGTGTGTTTTGTACTCCAGCATCCGCAACTCCAACAACACTCAAGTGAACAAACTCACCCTGACCAGCGATGAGTCTGCTCTGATCGAGGACGGCCCTGCTCCTGAGAATTTTGACGAGGGGGATAATTCCAACCGTGCCATTGATAATGAGAGAGATGGCGTCACATACAGCTACTCCTTCTTCCACTTCATGCTCTTCCTGGCCTCTCTTTACATCATGATGACTCTGACCAACTGGTACAGTCCTGACTCCAACTACGAGATGATGACCAGCAAATGGCCTTCTGTTTGGGTGAAGATGTCATCCAGCTGGATCTGTATCTGCCTGTATGTGTGGACCCTGGTGGCCCCACTGGTTCTCACTAACCGTGACTTCGACTGATGATCAAACTAGAAGAAAGCTCAGAGTGAACCTTGCCTGTCGTTATTGTGAATATCCACCTGTATAGGACGAGCAAGTGATGTCATATTGTAAATACCTGATGTCTGCGCATTCCCCCTGTGGTTGAGCTCTCCGGTTTGTTTTAACTATTGCATGTTATGTAGTGATATTTATTTGTGATGTATGTTATGAAAGGATGAATCTAAAAGACAGACCACAGTTTTCAAGGCGggattattatttacataaacaTCCCAAAGAAAAGTCAGGAGGGAGCTAACGTgtatacttaaaaaagaaaaaaaaaagtgttagttATTATTATGGATAAGCTTGTCCATATTGTTAATGTTCGCCATAAGTTTTGTTGTGGAGATGCAGCAACAACGCACATCATATTAGATCATAAACCATTGATTGTAATTTCCTATAGAATGGGCATAGTAATTCAGTGGTGCTGCTTTAGCATGAAAAGAATCAATTGCTGAGTAGAGGTTTAGATTTTCATgctttttttcctacataatGAATTCCATTTACACATGACATAGCTAGGCTATGATTAAAGATCATAGAGCTCATGTTGATGGTGATTCCATGTTGTTTTCAGTGGATGGATAATAACCGACTCCTTTCCCCGAAAGTGTTGCTGCTTGTGTTACCGTAATTGGTTTGTGCATGCTATCAGATTAACTCGGTCAGGCCTTTAGTTAGGACTGTAAAATGCCACAGTGCTAACCCTTTTGCAACTTGCACAGTTTAGTTGAGTTTTGAACTTTTTAATTCTTGTGTTGAAATGTTTTGCACTGATCCTTTTTTCTTTGAAACCCCATGTTGAGAATTGATGTATTATGATTTGATATCTGTAGTTTTCTTTTACACCGCTAAGGCATTTAGACGTGTTACCAGCCTGCAGACATTATTAGTCTAGTAGTTGCTGTTAAGTAATGTAATAgatgctgctgtgttttttttgtccttttgaCAAGTGCATTGTAAACTATCTCGTCttattcattaaaggtttaaaacCCCA

Function

symbol description
serinc1 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism and nervous system. Orthologous to human SERINC1 (serine incorporator 1).

NR:

description
PREDICTED: serine incorporator 1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23544 SERINC1_3; serine incorporator 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255393.3 True 2487 mRNA 0.45 10 35448642 35460339

Neighbor

gene id symbol gene type direction distance location
hddc2 hddc2,LOC107580122 coding upstream 628322 34816867 ~ 34820320 (+)
esco2 NA coding upstream 772700 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 823047 34597882 ~ 34625595 (+)
reps1 reps1,LOC107727647 coding upstream 877890 34552343 ~ 34570752 (+)
papola papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 1146975 34285824 ~ 34301667 (+)
gab3 gab3,LOC107557096 coding downstream 178008 35638347 ~ 35676321 (+)
LOC103040467 LOC108444278 coding downstream 347128 35807467 ~ 35810107 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 362857 35823196 ~ 35850191 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 416854 35877193 ~ 35923957 (+)
LOC103037324 NA coding downstream 481756 35942095 ~ 35964597 (+)
G23753 NA non-coding upstream 142509 35303972 ~ 35306133 (+)
G23748 NA non-coding upstream 243607 35204806 ~ 35205035 (+)
G23729 NA non-coding upstream 480400 34920873 ~ 34968242 (+)
G23727 NA non-coding upstream 531073 34917301 ~ 34917569 (+)
G23719 NA non-coding upstream 569662 34877293 ~ 34878980 (+)
G23817 NA non-coding downstream 2795 35463134 ~ 35467716 (+)
G23840 NA non-coding downstream 67589 35527928 ~ 35528159 (+)
G23842 NA non-coding downstream 83993 35544332 ~ 35544557 (+)
G23844 NA non-coding downstream 99748 35560087 ~ 35560322 (+)
G23860 mtmr8,LOC108444279,LOC107557116 non-coding downstream 289609 35749948 ~ 35797617 (+)
trdn NA other upstream 146295 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 1484134 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 1668739 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 1852931 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 2279250 33083642 ~ 33169392 (+)
LOC103040783 LOC108411309 other downstream 583092 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 789485 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 2128767 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 2468016 37928355 ~ 37933989 (+)
G24390 NA other downstream 2632635 38092974 ~ 38098324 (+)

Expression


Co-expression Network