xrn2 (xrn2,LOC107704080,LOC107669450,LOC107548427)


Basic Information

Item Value
gene id xrn2
gene name xrn2,LOC107704080,LOC107669450,LOC107548427
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33625486 ~ 33649657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255447.3
AACCAGGCCTGTGTTTGAGCTGTAGCTCTTTAGCTGGTTAAAAGCACGCTGCTCCGCTGCGCTACAGGCTCCCACTCATCCCGAGCTGTTTTTAAGTTTCACAcagatatattattttaaaaacacggTCAGTTTAAACTCGTGGTTTTAAAGAGAAGATGGGAGTGCCGGCGTTTTTCCGCTGGCTGAGTCGGAAATATGCGTCTATAATTGTGAACTGTTTGGAGGAGAagtctAAGGAATGCAATGGAGTTCAAATACCAGTTGACACCAGTAAACCCAACCCAAATGAGGTGGAGTTTGACAACCTCTATTTGGACATGAATGGAATCATCCATCCTTGTACACATCCTGAAGACAAGCCGGCACCGAAAAATGAAGATGAAATGATGGTTGCCATTTTTGAGTACATTGATCGGCTTTTTAACATCGTTCGGCCGAGGAGAGTTCTTTACATGGCAATCGATGGAGTTgcgcCTCGTGCCAAAATGAACCAGCAGCGATCCAGAAGATTTCGAGCTTCCAAAGAAGGAGTGGAGCTtgcagaagaaaaacaaaaaatgagggAAGAGATTTTTCAAAGGGGTGGGTACCTGCCTCCTGAGGAAATCAAAGAGCGATTTGACAGCAACTGTATCACTCCAgGCACTGAGTTCATGGACAACTTGGCCAAATGCCTTCGATATTATATTGCAGATAGATTGACCAATGATCCTGGATGGCGTACTATCACAgtCTTTCTGTCTGATGCCAGTGTTCCTGGAGAAGGAGAACACAAGATCATGGATTTTATCAGGAGACAAAGGGCTCAACCAAACCATGATCCGAATACTCATCACTGTCTCTGTGGTGCTGATgCTGATCTGATTATGTTGGGCCTGGCCACTCACGAGCCCAACTTCACCATCATCCGAGAAGAATTTAAGCCCAACAAACCCAGACCATGTGGTCTGTGTGGACAAATAGGCCATGAACTTAAAGACTGTCAGGGAGTGGCTagagagaagaaaggagagCACGATGAGTTTGCAGACACAATTCCAGTGTCGGAGCAGGAATTTATATTCATTAGATTGTCTGTTCTGAGAGAGTATCTCGAGCGAGAGCTGACTATGGCTAGCCTGCCTTTCCCCTTCAACTTTGAGAGGAGTGTAGATGACTGGGTCTTCATGTGCTTCTTTGTGGGAAATGATTTCCTGCCTCATTTACCCTCTTTAGAAATCAGAGAGGGTGCTATTGATCGACTTGTGTCCATTTACAAAGATGTTGTTCACAAGACTGGgGGTTACCTCACTGAAAATGGCTTTGTGAACCTGGAGCGAGTAGAGCTCATAATGCAGGCTGTTGGAGTTGCTGAAGATAACATCTTCAAGAAGCGCAAAGATGACGAGGAGAATTTTAAAAGGAGAATGAAGGAAAAGAAGAAACGAATGAAAGCAGAGCAGGGCCCAGCATATCTCCCAGGAGGTCAGTTTGCTCCTCAAGCTCTAGGGGGAAGAGACCGACCCATGCCAGTGCAGAATGCACGTCACGCCGCCTTTGACATGAGGATGCAAGGAAACCGCAACCAGCAAAACAGGGATGCTGCTTCATCTCTGAAGGCCATGTTGAAGAATGGGAGCAAGGATTCTGCGGGGACTAGCGATGGCATGGACAATCGTGGAGTGAAGAGAAAAGCAGAAGACAGCGACAGTGAGCCAGAGCCTGAAGATAATGTCAGGTTATGGGAGGAAGGCTGGAAGCAGCGTTATTACAAGAACAAGTTTGATGTGGACGAGACTGATGAGGAATTTCGCAAAAAAGTGGTCAAGTCCTACGTGGAAGGCCTATGCTGGGTTCTTAGATACTACTACCAGGGTTGTGCATCCTGGAAGTGGTACTTTCCGTTTCACTATGCACCGTTTGCATCTGACTTCAAAGACATCAAGGACATGTTCAAGGAGTTTGAAAAAGGGACCATGCCTTTCAAACCTCTTGAGCAACTAATGGGAGTATTTCCTGCAGCCAGTGGAAATTTTCTACCAGAAACCTGGAGAGCACTCATGAGCAACCCCGACTCTTCAATCATTGACTTCTATCCTGACGACTTTGCAATTGATCTGAATGGAAAGAAATACGCCTGGCAGGGTGTTGCATTGTTGCCGTTTGTTGATGAACGAAGGCTGCGGGGAGCCTTGGCAGATGTCTACCCAGATTTAACCACAGAAGAGAtCAGAAGAAACAGTCTGGGGAGTGATGTGGTTTTTGTGGGGAAATCGCACCCTCTGTGTGACTTTATCAAGGAACTCTATTCTTCAGAATCTCGTGAGGGCACTGAGATTCCTGCGGAGCTGTGCCATGGAATCCAAGGTACATTAAATCTTGATGAAGATCCTATTCTACCAGATAAACCGGTTGAGTCTCCCATCCCAATGCTGAGAGATATTCCATACAGTAGTGCAGTGGGAATCAAATTCAAGGATCCGCAGTATGAAGGAGGTCACGTGTTCAAGGCTGTCGTCCTTCCCGGGGCTAAAATGCCAAATAAGGTGTTAAAGCCTGGAGACTGGGAAAGGTCGAACAGAGGGCCATGGAAACCTCAGCTGGGGTTCAATCCCAACCGTCAGCAAGTCCACCTGGATCAGTCTGCCTTCAGAACATTAGGcCATCATGTAAACAGATATCAGCAAGGAAGTGGACAGCACAGCCAAGGACCACCACGTGGTGGTCAGTACAGCAATGCTCCACCTCCCAGTGTATATCATCAAGGAAACTACAGACCACCGCTCAGAGACCACCAACCCCCATTTCAGCATTCCAGGCAACATGGATTTCCAAGAGCACATCCCCCGTCTCAACAGCAGTACCCAAGGCCTCAGTATGGAGGTCAGGGTTGGGACCGAGCAGTGCAAGCTCAAGGCTCTGCCTACCAGCACAACTCGCAGAGAGGTCGTGGAGGACCAGGTGGCTACCACCAGCACCCACAGCACAGAGATGACCGTAGACCACAGGAGggGTACAATTCTGCAAGAAATTATGCCCTGCCTCCACAGACAAGACGATACAACTGGAATTAAATGTTCAGCTTTCTGTATTGGGGATAATTGGTGTTGtgggtttttttcttttttcttttttccttttttttattaatgaaataCTTTAACATTTATGGGCTGTTGGTTTGTAAGATAGTACAAAGGAACATGTTCATATGTacgtatttttaaaaaatatgcgtctgtaaacacaattttacgttttgtttttttatatcatttttctttctttaaatgtCCTGCTCCCCCTATGTCCTAAAATACTTGTGCAACTCCCCTGGAGCCTCTCATTTTAGCAgtcaaaataatgtattatttgacTGGATGTTTGACATAAATCCTCTTGACAGGTTGAGCTTTTGGCCCTGTGTTTTGTCTCATTGGCTGAATATTCATAAATGTATCCTAATGAACAATTATACATGTAGATCTCTGCTTTGAAAGCCTAGTCTTTGAATGACAATGAATTAATTGGTTTTAGTCAACGGTGGTCTTCAATTTGAATTCCGCTGGCcagacatttttcatttccAAGTTTTGTCTGTGAATTATTTTGAGTGgccctattttatttttagaagttTGGTCCATTCAGTGGCTCTAGGTAATATTTTTATAGTATGTGTTGCACCAAATGTACAGCTTTTAGTTATAGCTTAGTCTATAGCTCAGAAACGTTTGCTTTTTTGAACGTTTTATTTTTGGAGCTACTGGATTAATGCAGCTTGTATGTAAGGCTCCTTGGCAGTTTGTGATGTTAATCATGTAATCTGAACATTTGGTTTAAAACTCCACCTACTTGTCTGAAAatgctaaatataaaaaaatgtgtgaaggcaacagtgtaaatgtataaCAGGTGCAAAAGTGTTAAggtttatttactaaatactaaaagcACCTAAATCTTGCCAAAAGGACAAGAATAATTTGCAATAAACATTAGACCGGTTTAGTGATTTGCCAGCCTGTTCGACTACAGTAAATGTTATCACTGTGTAAAGCAGACGgaagaaaatgttttgtttcCGAGTTAGTACAGAATGCTTTATTCAAACTTTTGATTAACAAAAAGGTAAATTTTGAGCtggtttactttttatttctcgAGCAAATGGGTCCTCAAATAAAAACTtggcaataaaaaaagatagaaaagctCAGCCTTTTTTACATAACTGTTCAATGCCCCGCTGTGATTCTCTTTCGTTTACGCGAAttgaaaatgtataattatcACTTTCATAgtgttgtaagaaaaaaaaaactttcgaATGTCCACGTGGTGTTAGAACTGAATCGTCATGCTGTGTAGCTTTttcttaactttaaaaaaaaaaaagacagaaccGAGTAAAATCGGTATCCAGTATTAGATATGCAGCCTACATTGCCCTTccatttttattctaaaaatcatattttacaaaGTGAAAATGAGATTTGATGTTCTGTCCGGCACATCTCTTCTatcatgaaataaacaaaataatagaaatcaGTCCGAGACTGCAATTCCGAAATCAAACCAATAAAAATCCACACATTTA

