G58711


Basic Information

Item Value
gene id G58711
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14766659 ~ 14773773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU66854
CTTGATATTGGCTGCCAATAGAGCATCTACTAGCTTATGATAGTAGTTAAGTCCAGCTTCATTAATTTCCCTGTTTGTTCCATCTGGCATAATTCTGGGCCATGAAATAGAAAACCGGTAGTGGTTGACCCTCAGTGTTTTAAGACTATTGATATCCTCAGCGAGCTTGTTGTAGCTGTCACAGGCAATGTCACCATTTTCATCCTGCGATATCTTTAAAGCAGTGTGTGCAAATGTGTCCCAAATACTGAGACCTTTTCCATCTGCTCTCCAGGCGCCCTCTATCTGATATGAAGCTGTTGCTGTGCTCCATATAAATCCCTCTGGGAAATGTCCATATAACATTTCTTCCTCCACTGGCAGTGGAAAGCCATTATTTCTCATTATATCAAAGTAAAGGTGAGCTGAGCGTTTTGGAGTTCTCGGCCGATTTGAATCTTTAAAGTTCACATGGTGAAGTCCATAGCCAACAGTGTAGCCATTCAGCCACTCAAAGGAGTCCATCAGAGAGCTAGCAATGTAACCCTTAATACGTACTCCATCCAGGTTGTGCGCTTTAAGAGCTTCATCAACATAGGTCTTCAGGAAGAATATTCGATCAGTGTCATCAACCGTTATGTCAGTGCCTGTAGCCACACCATTTTCCGTTATATAAATCTCAGGGTCTCCATACTCTTCCTTTAGCCAGTTAAGAAGTCTCCTGAGTCCCCAAGCAACAGCCTTCTGGTCATTAACAGCGGTATTTTCAGAGCCATCTGCATCGTCCTTCTCAACATCCTGATCAGTCTCATAAGACACAATATTAAGTCTGCTGGTCACATGGCGCACGACTTTGGTAGTGTATGTGTTAAGACAGAATACATCAGCTGTTCCTTGGATAAAGGCTTTGTCTTCATCAGTAAAAGAAGGCAAACGGGATTCTGTCAAGCGTTGAAGTTCACTCTTGTCGCCAACCTGCCACTTCATGGCATCAGGGTAGTCACCATTTTTAAAGATGGGATGTGCAAACCAGCCTAGTTGGAACTGAAGGGCTCGATCAGCAGCCACCACCTCTCGAGGGATGTTGATGTCCAGGGGTTCTGCCCATTCAGCATTTAGACTAATGGATACCAGACCTCCTTGAGATGCCCTGTATTTATCATCATAGGTGTGGTACGCTTGTGCATGAGCTTTTAGGAGGTTGTGTGCAACCCTGTATGGAGCATCTCCGGGTTGCTTCACGTTAGGTGGAATCTGACCTAATCCATATCCCAACCATGCAATTGTCTGGGGTTCATTAAATGTGATCCAAAACTTCACCCTGTCTCCAAATGTTGCATAACAGAAGTCACAATATTCATTGAATATGTTAATCAATTCAGGGTTGTCCCAACCGTTAATGTTCTGTAAAGCCTGTGGCAGGTCCCAATGGTAGAGAGTCACCATGGGTGTGATATTGTTTGCTATAAGACGGTCTATGAGTCTGTTGTAGTAGTCCACCCCCTTCTGGTTAAGAGAAGATTTATAGCCACTGGGAAAAATTCGAGACCATGACAAGGAAAATCTATAAGTCTTCACTTTTAGGGCTCTCAACATGTGTAGATCCTCATCTATTTTATTGTAGCTGTCACATGCAACATCACCATTGTCATTGTTTGGGATATTACCAGGATTTTGAGTAAAATTATCCCAAATACTTGGTCCTTTTCCATCTGCATTCCAGCCACCTTCAACCTGATATGCTGAAGATGAGACACCCCAATGAAATCCCTCTGAAAATGTTCCATAGTGATAAAGCTGTCTCTCAAACTTGGTCTGAGGGGAGAACTTTTCCCAAACAACCTTGGATTTTGAAGGAACTTCGGATGGCGGCAGACTAGGGAGTCTTGTGCTCTCAATTTTATTTCCATAGATTTGCATCTCAGGGCTTGCTGCAGTCTCAGCAAATCCGTTACTCTCAATCACCTTTGAATAGTAATATGCTGATGCTTTGGGGGTTCTTGGCCTGTCAGGATCTTCAAAGTCCACATAGTGCAATCCAAATCGTTGACTGTAGCCTTGAGGACCCTCAAAACCATCCAAAAGAGACTGGACTGTAAACCTCTGGACGACAACATCATCCAAATGCACAGCTTTCATTGCTTCATTAATGTACGTTTTGAGATAGTCGACACGCTGAGTGTCATTGAGCACATCACCAATGTACTCAGTGGGCATTCCATTTCCTGTGATATAGATAGGCACCTTTGTTATGGATGTGTACTCTAAAAAGATGTAGTTCAATAACCGCCGAAGTCCCCACGGAACAGACTGGATCTGATCAGAAGCTGTGGAGGGCCATGTGGGGTCAATATGAGCCTCGAAGTCTCCAACATTATTTGGTCCAGCATCACAGCTATTCAAGCTCTCACTAATCAGTCGGGAAGTGTGGTGGTTAAGTCCGAAGAAATCAGCTGTGCCTCGGATTCTTTGTTTTTCAGCCTCAGTGAAGACAGGGAGTCTTGCCAGCTCTTCACCACAGAAATCTTTCTTTTTCTCTATTTGTTCCTTCAGCACGGCTGGATAGTCTCCATCTACAAATATGGGGTGAGCAAACCAGCCCAGCATGAAGTTCAGATAACGCTCAGCTGCTGCTACATCCTGATCACTTGAGGGATTCCTCGGCTCTGCCCAATCGGAGTTAAGAGCAATGCCCACTTTTCCACCATGCAGTTTCCTGTATTTATCGTTATAAATATGCCAGGCTTCAGCGTGAGATTTCAGAATATTGTGCGTCACCTTGTAAGAGGCTATTATTGGGTCTTTCATACTTGGGGGATGTTCCCCTGTTCCATACCCCAAGTTGCTCACTACCCAGGGGTTGCCAAAGGTGATCCATGTTTTGACTCTGTCTCCATAACGAGAGAAGCAAAAGTCAGAAAATTCTTTGAAAGCTTCCACAATAGAGTCATTAATCCAGCCGCCTGAGTCCTGCAGAGCTTGGGGAAGATCCCAATGATGCAGGGTAACAGTGGGCTCGACGCCTGATTGTAGAAGTGTGTTAATCATCTTGTCATAATAAGCAGCCCCCTTTTCAACCAAACTTTCTTTGCGTCCAGTGGGGAAAATGCGAGCCCAGGAAATTGAGAACTGATAATTCGGTGCCATCATGCCCCTTAGCAGATACACATCGTAGTCCACCTTGTGATAACTATCACAGGCCAAATTAGTGGTCTGGTTGTCAAAGACGTGACCCTCATGGCTAAAACGATCCCATATGGTCTCACCCTTCCCGTGTTCAGCCCATCCACCCTCCACTTTGAAACTCTCACTGGAGACGGACCATTCAAAATCAACTGGGAATGAGCCACTCAGGAACTCATCGCGCTCAGCTTCGGTTTGACTCTTGAATTTCTCCCAGACCTTCTGGTATGAGAATGCAGAAGCTGATTTCTGATGGACAACAGTCTTGGTATTTTCCTTCTGCAATCTTTTTGAGTGTTTCTTCTTGATCTAGCTTCTCAAAAAGGTGTGTGATGTCACAGCCCATGATGTGAAGATCGTTGTTCTGTAAAACTCCAAGAATTGTAGTAAGTGGCTGGAAATGATTTTCATATCCATCACAGTCCTTGACTGTCAACTGATACATAAGGATTGACTTTTGACCACTGACAATCTGTAACGTCCTCAATTCCTCGGTAAGAGCTGCCTGCAAATTGCAGTTGTACAGCATGTGTATAGAGAGGAAATCCACATATGCCATGATTTTTGACCCCATCTGAGAAATGAAGTTAATATCACTGGCTCTGATCCCAAGAGACATTGTAAACATTTGCATGGGACTGGAGAGCATTTTGAAGTTGCACTTCATTATGTAGCTCATGCAGGTGACTGAACGTGACAAACGTGTCCACAAGATCCCTAAATGTATTGAACACAAATCCTGCATACTGCTCAAACAGCTGCACCAGTAATGGATTCTCCCAGTCTCCATATCTGGCTCTGAAGGGTTCTGGTACAGCAGAGCGGTGGAGAACCAGCAGAGGTTTGATACCCGATTCAGTCAACTGCTGCACAAGCGTCTTGTAGCACGTCACAGTGTCTTCATGTGGTCGGTTAGAGTCACCTGTGGGAAGGATGCGAGACCAGGACAGGTGAACTTTAAAGTGTGTCACCCCTCTGCTCTGAAGGTACAAGAAGTAGTCTCTGGATTGTTGTGGCAGTGGACCTCCGCAGTTAAATGCATTGTCTTCATCTGAAGATCCCAAAGTTTGGCCAGTGGTCAGTGGGCCTGCAAGTAACATGAACTCCTGTTGCTCTGCATTACTGGAGCTCCAAAAAACAGCCAACAAACCAAGAAAAAGAAATCCTTCTAGGACCTTCATCGTGACAGTGTTGCAAGTGGGGAAGAGTTCTTTATAACCACCACTGCTAATCTAATAGTGAGGCATACATATCAGTGTTACAATCATGCAGCTTA
>TU66856
AAACCATTGTTAACATACCTTTAAGAGCTTCATCAACATAGGTCTTCAGGAAGAATATTCGATCAGTGTCATCAACCGTTATGTCAGTGCCTGTAGCCACACCATTTTCCGTTATATAAATCTCAGGGTCTCCATACTCTTCCTTTAGCCAGTTAAGAAGTCTCCTGAGTCCCCAAGCAACAGCCTTCTGGTCATTAACAGCGGTATTTTCAGAGCCATCTGCATCGTCCTTCTCAACATCCTGATCAGTCTCATAAGACACAATATTAAGTCTGCTGGTCACATGGCGCACGACTTTGGTAGTGTATGTGTTAAGACAGAATACATCAGCTGTTCCTTGGATAAAGGCTTTGTCTTCATCAGTAAAAGAAGGCAAACGGGATTCTGTCAAGCGTTGAAGTTCACTCTTGTCGCCAACCTGCCACTTCATGGCATCAGGGTAGTCACCATTTTTAAAGATGGGATGTGCAAACCAGCCTAGTTGGAACTGAAGGGCTCGATCAGCAGCCACCACCTCTCGAGGGATGTTGATGTCCAGGGGTTCTGCCCATTCAGCATTTAGACTAATGGATACCAGACCTCCTTGAGATGCCCTGTATTTATCATCATAGGTGTGGTACGCTTGTGCATGAGCTTTTAGGAGGTTGTGTGCAACCCTGTATGGAGCATCTCCGGGTTGCTTCACGTTAGGTGGAATCTGACCTAATCCATATCCCAACCATGCAATTGTCTGGGGTTCATTAAATGTGATCCAAAACTTCACCCTGTCTCCAAATGTTGCATAACAGAAGTCACAATATTCATTGAATATGTTAATCAATTCAGGGTTGTCCCAACCGTTAATGTTCTGTAAAGCCTGTGGCAGGTCCCAATGGTAGAGAGTCACCATGGGTGTGATATTGTTTGCTATAAGACGGTCTATGAGTCTGTTGTAGTAGTCCACCCCCTTCTGGTTAAGAGAAGATTTATAGCCACTGGGAAAAATTCGAGACCATGACAAGGAAAATCTATAAGTCTTCACTTTTAGGGCTCTCAACATGTGTAGATCCTCATCTATTTTATTGTAGCTGTCACATGCAACATCACCATTGTCATTGTTTGGGATATTACCAGGATTTTGAGTAAAATTATCCCAAATACTTGGTCCTTTTCCATCTGCATTCCAGCCACCTTCAACCTGATATGCTGAAGATGAGACACCCCAATGAAATCCCTCTGAAAATGTTCCATAGTGATAAAGCTGTCTCTCAAACTTGGTCTGAGGGGAGAACTTTTCCCAAACAACCTTGGATTTTGAAGGAACTTCGGATGGCGGCAGACTAGGGAGTCTTGTGCTCTCAATTTTATTTCCATAGATTTGCATCTCAGGGCTTGCTGCAGTCTCAGCAAATCCGTTACTCTCAATCACCTTTGAATAGTAATATGCTGATGCTTTGGGGGTTCTTGGCCTGTCAGGATCTTCAAAGTCCACATAGTGCAATCCAAATCGTTGACTGTAGCCTTGAGGACCCTCAAAACCATCCAAAAGAGACTGGACTGTAAACCTCTGGACGACAACATCATCCAAATGCACAGCTTTCATTGCTTCATTAATGTACGTTTTGAGATAGTCGACACGCTGAGTGTCATTGAGCACATCACCAATGTACTCAGTGGGCATTCCATTTCCTGTGATATAGATAGGCACCTTTGTTATGGATGTGTACTCTAAAAAGATGTAGTTCAATAACCGCCGAAGTCCCCACGGAACAGACTGGATCTGATCAGAAGCTGTGGAGGGCCATGTGGGGTCAATATGAGCCTCGAAGTCTCCAACATTATTTGGTCCAGCATCACAGCTATTCAAGCTCTCACTAATCAGTCGGGAAGTGTGGTGGTTAAGTCCGAAGAAATCAGCTGTGCCTCGGATTCTTTGTTTTTCAGCCTCAGTGAAGACAGGGAGTCTTGCCAGCTCTTCACCACAGAAATCTTTCTTTTTCTCTATTTGTTCCTTCAGCACGGCTGGATAGTCTCCATCTACAAATATGGGGTGAGCAAACCAGCCCAGCATGAAGTTCAGATAACGCTCAGCTGCTGCTACATCCTGATCACTTGAGGGATTCCTCGGCTCTGCCCAATCGGAGTTAAGAGCAATGCCCACTTTTCCACCATGCAGTTTCCTGTATTTATCGTTATAAATATGCCAGGCTTCAGCGTGAGATTTCAGAATATTGTGCGTCACCTTGTAAGAGGCTATTATTGGGTCTTTCATACTTGGGGGATGTTCCCCTGTTCCATACCCCAAGTTGCTCACTACCCAGGGGTTGCCAAAGGTGATCCATGTTTTGACTCTGTCTCCATAACGAGAGAAGCAAAAGTCAGAAAATTCTTTGAAAGCTTCCACAATAGAGTCATTAATCCAGCCGCCTGAGTCCTGCAGAGCTTGGGGAAGATCCCAATGATGCAGGGTAACAGTGGGCTCGACGCCTGATTGTAGAAGTGTGTTAATCATCTTGTCATAATAAGCAGCCCCCTTTTCAACCAAACTTTCTTTGCGTCCAGTGGGGAAAATGCGAGCCCAGGAAATTGAGAACTGATAATTCGGTGCCATCATGCCCCTTAGCAGATACACATCGTAGTCCACCTTGTGATAACTATCACAGGCCAAATTAGTGGTCTGGTTGTCAAAGACGTGACCCTCATGGCTAAAACGATCCCATATGGTCTCACCCTTCCCGTGTTCAGCCCATCCACCCTCCACTTTGAAACTCTCACTGGAGACGGACCATTCAAAATCAACTGGGAATGAGCCACTCAGGAACTCATCGCGCTCAGCTTCGGTTTGACTCTTGAATTTCTCCCAGACCTTCTGGTATGAGAATGCAGAAGCTGATTTCTGATGGACAACAGTCTTGGTATTTTCCTTCTGCAATCTGAATGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU66854 