extl3 (extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127)


Basic Information

Item Value
gene id extl3
gene name extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 32854082 ~ 32890441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255470.3
accaccGCTCGCAGTGTTTGCAGAGCTGGATCTAGCTATCTAACAATGCTGTGCGGGTCCGGGGAGCAGCTCTGGGAGGTTACACGGCTGGAGGAGGTGTAAGGGCTGGGTGTGAATCAGCTCGTGTGTGCTCCGGGTCGTCTGTACGGTCAGTGATCTGCGGCGGATCTGTGCGGAGAcgcggatctgctgctgctgcagcggaGCTCCTTCTTCACACACCGGGGTTGGACTCTGGATTAAAGGCATGGTAGATGGTCCTTAGTCCTTCAGCCAGCAGTTGGCCAGAGGCCTTATCATAGCCCCCATTCCTGGGGGTCCTACTGTGCAGAAGAACGACTCGGACAAACATAATGACACACAAGAAAATGCACATGAGCTATGTCCTCAGCTGGGATTTCAGCAAGGGGCACTCTGTTCTTGCCACTGTCAAAGGCCCCTTTTATACCCTTGGATAGTTCTGGAGTGGACTTACGTAACACAGAGCAAAACGGCATTATGTGTGGACCATATGCTCTTGAAAATgaagttttcttttatttgaaaCCAAAGTGAAGGTctagatttattattttttcaatgtGTTAATGTAATACAAAGCAAGAAATGATCCGTTTTCTGTTGACCTGTGCATACACAGTGCAGGCAAAATTGCATTATGGCTGCTGAATCTCTCCAACAACTTAATTTACCTGTTTGGTGTGGTGGAGAGTGACATTTGGACGATGCAGCGTAACGGAGGCGTCGTGGGGAATGGCAGCCAGTCGTGGGTGCTTCGGCGGGTCCGGCTGACTTGGCTCAGCTTCATGCTCTTCTTCATCTTGGTCTTCTTCCCACTCATTGCACACTACTACCTCACCACGATTGATGAGGCAGTGGGGCCAGACAAACGCATATTTGGCCCGAGGCCAGGTGGTGAACTGTGCGAAGCAAAGCATGTCCAAGATCTGTGTCGGATTCGGGAATCTGTGAGTGAAGAGTTGCTTCAGCTGGAAGCCAAGCGGCAGGAGCTCAACGGTGAGATAGCACGTCTTAACCTGCGCATCGAAGCCTGTAAGCGCAGTATCGACAGTGCCAAACAGGACTTACTACAACTCAAAAATGTCATCAGCCAGACAGAACACTCTTATAAGGAACTCATGGCACAAAACCAGCCAAAATTATCATTGCCAGTCAGATTATTACCAGACAAAGATGACCCAGGACTCCCCCCACCAAGGTCCGTACAGTCCTGCCGCTTGCACACCTGTTTTGATTACGCCCGGTGTCCACTTACATCCGGGTTTCCGGTCTATGTGTATGATACAGGGTCGTATCCTTGGGGTGAATATATTGACCCATTGGTCAAACAAGCGTTTGCATCATCTGTTAAGAGTAGTGTCTACGTTACTGACAATCCAAGTATTGCATGTCTGTATGTGGTGCTTGTTGGAGAGATACTGGACTCCTCAccatctcctcctccttcccccTTAGACCTAGAAAAGCAGCTAAAGGCATTGCCGTACTGGAGGTTGGATGGTCATAATCACCTGCTTATCCACCTGTCGAGAAAGTCCTTAACTCAGAACTTCTTGTACAATGTAAGCACAGGCCGAGCAGCCGTAGCACAATCTACCTTTCTGGAGCGACAGTACCGGGAAGGCTTTGACCTGGTGGTGTCTCCCCTGGTCCATGCTCTTTCTGAGCCAAACTTTTTGGAGGTGCCTCCTCAGGTCCCAGTGAAGAGGAAGTATCTCTTCACCTTTCAGGGAGAAAAAGTGGAATCCCTGAGGAGCAGTTTGTTGGAAGCACCTCCACAGTCCTTTGAAGAAGAAATGGAAGGAGACCCGCCTGCCGATTATGACGACCGCATTATTGGCACCCTCAAAGCTGTGCAGGACAGCCACCTAGACCAGGTACTTGTAGAGTTTACCTGCAAAAACCGACCAAAGCCCAGCTTGCCAACTGAGTGGGCTTTGTGTGGGGAAAAGGAGGATCGGTTAGAGGTACTGAAAGCGTCCACGTTTGCCTTGGTGATCTCTCCAGGTGATGGACAAGTCGTGGCATCTGCAGGGGTCAACATGCGTCTTTTTGAGGCGCTAGAAGTTGGGGCAATCCCTGTGGTGCTCGGCGACCACTCAAAGTTGCCATATCATCAGCTTATTCGGTGGAGTGAGGCAGCTATTATGGTGCCCAAGCCTCGAATAACAGAGTTACACTTTCTTCTGCGCAGTCTCTCGGATAATGACTTGCTGGCCATGCGACGTCAGGGACGATTCTTATGGGAGACgtacttttccacctctgaGAGTATCTTTAACACCATACTGGCTAGTGTCCGAACTAGCATTCAGATACCAGCAGCCCCTATTAAGGAAGAACCTGCCCAGGAGATTCCCCACAAGGCTGGGAAGATGGCAGGAACAGATGCAAATTTGGCCGACAACGGTGACCTGGATCTTGGACCAGTAGAGACAGAGCCACCTTATGCTTCACCAAGGTATTTGCGCAATTTCACATACACGGTATCGGATGTCTATCGAACCTGGAATCGAGCCCCTGGACCATTCCATCTGTTCCCCCACACTCCGCTGGACCCCGTTCTTCCTTCTGAGGCAAAGTTCCTTGGCTCAGGAACTGGATTCCGTCCCATTGGTGGAGGTTCTGGGGGCTCTGGAAAGGAGTTTCAAGCAGCGCTTGGAGGAAATGTCCCACGAGAGCAGTTCACAGTGGTCATGCTGACATACGAGCGAGAGGAGGTACTCATGAACTCCCTGGAGAGACTGAATGGCCTTCCCTATCTCAACAAGGTGGTGGTAGTCTGGAATTCCCCCAAACCACCCTCAGATGACCTCCTCTGGCCAGACATTGGGTTGCCAATTGTGGTGGTGCGGACAGAGAAGAACAGCTTGAACAATCGTTTCCTTCCCTGGGACGCGGTGGAGACTGAAGCCATCTTGTCCATTGATGACGATGCTCACCTTCGACATGATGAAATTATGTTTGGGTTCAGgGTGTGGCGTGAAGCCAGGGACCGTATTGTGGGTTTTCCAGGGAGGTTTCATGCCTGGGACCTAAACCACCAGTCCTGGCTCTACAACTCCAACTACTCCTGCGaactgtccatggtgctgacGGGCGCCGCGTTTTTCCACAAGtaCTATGCCTACCTGTATTCCTACGTGATGCCCCAGGCCATCCGGGACATGGTGGACGAGTACATCAACTGTGAGGACATCGCCATGAACTTCCTGGTGTCACATATCACCCGCAAGCCCCCGATCAAGGTGACGTCTCGCTGGACCTTCCGCTGTCCCGGCTGCCCGCAGGCCCTCTCACACGACGACTCGCACTTCCACGAGCGCCACAAGTGCATCAACTTCTTTGTGAAGGTGTATGGGTACATGCCACTGCTCTACACGCAGTTCCGGGTGGACTCTGTGCTGTTTAAGACACGACTTCCACACGACAAGACAAAGTGCTTCAAGTTCATTTAGCAGCAGCGGGTGGGAGGAAGCACAAACAGACTGGGAGTGTAAGAGTAAACTGGGCAGCTCTGTGGGCAGCTCTTAGCCAGCAGGACCTTTCATCATTACAGACTGTacggatttttattttttctttcgtTCACCTGAAACTTGACGGGCTTCAAGCTGAGGGAGAACTGATGAACTAATACAGAAAAAagccttttatttgttttgaatcatttatgtgtgtacgagtgtgtgtgtgtacgggtGTGTGTACgtgaggtgtgtatgtgtgaccCATCAGCAACCACTACTGGTCTCATTTGCACCACTCTCTGACAGTCCCTGGGAAAAAGAACAAAGGCGATTGGGAGAAATGAATGCACAGTTTTATTTCAAGGACACTTTAACGGATCTCAAACCTAACATTTGAGCTTTACAACTGACAGACTGGCCGGACATGCGGTCAGgggacaaaaaatacaaaaaaaaaaaaacaa
