LOC103030598 (cldn20,LOC103030598,LOC107679670,LOC105017817)


Basic Information

Item Value
gene id LOC103030598
gene name cldn20,LOC103030598,LOC107679670,LOC105017817
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34051253 ~ 34069327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255431.3
ggagtgtgtggaggagagtgtgtgagggagagtgtGTGCTAAGTCTGTGCTCCTCCTGCCCTCTATCTgctctgaactgaactgacaGGGCTGGAGTCAAGCACAGAGAAAACAGCGCTGCTTggattctcctctctctctctttccatctctctcttttttcagctCTTTCTCACTTGGGGAGATCTCCAGCTGCCTTCACTCAGCCTCCTGCTGGAGGAGAGTCTGAGAAATGGGCATGTATCTGTCTGATGGATCTGAAGAAGGATCTGgggctgctggagctggactGTGTGGACTTTGTGAGAGACTGTGAGCTGCTGActttttgtgtctgtgtttttgtgtgggaCTCTGAGGAATGTGCTGATCTCTACACACTCTACTCTGGACTCTATGCTGGACCTCACCAACCCCTGCCATGGACATGCTTTGGACATACCTTGGGCAAGCACACGTTGAATTTGGGTGTGAATAGGTGTGGGATTGTGAGCAGAGCATTCTGAGCTAAGTTCTGGGATGTGCTATGACGACAGGAGCAGAACATACAGGGGAAAAAGGAACCGGCAGTATATGTCAATTGCGGTTCAGCACATGCTCACTGCACCATATTCCTGATGTAATATGGCTACGTCATACGTAATTTCACAGTTGTCACAGTGAGGGAACGACCTTCAGGTGAGAAGCTTCAGTCTTCAGGCTTGCGGCACTGTGGACAACCATTAGTTCTGCTTCATTCACACCAAGGACGAACATTGAGtGAGCGGATTCTTCTGTTTCTTACCGGTAGATCTTTGCGAACTGACTGCAGCACCATAGCACGCAGCAATCGTCACCAAGAAGACCAGTGGAGCCTGTGCTGAGGAATTATCTGCGGCGAAGACCTGCGCCGGACTGATAGGGAGCCGCAGAGCGAGGAATTGGAGGGCCACCGCAAGGTGAGAGTCGGTCGAGGGGAAGGGGAGCTGGAGGCTGGACTCCCGCAATGCCTTCGTCCACCATGCAGATGCTCGCCTTCATCCTGGCGTTGCTGGGGGTCCTGGGTGCCACCGTGGCCACTCTGCTCCCCAACTGGAAGGTGAGCGCAGACGTGGGCTCCAACATTATGACGGCGATCTCGCAGATGCAAGGGCTTTGGATGGACTGCACGTGGTACAGTACTGGAGTGTTCAGCTGTACGCTCAAGTACTCTGTGCTAGCCTTGCCTGCTTATCTCCAGACCGCACGCACCACGATGGTCCTCTCTTGCATGCTGGCCACTTTTGGACTCTGTCTGGCTGCCTTGGGGCTAAAATGTACCCACTGGGGTGGCAGCCACCGCTCCAAAGGACACACAGCCATAGCTGCAGGGGCTTGCTTCGTCATTGCTGGAGTCTTGTGCCTTGTTCCTGCATCCTGGTTCACCAACGAGGTCATCACCACCTTCTTGGACTCTAAGGTTCCTAAGAGCAGCAAATACGAGCCAGGGGGAGCTGTTTATGTTGCATTTGTTTCAGCGGGGTTCTTCTTAGCCGGAGGTGTGATCTTCTGCTTGTCGTGCCCACGAAGAAGAAACGGTCCATTGGATTCTGTCTCGTCCCACCCCGACAAGCTATTACaccagcagcaggagcagatAGCCAACGACCGGGACAAACAAAAGCAGCGGCGAGAACAGCAAAGCCAGACAGAGCCACAGGAGCAACAACACAAAGAGAAAACTGCACACCAGGACAAGCTCCAGGTGGACGGACTGCAGCCGGACCAGCCCAAGCCAGAGAAGCCTCAACCggagcaggagcagcagcagcagtactaCTCGCCGTCCAGAAACAGTCCAAGAAACAGTCCAAGAAACAGAGCCCAAGACGTCAAGGCCGTCTACAGCTTGCAGGACTACGTGTGATGACCCAAAGGCGGGTAAAACCCACGGAAAATGGATGCTGTGGCAGGGCTGTCTCTCTTTGTGAGGAGGAGAAAAAtaagcagcaggagcagcaggagaaggaggaggaggagtaatGACTTTGACTGTGTTATCTCCCCCTCTCATCAGTTCTTTTGCCTACTGCAAGCATAAGCTGGGGGTAGCTCCGCCGCCTTGGATCAGGAAAGAACCGGGTATCCTCGGGCAAAAGCACAGAAAACGCTCAGTGCTGCAGTGAGCATTAAAAGAGAatacgaaagagagagagagaaaatgaggcTATTCTGCACAAATGCAGCAAATTTTAAAAGTTCTAAGGAACGCTGCTTTTTGGTTGTTAGAAGAGAGGCTGTTACTTACCAAAGGTTTGAACTTTGCATGAAAATAGCTGCCCAACATTCAgctggaaaacaaaataaaacttcaCATTTTTGCATTGATCACATTTAGAATTCAGTTTAGTACCATTCTGCCTGTGCTTGCTTGCTCTAGCTTGTGAATAATACAACAAAATGCTTAGTAAATACAAGAACAACACAGGCAATTTAAGCTTTAAACTCAGGCCTAAGGGCATGCTTCACACCATTTGAAAAACAGTGCATACAGAATAATAAAGTGCACAAAATCATAATTTCCATGAAAAGAACACACAATGTCCAGTCCATATTTTCCAAAGAGGCAGACAAAGCAGCACAGATCATCTGAGGTAATTACGCTCTTTGCTTTCCCATTAGGTTTCGCTCCGGATGGGTGCACACTGCTCATTTATTGCTAGCAAACGCAgatgcgtatgtgtgtgtgagagcgtgcacatacacacacacacacacacacacacacaagcattttCTACCCTCCCTCCCACTCTTGCTGCGAGGGTAATAGGGTCTTGCACCCAATCATCTTTACTGTGTGTGACTGCCTGTCATTGCTGCAGCTACCGCACTAGACACTGTTCTGGGGCCAGCGGGACGCTGTTTTGTCCCTCATGAACGGAACAGGACAGAGGAGACCCGTGTCCCATCAGGCGAAAGCCTCAGGAGAGACAGGCCTCCCTGCTGGCCAGCAACTGGACCCCTCACAGACTCAGCAGAACCATTTTGTGGCCATTTACTGACAGCCATTTCAAACGAGTCACGgtttacagagaaaaagaatgtATTTTCATCACTTCACCTTCACAGGGACAATGAATCTTTCATCTCTGCTTGTCTGCACTACTCATGCTGCTCTTAAAGTAATGGTTTGGCTAAGAATTGAATTGACAATTTCCTGGGGTCGTATATAAACAGTAGATGACTTACAATGATGACATGTTGGTTGTCTGCAGTTTGCATCTTTAGTTTTCCACTGGAGCTTTAATTCTAGGGTAGCTAACAGATAATGAGCATCTGCAACGCACAGTTATCTatacaatttacaaaaaatatggaCAACATTAAGGCttcatatactgtactgttaaaatatttcaatttcCAACTGTTTATACATTTCATTAATGGTAAGGACAAACCTATTCTTACACAATGAACCAttgtctttactgttttctttatgTGTTATGTGTTCTTTCTTATGCCATTTCTTATACTCACATACTCGATACATCACTATAACAGTTAATGGATTAAAAGCTCTGACACAGGGCTTAAAATAGGGatgagatttatttttttcccaaaacttCCTTACATTTGCTGTTTTCTACAAAATATCGCACTCcacatttatttgaataatcTAGCCAGGGATGTACGATCTAAGTAGGGCCGTCCCatatgcaaaaaatattgcatcatgatatttaaagacattttcatgaTGCACAATATGTATCATGACACACTGGCAtacagacaaaatgcatcagtagATGCATCAGATTCTCAAATTTAAAATCTCTATTCAGACACACTACCTCATGTAGTATAATgatatttatttgaaatgtgCATTCAGTTAAACTGCactaattataatatttgtaaAGAAAGTGTAAGTAAGTGTAGCTGTCAGAAAATTCGCCAGTGTTAAATCACCACTGTTAGTATTAAaatttacactctcagtgttcatttaacatttaataaaacagtgttgATTAAATACTGGAGAATTTACTGTGTTGGCAATGATGAGGTCAAcaaaatattagtattttttgtatcacaataacaaaatgTTATGTATTCATCACTGCCAGAAATCTCATTAGAAATCACAGACACAGCGCAGACACAGATAGTGTAAGCTTATAACAGTCTGACTAAATTAGACCACATTTTATATGAAGACTAAATCTCAATCAAAAGGATCAATACTACACAATGCTTCAATAACGCAAAAATAAAGAAGCAAACTTCAGAGACCAATCATGTCCTGCCTGACTGACACCATTTGTGGAAagtgttcatttgttttttagtcAAACCATCGTATAAACAGTCTACAGGGATGGCAGCCATGTCACGCTTAATGCTGTTTCTTTACTTGTCTTGCATCTGGACACAGATTCATTCAGAAAATAgttttactaaaaatatttgttttcaaCATCATCGACCACGAGACGTTGCAGCCAAAGATGGACATCCTCTGCTATATATATCACTAAAACCTTCATGAAATTTTAAGAAGAGACGATTGTTCAGAAAACTTAAAAGCACTGTGTCCTGCCTCCTTTCTCTCTACTtgtatgcttaaaataaaatactgctaAGCTGCTAAAGGCAAAACCCCAAGCATtcataaattacattacattttaatagcAGCTGATGTTTTATTAAAGCTGTTCTTATGCTTGAACTCTGAATGATCATTCCATCACAAATCAGGGAATACATACAATGATGAAAGCGATGATCTGAATTTGTGTAATTCAAATGTTTCTGCAACTTTCTAATATAAAGATTATAAGACATGTTATACTGTTTTGCCTTTTATTGACTTTCTCCTGACAGTGACTGTAACATACTGTATTCATGTGGAAATGGTAAATATATCTAAATCTTATTACTTCTATCACTGATATTGTA
>XM_022684761.1
ggagtgtgtggaggagagtgtgtgagggagagtgtGTGCTAAGTCTGTGCTCCTCCTGCCCTCTATCTgctctgaactgaactgacaGGGCTGGAGTCAAGCACAGAGAAAACAGCGCTGCTTggattctcctctctctctctttccatctctctcttttttcagctCTTTCTCACTTGGGGAGATCTCCAGCTGCCTTCACTCAGCCTCCTGCTGGAGGAGAGTCTGAGAAATGGGCATGTATCTGTCTGATGGATCTGAAGAAGGATCTGgggctgctggagctggactGTGTGGACTTTGTGAGAGACTGTGAGCTGCTGActttttgtgtctgtgtttttgtgtgggaCTCTGAGGAATGTGCTGATCTCTACACACTCTACTCTGGACTCTATGCTGGACCTCACCAACCCCTGCCATGGACATGCTTTGGACATACCTTGGGCAAGCACACGTTGAATTTGGGTGTGAATAGGTGTGGGATTGTGAGCAGAGCATTCTGAGCTAAGTTCTGGGATGTGCTATGACGACAGGAGCAGAACATACAGTGAGGGAACGACCTTCAGGTGAGAAGCTTCAGTCTTCAGGCTTGCGGCACTGTGGACAACCATTAGTTCTGCTTCATTCACACCAAGGACGAACATTGAGtGAGCGGATTCTTCTGTTTCTTACCGGTAGATCTTTGCGAACTGACTGCAGCACCATAGCACGCAGCAATCGTCACCAAGAAGACCAGTGGAGCCTGTGCTGAGGAATTATCTGCGGCGAAGACCTGCGCCGGACTGATAGGGAGCCGCAGAGCGAGGAATTGGAGGGCCACCGCAAGGTGAGAGTCGGTCGAGGGGAAGGGGAGCTGGAGGCTGGACTCCCGCAATGCCTTCGTCCACCATGCAGATGCTCGCCTTCATCCTGGCGTTGCTGGGGGTCCTGGGTGCCACCGTGGCCACTCTGCTCCCCAACTGGAAGGTGAGCGCAGACGTGGGCTCCAACATTATGACGGCGATCTCGCAGATGCAAGGGCTTTGGATGGACTGCACGTGGTACAGTACTGGAGTGTTCAGCTGTACGCTCAAGTACTCTGTGCTAGCCTTGCCTGCTTATCTCCAGACCGCACGCACCACGATGGTCCTCTCTTGCATGCTGGCCACTTTTGGACTCTGTCTGGCTGCCTTGGGGCTAAAATGTACCCACTGGGGTGGCAGCCACCGCTCCAAAGGACACACAGCCATAGCTGCAGGGGCTTGCTTCGTCATTGCTGGAGTCTTGTGCCTTGTTCCTGCATCCTGGTTCACCAACGAGGTCATCACCACCTTCTTGGACTCTAAGGTTCCTAAGAGCAGCAAATACGAGCCAGGGGGAGCTGTTTATGTTGCATTTGTTTCAGCGGGGTTCTTCTTAGCCGGAGGTGTGATCTTCTGCTTGTCGTGCCCACGAAGAAGAAACGGTCCATTGGATTCTGTCTCGTCCCACCCCGACAAGCTATTACaccagcagcaggagcagatAGCCAACGACCGGGACAAACAAAAGCAGCGGCGAGAACAGCAAAGCCAGACAGAGCCACAGGAGCAACAACACAAAGAGAAAACTGCACACCAGGACAAGCTCCAGGTGGACGGACTGCAGCCGGACCAGCCCAAGCCAGAGAAGCCTCAACCggagcaggagcagcagcagcagtactaCTCGCCGTCCAGAAACAGTCCAAGAAACAGTCCAAGAAACAGAGCCCAAGACGTCAAGGCCGTCTACAGCTTGCAGGACTACGTGTGATGACCCAAAGGCGGGTAAAACCCACGGAAAATGGATGCTGTGGCAGGGCTGTCTCTCTTTGTGAGGAGGAGAAAAAtaagcagcaggagcagcaggagaaggaggaggaggagtaatGACTTTGACTGTGTTATCTCCCCCTCTCATCAGTTCTTTTGCCTACTGCAAGCATAAGCTGGGGGTAGCTCCGCCGCCTTGGATCAGGAAAGAACCGGGTATCCTCGGGCAAAAGCACAGAAAACGCTCAGTGCTGCAGTGAGCATTAAAAGAGAatacgaaagagagagagagaaaatgaggcTATTCTGCACAAATGCAGCAAATTTTAAAAGTTCTAAGGAACGCTGCTTTTTGGTTGTTAGAAGAGAGGCTGTTACTTACCAAAGGTTTGAACTTTGCATGAAAATAGCTGCCCAACATTCAgctggaaaacaaaataaaacttcaCATTTTTGCATTGATCACATTTAGAATTCAGTTTAGTACCATTCTGCCTGTGCTTGCTTGCTCTAGCTTGTGAATAATACAACAAAATGCTTAGTAAATACAAGAACAACACAGGCAATTTAAGCTTTAAACTCAGGCCTAAGGGCATGCTTCACACCATTTGAAAAACAGTGCATACAGAATAATAAAGTGCACAAAATCATAATTTCCATGAAAAGAACACACAATGTCCAGTCCATATTTTCCAAAGAGGCAGACAAAGCAGCACAGATCATCTGAGGTAATTACGCTCTTTGCTTTCCCATTAGGTTTCGCTCCGGATGGGTGCACACTGCTCATTTATTGCTAGCAAACGCAgatgcgtatgtgtgtgtgagagcgtgcacatacacacacacacacacacacacacacaagcattttCTACCCTCCCTCCCACTCTTGCTGCGAGGGTAATAGGGTCTTGCACCCAATCATCTTTACTGTGTGTGACTGCCTGTCATTGCTGCAGCTACCGCACTAGACACTGTTCTGGGGCCAGCGGGACGCTGTTTTGTCCCTCATGAACGGAACAGGACAGAGGAGACCCGTGTCCCATCAGGCGAAAGCCTCAGGAGAGACAGGCCTCCCTGCTGGCCAGCAACTGGACCCCTCACAGACTCAGCAGAACCATTTTGTGGCCATTTACTGACAGCCATTTCAAACGAGTCACGgtttacagagaaaaagaatgtATTTTCATCACTTCACCTTCACAGGGACAATGAATCTTTCATCTCTGCTTGTCTGCACTACTCATGCTGCTCTTAAAGTAATGGTTTGGCTAAGAATTGAATTGACAATTTCCTGGGGTCGTATATAAACAGTAGATGACTTACAATGATGACATGTTGGTTGTCTGCAGTTTGCATCTTTAGTTTTCCACTGGAGCTTTAATTCTAGGGTAGCTAACAGATAATGAGCATCTGCAACGCACAGTTATCTatacaatttacaaaaaatatggaCAACATTAAGGCttcatatactgtactgttaaaatatttcaatttcCAACTGTTTATACATTTCATTAATGGTAAGGACAAACCTATTCTTACACAATGAACCAttgtctttactgttttctttatgTGTTATGTGTTCTTTCTTATGCCATTTCTTATACTCACATACTCGATACATCACTATAACAGTTAATGGATTAAAAGCTCTGACACAGGGCTTAAAATAGGGatgagatttatttttttcccaaaacttCCTTACATTTGCTGTTTTCTACAAAATATCGCACTCcacatttatttgaataatcTAGCCAGGGATGTACGATCTAAGTAGGGCCGTCCCatatgcaaaaaatattgcatcatgatatttaaagacattttcatgaTGCACAATATGTATCATGACACACTGGCAtacagacaaaatgcatcagtagATGCATCAGATTCTCAAATTTAAAATCTCTATTCAGACACACTACCTCATGTAGTATAATgatatttatttgaaatgtgCATTCAGTTAAACTGCactaattataatatttgtaaAGAAAGTGTAAGTAAGTGTAGCTGTCAGAAAATTCGCCAGTGTTAAATCACCACTGTTAGTATTAAaatttacactctcagtgttcatttaacatttaataaaacagtgttgATTAAATACTGGAGAATTTACTGTGTTGGCAATGATGAGGTCAAcaaaatattagtattttttgtatcacaataacaaaatgTTATGTATTCATCACTGCCAGAAATCTCATTAGAAATCACAGACACAGCGCAGACACAGATAGTGTAAGCTTATAACAGTCTGACTAAATTAGACCACATTTTATATGAAGACTAAATCTCAATCAAAAGGATCAATACTACACAATGCTTCAATAACGCAAAAATAAAGAAGCAAACTTCAGAGACCAATCATGTCCTGCCTGACTGACACCATTTGTGGAAagtgttcatttgttttttagtcAAACCATCGTATAAACAGTCTACAGGGATGGCAGCCATGTCACGCTTAATGCTGTTTCTTTACTTGTCTTGCATCTGGACACAGATTCATTCAGAAAATAgttttactaaaaatatttgttttcaaCATCATCGACCACGAGACGTTGCAGCCAAAGATGGACATCCTCTGCTATATATATCACTAAAACCTTCATGAAATTTTAAGAAGAGACGATTGTTCAGAAAACTTAAAAGCACTGTGTCCTGCCTCCTTTCTCTCTACTtgtatgcttaaaataaaatactgctaAGCTGCTAAAGGCAAAACCCCAAGCATtcataaattacattacattttaatagcAGCTGATGTTTTATTAAAGCTGTTCTTATGCTTGAACTCTGAATGATCATTCCATCACAAATCAGGGAATACATACAATGATGAAAGCGATGATCTGAATTTGTGTAATTCAAATGTTTCTGCAACTTTCTAATATAAAGATTATAAGACATGTTATACTGTTTTGCCTTTTATTGACTTTCTCCTGACAGTGACTGTAACATACTGTATTCATGTGGAAATGGTAAATATATCTAAATCTTATTACTTCTATCACTGATATTGTA

Function

symbol description
cldn20 Is expressed in brain; gill; kidney; spleen; and testis.

NR:

description
claudin-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255431.3 True 4947 mRNA 0.44 5 34051253 34069327
XM_022684761.1 False 4838 mRNA 0.44 4 34051253 34069327

Neighbor

gene id symbol gene type direction distance location
LOC103030910 LOC108444009 coding upstream 4868 33983194 ~ 34046385 (+)