False 4438 TUCP 0.45 10 14766659 14773773
TU66856 True 2921 TUCP 0.45 3 14767940 14771757

Neighbor

gene id symbol gene type direction distance location
CI01000009_14682045_14685381 NA coding upstream 81239 14681654 ~ 14685420 (+)
CI01000009_14659692_14664324 NA coding upstream 102326 14659179 ~ 14664333 (+)
CI01000009_14616605_14620028 NA coding upstream 146421 14615371 ~ 14620238 (+)
CI01000009_14595691_14611767 NA coding upstream 154090 14595436 ~ 14612569 (+)
CI01000009_14581261_14582899 NA coding upstream 183665 14580880 ~ 14582994 (+)
CI01000009_14857765_14859526 NA coding downstream 83940 14857713 ~ 14859636 (+)
CI01000009_14862429_14898325 SLC4A3 coding downstream 87959 14861732 ~ 14898549 (+)
CI01000009_14916323_14920716 NA coding downstream 142492 14916265 ~ 14920795 (+)
CI01000009_14925314_14952223 NA coding downstream 150848 14924621 ~ 14952571 (+)
CI01000009_14976078_14977321 NA coding downstream 201998 14975771 ~ 14977424 (+)
G58713 NA non-coding upstream 1980 14763822 ~ 14764679 (+)
G58686 NA non-coding upstream 45565 14720888 ~ 14721094 (+)
G58676 NA non-coding upstream 56519 14704479 ~ 14710140 (+)
G58572 NA non-coding upstream 90286 14610902 ~ 14676373 (+)
G58631 NA non-coding upstream 157318 14609006 ~ 14609341 (+)
G58695 NA non-coding downstream 2164 14775937 ~ 14777316 (+)
G58735 NA non-coding downstream 39243 14813016 ~ 14813280 (+)
G58736 NA non-coding downstream 39624 14813397 ~ 14813661 (+)
G58738 NA non-coding downstream 57190 14830963 ~ 14832195 (+)
G58750 NA non-coding downstream 96039 14869812 ~ 14931710 (+)
G58649 NA other upstream 114637 14649724 ~ 14652022 (+)
G58558 NA other upstream 265145 14496936 ~ 14501514 (+)
G58455 NA other upstream 508133 14246695 ~ 14258526 (+)
G58382 NA other upstream 726758 14039757 ~ 14039901 (+)
G58028 NA other upstream 1623051 13140378 ~ 13143608 (+)
G60028 NA other downstream 578274 15352047 ~ 15376169 (+)
CI01000009_15708273_15712002 METTL5 other downstream 934219 15706460 ~ 15712005 (+)
CI01000009_15770057_15782295 FASTKD1 other downstream 984406 15770057 ~ 15783049 (+)

Expression


Co-expression Network