>XM_007255471.3
TTGCTATCCACGCTGCAGTCCTTGCCTGTAATGGGAGGAGCTAAGGGGCGGGTTTCTCCCGCTCTCTAATTCTGTACCAAACAGGCTCTTTACACCCTCTGTCCTCAGTATCTCGCTACAGCTTTTAGAGCTGGGCATGCCTTCTTGTAATTAGCTTCCTAAATAGACCCCTGATGCTACTCATCATGGACCCACAATCCTAAAATATCAGCCTTCCATCTGGTGCCTCTGTTTGAAGAAACTGCAGTTAAAGCTGCTCTCAGAGTATCCAGAAAGTTGGACTCTGGATTAAAGGCATGGTAGATGGTCCTTAGTCCTTCAGCCAGCAGTTGGCCAGAGGCCTTATCATAGCCCCCATTCCTGGGGGTCCTACTGTGCAGAAGAACGACTCGGACAAACATAATGACACACAAGAAAATGCACATGAGCTATGTCCTCAGCTGGGATTTCAGCAAGGGGCACTCTGTTCTTGCCACTGTCAAAGGCCCCTTTTATACCCTTGGATAGTTCTGGAGTGGACTTACGTAACACAGAGCAAAACGGCATTATGTGTGGACCATATGCTCTTGAAAATgaagttttcttttatttgaaaCCAAAGTGAAGGTctagatttattattttttcaatgtGTTAATGTAATACAAAGCAAGAAATGATCCGTTTTCTGTTGACCTGTGCATACACAGTGCAGGCAAAATTGCATTATGGCTGCTGAATCTCTCCAACAACTTAATTTACCTGTTTGGTGTGGTGGAGAGTGACATTTGGACGATGCAGCGTAACGGAGGCGTCGTGGGGAATGGCAGCCAGTCGTGGGTGCTTCGGCGGGTCCGGCTGACTTGGCTCAGCTTCATGCTCTTCTTCATCTTGGTCTTCTTCCCACTCATTGCACACTACTACCTCACCACGATTGATGAGGCAGTGGGGCCAGACAAACGCATATTTGGCCCGAGGCCAGGTGGTGAACTGTGCGAAGCAAAGCATGTCCAAGATCTGTGTCGGATTCGGGAATCTGTGAGTGAAGAGTTGCTTCAGCTGGAAGCCAAGCGGCAGGAGCTCAACGGTGAGATAGCACGTCTTAACCTGCGCATCGAAGCCTGTAAGCGCAGTATCGACAGTGCCAAACAGGACTTACTACAACTCAAAAATGTCATCAGCCAGACAGAACACTCTTATAAGGAACTCATGGCACAAAACCAGCCAAAATTATCATTGCCAGTCAGATTATTACCAGACAAAGATGACCCAGGACTCCCCCCACCAAGGTCCGTACAGTCCTGCCGCTTGCACACCTGTTTTGATTACGCCCGGTGTCCACTTACATCCGGGTTTCCGGTCTATGTGTATGATACAGGGTCGTATCCTTGGGGTGAATATATTGACCCATTGGTCAAACAAGCGTTTGCATCATCTGTTAAGAGTAGTGTCTACGTTACTGACAATCCAAGTATTGCATGTCTGTATGTGGTGCTTGTTGGAGAGATACTGGACTCCTCAccatctcctcctccttcccccTTAGACCTAGAAAAGCAGCTAAAGGCATTGCCGTACTGGAGGTTGGATGGTCATAATCACCTGCTTATCCACCTGTCGAGAAAGTCCTTAACTCAGAACTTCTTGTACAATGTAAGCACAGGCCGAGCAGCCGTAGCACAATCTACCTTTCTGGAGCGACAGTACCGGGAAGGCTTTGACCTGGTGGTGTCTCCCCTGGTCCATGCTCTTTCTGAGCCAAACTTTTTGGAGGTGCCTCCTCAGGTCCCAGTGAAGAGGAAGTATCTCTTCACCTTTCAGGGAGAAAAAGTGGAATCCCTGAGGAGCAGTTTGTTGGAAGCACCTCCACAGTCCTTTGAAGAAGAAATGGAAGGAGACCCGCCTGCCGATTATGACGACCGCATTATTGGCACCCTCAAAGCTGTGCAGGACAGCCACCTAGACCAGGTACTTGTAGAGTTTACCTGCAAAAACCGACCAAAGCCCAGCTTGCCAACTGAGTGGGCTTTGTGTGGGGAAAAGGAGGATCGGTTAGAGGTACTGAAAGCGTCCACGTTTGCCTTGGTGATCTCTCCAGGTGATGGACAAGTCGTGGCATCTGCAGGGGTCAACATGCGTCTTTTTGAGGCGCTAGAAGTTGGGGCAATCCCTGTGGTGCTCGGCGACCACTCAAAGTTGCCATATCATCAGCTTATTCGGTGGAGTGAGGCAGCTATTATGGTGCCCAAGCCTCGAATAACAGAGTTACACTTTCTTCTGCGCAGTCTCTCGGATAATGACTTGCTGGCCATGCGACGTCAGGGACGATTCTTATGGGAGACgtacttttccacctctgaGAGTATCTTTAACACCATACTGGCTAGTGTCCGAACTAGCATTCAGATACCAGCAGCCCCTATTAAGGAAGAACCTGCCCAGGAGATTCCCCACAAGGCTGGGAAGATGGCAGGAACAGATGCAAATTTGGCCGACAACGGTGACCTGGATCTTGGACCAGTAGAGACAGAGCCACCTTATGCTTCACCAAGGTATTTGCGCAATTTCACATACACGGTATCGGATGTCTATCGAACCTGGAATCGAGCCCCTGGACCATTCCATCTGTTCCCCCACACTCCGCTGGACCCCGTTCTTCCTTCTGAGGCAAAGTTCCTTGGCTCAGGAACTGGATTCCGTCCCATTGGTGGAGGTTCTGGGGGCTCTGGAAAGGAGTTTCAAGCAGCGCTTGGAGGAAATGTCCCACGAGAGCAGTTCACAGTGGTCATGCTGACATACGAGCGAGAGGAGGTACTCATGAACTCCCTGGAGAGACTGAATGGCCTTCCCTATCTCAACAAGGTGGTGGTAGTCTGGAATTCCCCCAAACCACCCTCAGATGACCTCCTCTGGCCAGACATTGGGTTGCCAATTGTGGTGGTGCGGACAGAGAAGAACAGCTTGAACAATCGTTTCCTTCCCTGGGACGCGGTGGAGACTGAAGCCATCTTGTCCATTGATGACGATGCTCACCTTCGACATGATGAAATTATGTTTGGGTTCAGgGTGTGGCGTGAAGCCAGGGACCGTATTGTGGGTTTTCCAGGGAGGTTTCATGCCTGGGACCTAAACCACCAGTCCTGGCTCTACAACTCCAACTACTCCTGCGaactgtccatggtgctgacGGGCGCCGCGTTTTTCCACAAGtaCTATGCCTACCTGTATTCCTACGTGATGCCCCAGGCCATCCGGGACATGGTGGACGAGTACATCAACTGTGAGGACATCGCCATGAACTTCCTGGTGTCACATATCACCCGCAAGCCCCCGATCAAGGTGACGTCTCGCTGGACCTTCCGCTGTCCCGGCTGCCCGCAGGCCCTCTCACACGACGACTCGCACTTCCACGAGCGCCACAAGTGCATCAACTTCTTTGTGAAGGTGTATGGGTACATGCCACTGCTCTACACGCAGTTCCGGGTGGACTCTGTGCTGTTTAAGACACGACTTCCACACGACAAGACAAAGTGCTTCAAGTTCATTTAGCAGCAGCGGGTGGGAGGAAGCACAAACAGACTGGGAGTGTAAGAGTAAACTGGGCAGCTCTGTGGGCAGCTCTTAGCCAGCAGGACCTTTCATCATTACAGACTGTacggatttttattttttctttcgtTCACCTGAAACTTGACGGGCTTCAAGCTGAGGGAGAACTGATGAACTAATACAGAAAAAagccttttatttgttttgaatcatttatgtgtgtacgagtgtgtgtgtgtacgggtGTGTGTACgtgaggtgtgtatgtgtgaccCATCAGCAACCACTACTGGTCTCATTTGCACCACTCTCTGACAGTCCCTGGGAAAAAGAACAAAGGCGATTGGGAGAAATGAATGCACAGTTTTATTTCAAGGACACTTTAACGGATCTCAAACCTAACATTTGAGCTTTACAACTGACAGACTGGCCGGACATGCGGTCAGgggacaaaaaatacaaaaaaaaaaaaacaa

