hddc2 (hddc2,LOC107580122)


Basic Information

Item Value
gene id hddc2
gene name hddc2,LOC107580122
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34816867 ~ 34820320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255408.3
CCACAGTTGGTATCCGGGCTGACAGGGGGCGCTGCAGTTTATTGTGTGTGAATCTGTTGGGGGAGAAGCATGGAGAACATGCTGCAGTTCATGAAACTAGTAGGACAGCTAAAGcGCGTGCCACGCACCGGCTGGGTGTACAGGAACGTGCAGCATCCAGAGAGCGTCTCGGATCACATGTACAGAATGGCCATGATGGCATTAACAGTGCAGGACACTAGTGTTAACAGAGACAGGTGCGTGAAGATTGCTTTAGTCCACGACTTGGCTGAAAGTATTGTGGGGGACATTGCTCCAGCTGACAAAATTAGCAAGGCTGAGAAACACAGACGGGAAAAgGAGGCGATGGATCACATCACTGGTCTGTTGCGTGAGGATCTGCGTAAAGAACTGTACCAGCTGTGGGAGGAGTACGAGACCCAGTCCAGTCCTGAAGCCAGACTGGTAAAGGAGTTTGATCAACTAGAAATGATTCTACAAGCACACGAATATGAGGAGCTTGAGGGAAAACCAGGCAGACTGCAGGAATTCTTTGACTCAACTCAAGGACGGTTTCATCACCCAGATGTGTTGGCGCTTGTAAAGAGTCTGAATGAGGAGAGAGCTCAACACATGGCCAAAGCAGAAGAATCCAGCTCAAAGAATAATGGTGATCAAAAAAGCTCAAGCTCATCATGACCCTTTACCTGTGAAAACTTTTTATAACGGCTGTATGAAAGTCAGTATATCCTCGTCACTGatgatttgtattttaaaaaatcaccaGTGATTAACCACAAAGAACTAATACCATTTCTGTATACTGTCCTATGCATATCTCTGGGCACTCCAGGTCAATTTACTCTgatttgttttgattttttttttttagtaaaa

Function

symbol description
hddc2 Predicted to enable 5'-deoxynucleotidase activity. Predicted to be active in cytoplasm. Orthologous to human HDDC2 (HD domain containing 2).

NR:

description
HD domain-containing protein 2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K07023 K07023; putative hydrolases of HD superfamily

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255408.3 True 876 mRNA 0.45 6 34816867 34820320

Neighbor

gene id symbol gene type direction distance location
esco2 NA coding upstream 140925 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 191272 34597882 ~ 34625595 (+)
reps1 reps1,LOC107727647 coding upstream 246115 34552343 ~ 34570752 (+)
papola papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 515200 34285824 ~ 34301667 (+)
LOC103028909 NA coding upstream 532283 34277101 ~ 34284584 (+)
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding downstream 628322 35448642 ~ 35460339 (+)
gab3 gab3,LOC107557096 coding downstream 818027 35638347 ~ 35676321 (+)
LOC103040467 LOC108444278 coding downstream 987147 35807467 ~ 35810107 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 1002876 35823196 ~ 35850191 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 1056873 35877193 ~ 35923957 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding upstream 137070 34676018 ~ 34679797 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding upstream 149836 34663064 ~ 34667031 (+)
G23499 NA non-coding upstream 529972 34247837 ~ 34286895 (+)
G23462 NA non-coding upstream 769093 34046590 ~ 34047774 (+)
G23427 NA non-coding upstream 928998 33885462 ~ 33887869 (+)
LOC111196008 NA non-coding downstream 8516 34828836 ~ 34830350 (+)
G23719 NA non-coding downstream 56973 34877293 ~ 34878980 (+)
G23727 NA non-coding downstream 96981 34917301 ~ 34917569 (+)
G23729 NA non-coding downstream 100553 34920873 ~ 34968242 (+)
G23748 NA non-coding downstream 384486 35204806 ~ 35205035 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 852359 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 1036964 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 1221156 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 1647475 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 1735005 33076624 ~ 33081862 (+)
trdn NA other downstream 406478 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 1223111 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 1429504 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 2768786 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 3108035 37928355 ~ 37933989 (+)

Expression


Co-expression Network