LOC103028593 (LOC108258153,LOC108426258,LOC108444014,LOC107751776)


Basic Information

Item Value
gene id LOC103028593
gene name LOC108258153,LOC108426258,LOC108444014,LOC107751776
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34262996 ~ 34269700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255424.3
TATGTTGAAACAGCGGTGGAGCTGGTTAAATCAGTAGTGTGCGCTGCTGGAGCAGTTCCTGGACAGAGGCAGTTGCGGAAGTGGGTCAGTAAGAGTTGTGAAAGTGGAGAGCAGGATTATgttcttctcattttctttgaGGACAGCAGGTCGTTCACTGAGCACCAGCACACTGACCGTACCAAGATGATCTCAGCCCGTgtccagctgctgctggcctCATGGTTTTGTGTGTGCTCGGCTGAAGATTACTTTCTGGATGACCTGATTGGGCTGGGGAGACGGTTTGATGGTATAGGGGGCTTAAGCGGAGGAGGGGCCACATCACGACTTCTGATCAACTATAAAGAGCCTTATCGGAGCCAAATACTGGATTACCTTTTCAAGCCAAACTTTGGAGCTTCACTACACATTCTCAAAGTGGAAATAGGTGGTGATGCCCAAACCACAGatggTACAGAACCATCACATATGCACAGTGAGAAAGACGAGAATTATTTCCGTGGTTACGAGTGGTGGCTAATGAAGGAAGCCAAGAAGAGGAACCCAAACATCACTCTAATTGGCCTGCCCTGGGCGTTCCCTGGATGGATTGGTAATGGGACCAACTGGCCATACACCTTTCCAGACATCACTGCTAACTATGTGGTGTCTTGGGTCATTGGGGCAAAACATTATCATGACCTTGATATTGAGTACATAGGGatATGGAATGAAAGGGACTTTAATGCAAAGTACATCACAGTGCTTCGAGACGCATTAGACAGAGCTGGTTTAAAAGATGTCAGTATTATAGCGGCAGATGGGAACTGGGATATTTCAAATGCTTTGCTGACTGATCCATATCTCAATGAAGCTGTTGGTGTGATTGGAGTTCACTACCCAGGCACCACTACAGTGAAGGAGGCTTTGCTGACTGGGAAGAGGCTCTGGTCCTCTGAGGATTACAGCACATTTAATAATGACATTGGTGCCGGGTGCTGGGCTCGTATTCTGAACCAGAACTACATCAACGGCAGGATGACCTCCACTATTTCATGGAATCTGATAGCAAGTTACTATGAAGATCTGTCTTTTGGCGGTGATGGTTTGATGACAGCAGAAGAGCCGTGGAGTGGGAACTATGTGGTGGAATCCCCAATATGGATAACTGCTCACACCACTCAGTTCACACAACCCGGCTGGACATATCTGGACACTGTGGGGCATCTTGCTCAGGGTGGAAGTTATGTCGCATTAACTGATGGCAAAGGGAATCTGACCGTTGTAATAGAGACCATGAGTCATAATCACTCTCAGTGCATAAGGCCTGCACTTCCACCTTACAGTGTTTCCCCTCAGACGGCAACTTTTCGGCTCAAAGGTTCCTTTGCAGCACTCACTGAGCTACAGCAGTGGTACACAAAATTtgattttgagaccaaaaaagaCGTGCTGTTTAAGAAGACTAACTCCATTAAGATTCAAAATGGATATTTTAACTTGACTTTGGATGTTGATGAGGTTTATACAATTACATCAGTCTCCGGTGGGCAAAAAGGCCTTTACCCTGATCCCCCTATATCTGCACCTTTCCCCAGGAAATATTTTGATGACTTCAATGTCCGTAACCCCCCCTTCTCCGAGGCTCCATATTTTGCTGATCAAACCGGAGTGTTTGAGTATTTCAATAACCTCACAGATCCAGGGCCACATGCCTTCACCTTGCGCCAGGTTGTTACCCAGCGGCCAGTTACATGGGCTTATGATGCTGACCAGACAATCAGTGTTGTAGGAGACCATAACTGGCAAGATCTGACTGTGTCCTGTGACATCTACATTGAAAATATGAATGGAGGTGTTTTCATTGCAGCCAGGGTGGATCAAGCAGGAGAATCGGTCAAGAATGCCATGGGTGTCTTTTTCTGGGTATTTGCAAATGGAACATACAAAGTGACCAATGATATAGGTGGAAAGAAAGTTCTTGCTGAGGGATTATCAGGCACACAACCTGGTATATGGCATACGCTGACTCTCACTGTAAAGgGGTATTTTGCTTTTGGGATGATGAATGGTTATCCTCTCTGGAAGAATGCTGTGGTTCTTCAACCAAAAAATGGCTGGGCTGCAATAGGGACCCACACCTATGAATTTGCACAGTTTGATAACTTTCTGGTGAATGCAGAGACTGATCTTCATTAACCGTGAAAGACACTCAGGATGTTCCTGCAAATGAGCTTACGAATATGAATTTTTTATCACTGTTAAATCAATGTTTACAGAATTCTGAATCACTTGATCTTGATCAAATGtatgcgtgtatgtgtgtgtgtgtgtgaatttgtgAAAATGTAATGATTGTTTTATAAAGGGACAAATCATGATAAAGATTTTACAATATAGGAATTGTTGTAGTTGCCTAATTTACACTGCCtactaattgttttatttaaaactgataaGCACTTACTGTGTGTTACATGTGTGAAATGTAAACAGAGGTGTCAATTAACAAAATACAATTACTTTttatctta

