LOC103037759 (tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488)


Basic Information

Item Value
gene id LOC103037759
gene name tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33070811 ~ 33076140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255453.3
GCACCGCGGAAGAGCTGCTGTCAAAACTTCCGTGAAGACGCTGCCGGGATTAAACAGGGCTCAGACCGGGGATCTCTCCGTAACCGCGGTTTAAACCCCTCAGCCGGGCTCAGAGCAGGGGCCGGGCTGTGTAACAGCCGTGTGAGTGAGCAGCACAGGCCGGTAGCGGGGTCAGAGCCGCAAACTCCGCCGCTGTTCGCGGTTGGTCTACAGTaactaacagcagcagcagcgatgGCGTCCAGCTACAGCGCTAAGGAAGAGGACGGGCAACGCGCCGGGGCTCCGGGACCCGCGGGCAACGCAAACAGTGGAAAGAAGCCCGACAACACCGCCTTCAAACAGCAGCGCCTGCCCGCCTGGCAGCCCATCCTCACCGCGGGCACCGTGCTGCCGGCCTTCTTTATTATCGGCCTCATCTTCATCCCTATCGGCATCGGCCTGTTCGTCACCTCCAACAACATCAAGGAGTTCGAGATCGATTACACCGGGACAGATTCATGGAGTCCGTGCTACAATTGCGCTCAGAACTACAGCTGGAACAGCTCGACGCCGTGCAGGTGCACACTGCCCTTTACTCTTGAGCAGCCATTTGAGAGCAATGTTTTTATGTACTATGGGCTGTCAAACTTCTACCAAAACCATCGCCGCTATGTTAAATCTAGAGATGACAGTCAGCTGAATGGAGACCTCTCATCACTGAAGtatCCCAGTAAAGAATGTGAGCCATATCGCCTAAATGAAAACAAGCCCATTGCCCCATGTGGTGCTATTGCTAACAGCATGTTTAATGACACGCTAGAATTGTACTACATCGATCCCAATGGAACCCAGACCCTAATTCCATTAATGAAGAAGGGAATTGCGTGGTGGACAGATAAGCATGTAAAATTCAGGAACCCTGGTGGCAGTAATGCCAACCTTACAGCTGTTTTCCAAGTCAGCACAAAGCCAGTCAACTGGCGCAACCCAGTGTACGAGCTGGACAGTGACCCAGAGAACAACGGCTTCATTAATGAAGACTTCATCGTTTGGATGCGAACAGCTGCCCTGCCCACTTTCAGGAAACTCTATCGCATTATCCAAAAGAAGAACAACATGACACCCACACTACCCAGGGGCAACTACACCCTAGAAGTTGTTTACAATTATCCTGTGAACAGCTTTGAGGGCCGTAAGCGCATGATCCTGAGCACCATCTCGTGGATGGGAGGGAAAAACCCCTTCCTGGGCATTGCTTACATCACTGTGGGCTCTGTCTGCTTCTTCCTTGGAGTGGTCCTCCTTTTCATCCACCACAAATACGGAAATCGAAACAACAGCTCTGACATTCCAAATTAACTACAACTGCATGCCCTCCACCCGCCCTCAGTCACATGCATGGTGAAGGCCACCTGCTTACTGTCAAGGCttgtctatgtgtgtgtcttttgtGTATTTGAATAGTATGCATGTAGTCGCACAGATACTGGCAGCACTTTGGAGGGTTGATGTGTATGCTGTGTTTAAATGAGATGGCTTGCAGCAAGGTGtgaattttctatttattttttgagataAGAATGTTCTGAGGTAAGTTAAGGTATACTTTTTATTACATTGTTTCTGTGTGTTGAAGATGATTCTACGGGCTGTCTCTTAATAGCTGTGCTTTAACtgaagtgtatatatttaaatacgaACAAGTGTAGCATTGCAGACTTTTACTTGAGGATTGCGTTTGAAATAACTGGATGAATGTATATAAGCTTTACTTAGCTGATTTCAGTCTAATTCTTGCCCGAGTCTTGCTGCCTAAAGAAAGTGATGTTAGACACCTGACATTAAATGTTCAGGCTTGTTTAACTAGATGTATGACTACTTGCGACCTTTGCTTACAAAGATTTTTGCCTCCACCAATTTAGAGGACAGATTTACCATTGAAGTGGTCAGTACAACACACAGTTTCCCAGGTgtataatgaatataaaaaaatgactgaTCGATTCACAGGTTTTAGTGACATAATGACTGTTCTCTCTAAACagtgatttcatgtttttcatggaTAGGTCAATAAGAGGAGGATAAGGACTGTTCCTATTGAGAAATCCTCAGGTTGAGCTGAGTTTGTCCTGCCAAGCCGACTTCCACAGGGGTGTGTTGGAGCATTGCAGACTTCATCACCTTCATGTTAGGTCTGCACATTGTTTGCATTATTCAAATGCAGCTACGTGTACTacatgtctttttctttttttaaatcagttttggaGATTTGCTGtgtgtcttttattttatctgtcaCAAGTCATCCTGTCTATAATATTTTCAGCCGTTATTTGCACTTTAGACATGCCTTAGCTTACTTGACTCTTTTGGTTTCTTCAGTGGAGCTGTGTCTTTCATTCCtgatgaaataaacaaatacaattgAACCCA

Function

symbol description
tmem30ab Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in transport vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and plasma membrane. Orthologous to human TMEM30A (transmembrane protein 30A).

NR:

description
PREDICTED: cell cycle control protein 50A-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255453.3 True 2421 mRNA 0.46 7 33070811 33076140

Neighbor

gene id symbol gene type direction distance location
filip1 filip1 coding upstream 3084 33016420 ~ 33067727 (+)
kif13b kif13b coding upstream 100792 32931610 ~ 32970019 (+)
extl3 extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127 coding upstream 180370 32854082 ~ 32890441 (+)
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding upstream 379150 32591870 ~ 32691661 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding upstream 1240647 31824231 ~ 31830164 (+)
naa20 naa20 coding downstream 355783 33431923 ~ 33436804 (+)
cfap61 NA coding downstream 368262 33444402 ~ 33498321 (+)
insm1 NA coding downstream 431934 33508074 ~ 33511617 (+)
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding downstream 549346 33625486 ~ 33649657 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding downstream 599935 33676075 ~ 33681836 (+)
G23116 NA non-coding upstream 176161 32894241 ~ 32894650 (+)
G23075 NA non-coding upstream 354366 32711872 ~ 32716445 (+)
G23062 NA non-coding upstream 523347 32525062 ~ 32547464 (+)
G23057 NA non-coding upstream 543087 32522014 ~ 32527724 (+)
G23053 NA non-coding upstream 578070 32492255 ~ 32492741 (+)
G23251 NA non-coding downstream 96229 33172369 ~ 33172714 (+)
G23253 NA non-coding downstream 113821 33189961 ~ 33190715 (+)
G23255 NA non-coding downstream 131172 33207312 ~ 33207532 (+)
G23282 NA non-coding downstream 269672 33345812 ~ 33346060 (+)
G23286 NA non-coding downstream 276860 33353000 ~ 33353261 (+)
LOC103042732 NA other upstream 229465 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 243872 32822344 ~ 32826939 (+)
G22834 NA other upstream 1575913 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 2557985 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 2806961 30259308 ~ 30263850 (+)
LOC103037425 LOC108426312 other downstream 484 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 7502 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 511389 33587529 ~ 33595711 (+)
cebpzos cebpzos other downstream 701802 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 818196 33894336 ~ 33964508 (+)

Expression


Co-expression Network