ndufaf7 ndufaf7 coding upstream 252479 33789582 ~ 33798774 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding upstream 369417 33676075 ~ 33681836 (+)
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding upstream 401596 33625486 ~ 33649657 (+)
insm1 NA coding upstream 539636 33508074 ~ 33511617 (+)
LOC103034505 LOC108444017 coding downstream 27162 34096489 ~ 34193035 (+)
LOC103029743 zdhhc14,LOC108444016,LOC107747944,LOC107679689,LOC107742328,LOC107560202,LOC108258056 coding downstream 137016 34206343 ~ 34245118 (+)
LOC103028593 LOC108258153,LOC108426258,LOC108444014,LOC107751776 coding downstream 193669 34262996 ~ 34269700 (+)
LOC103028909 NA coding downstream 207774 34277101 ~ 34284584 (+)
papola papola,LOC107560206,LOC107747941,LOC107678672 coding downstream 216497 34285824 ~ 34301667 (+)
G23462 NA non-coding upstream 3479 34046590 ~ 34047774 (+)
G23427 NA non-coding upstream 163384 33885462 ~ 33887869 (+)
G23367 nkx2-4 non-coding upstream 396264 33650637 ~ 33654989 (+)
G23356 NA non-coding upstream 471731 33579267 ~ 33579522 (+)
G23349 NA non-coding upstream 482311 33568394 ~ 33568942 (+)
G23499 NA non-coding downstream 178510 34247837 ~ 34286895 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding downstream 593737 34663064 ~ 34667031 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding downstream 606691 34676018 ~ 34679797 (+)
LOC111196008 NA non-coding downstream 759509 34828836 ~ 34830350 (+)
G23719 NA non-coding downstream 807966 34877293 ~ 34878980 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 86745 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 271350 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 455542 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 881861 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 969391 33076624 ~ 33081862 (+)
trdn NA other downstream 1157471 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 1974104 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 2180497 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 3519779 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 3859028 37928355 ~ 37933989 (+)

Expression


Co-expression Network