Function

NR:

description
PREDICTED: galactocerebrosidase-like

GO:

id name namespace
GO:0006683 galactosylceramide catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004336 galactosylceramidase activity molecular_function

KEGG:

id description
K01202 GALC; galactosylceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255424.3 True 2516 mRNA 0.44 17 34262996 34269700

Neighbor

gene id symbol gene type direction distance location
LOC103029743 zdhhc14,LOC108444016,LOC107747944,LOC107679689,LOC107742328,LOC107560202,LOC108258056 coding upstream 17878 34206343 ~ 34245118 (+)
LOC103034505 LOC108444017 coding upstream 69961 34096489 ~ 34193035 (+)
LOC103030598 cldn20,LOC103030598,LOC107679670,LOC105017817 coding upstream 193669 34051253 ~ 34069327 (+)
LOC103030910 LOC108444009 coding upstream 216611 33983194 ~ 34046385 (+)
ndufaf7 ndufaf7 coding upstream 464222 33789582 ~ 33798774 (+)
LOC103028909 NA coding downstream 7401 34277101 ~ 34284584 (+)
papola papola,LOC107560206,LOC107747941,LOC107678672 coding downstream 16124 34285824 ~ 34301667 (+)
reps1 reps1,LOC107727647 coding downstream 282643 34552343 ~ 34570752 (+)
scara3 scara3 coding downstream 328182 34597882 ~ 34625595 (+)
esco2 NA coding downstream 400538 34670238 ~ 34675942 (+)
G23462 NA non-coding upstream 215222 34046590 ~ 34047774 (+)
G23427 NA non-coding upstream 375127 33885462 ~ 33887869 (+)
G23367 nkx2-4 non-coding upstream 608007 33650637 ~ 33654989 (+)
G23356 NA non-coding upstream 683474 33579267 ~ 33579522 (+)
G23349 NA non-coding upstream 694054 33568394 ~ 33568942 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding downstream 393364 34663064 ~ 34667031 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding downstream 406318 34676018 ~ 34679797 (+)
LOC111196008 NA non-coding downstream 559136 34828836 ~ 34830350 (+)
G23719 NA non-coding downstream 607593 34877293 ~ 34878980 (+)
G23727 NA non-coding downstream 647601 34917301 ~ 34917569 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 298488 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 483093 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 667285 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 1093604 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 1181134 33076624 ~ 33081862 (+)
trdn NA other downstream 957098 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 1773731 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 1980124 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 3319406 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 3658655 37928355 ~ 37933989 (+)

Expression


Co-expression Network