Function

symbol description
xrn2 Predicted to enable 5'-3' exoribonuclease activity and RNA binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in adenoid cystic carcinoma and lung cancer. Orthologous to human XRN2 (5'-3' exoribonuclease 2).

NR:

description
PREDICTED: 5'-3' exoribonuclease 2 isoform X3

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0004534 5'-3' exoribonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12619 XRN2, RAT1; 5'-3' exoribonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255447.3 True 4588 mRNA 0.43 31 33625486 33649657

Neighbor

gene id symbol gene type direction distance location
insm1 NA coding upstream 113869 33508074 ~ 33511617 (+)
cfap61 NA coding upstream 127165 33444402 ~ 33498321 (+)
naa20 naa20 coding upstream 188682 33431923 ~ 33436804 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding upstream 549346 33070811 ~ 33076140 (+)
filip1 filip1 coding upstream 557759 33016420 ~ 33067727 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding downstream 26418 33676075 ~ 33681836 (+)
ndufaf7 ndufaf7 coding downstream 139925 33789582 ~ 33798774 (+)
LOC103030910 LOC108444009 coding downstream 333537 33983194 ~ 34046385 (+)
LOC103030598 cldn20,LOC103030598,LOC107679670,LOC105017817 coding downstream 401596 34051253 ~ 34069327 (+)
LOC103034505 LOC108444017 coding downstream 446832 34096489 ~ 34193035 (+)
G23356 NA non-coding upstream 45964 33579267 ~ 33579522 (+)
G23349 NA non-coding upstream 56544 33568394 ~ 33568942 (+)
LOC111195982 NA non-coding upstream 123135 33501237 ~ 33502351 (+)
G23289 NA non-coding upstream 264887 33360380 ~ 33360599 (+)
G23286 NA non-coding upstream 272225 33353000 ~ 33353261 (+)
G23367 nkx2-4 non-coding downstream 980 33650637 ~ 33654989 (+)
G23427 NA non-coding downstream 235805 33885462 ~ 33887869 (+)
G23462 NA non-coding downstream 396933 34046590 ~ 34047774 (+)
G23499 NA non-coding downstream 598180 34247837 ~ 34286895 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding downstream 1013407 34663064 ~ 34667031 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 29775 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 456094 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 543624 33076624 ~ 33081862 (+)
LOC103042732 NA other upstream 784140 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 798547 32822344 ~ 32826939 (+)
cebpzos cebpzos other downstream 128285 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 244679 33894336 ~ 33964508 (+)
trdn NA other downstream 1577141 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 2393774 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 2600167 36249824 ~ 36458929 (+)

Expression


Co-expression Network