Function

symbol description
extl3 Predicted to enable glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity. Acts upstream of or within several processes, including axon guidance; embryonic pectoral fin morphogenesis; and proteoglycan biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system and pectoral fin musculature. Orthologous to human EXTL3 (exostosin like glycosyltransferase 3).

NR:

description
PREDICTED: exostosin-like 3

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0030516 regulation of axon extension biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001888 glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K02370 EXTL3; alpha-1,4-N-acetylglucosaminyltransferase EXTL3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255470.3 False 3955 mRNA 0.50 6 32854082 32890441
XM_007255471.3 True 4004 mRNA 0.50 6 32864967 32890441

Neighbor

gene id symbol gene type direction distance location
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding upstream 162421 32591870 ~ 32691661 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding upstream 1023918 31824231 ~ 31830164 (+)
rbm25 rbm25,LOC107568207,LOC107704053,LOC107669447 coding upstream 1037968 31803424 ~ 31816114 (+)
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding upstream 1071863 31767544 ~ 31782219 (+)
nfkbie NA coding upstream 1094572 31750167 ~ 31759510 (+)
kif13b kif13b coding downstream 41169 32931610 ~ 32970019 (+)
filip1 filip1 coding downstream 125979 33016420 ~ 33067727 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding downstream 180370 33070811 ~ 33076140 (+)
naa20 naa20 coding downstream 541482 33431923 ~ 33436804 (+)
cfap61 NA coding downstream 553961 33444402 ~ 33498321 (+)
G23075 NA non-coding upstream 137637 32711872 ~ 32716445 (+)
G23062 NA non-coding upstream 306618 32525062 ~ 32547464 (+)
G23057 NA non-coding upstream 326358 32522014 ~ 32527724 (+)
G23053 NA non-coding upstream 361341 32492255 ~ 32492741 (+)
G23022 NA non-coding upstream 496829 32356637 ~ 32357253 (+)
G23116 NA non-coding downstream 3800 32894241 ~ 32894650 (+)
G23251 NA non-coding downstream 281928 33172369 ~ 33172714 (+)
G23253 NA non-coding downstream 299520 33189961 ~ 33190715 (+)
G23255 NA non-coding downstream 316871 33207312 ~ 33207532 (+)
G23282 NA non-coding downstream 455371 33345812 ~ 33346060 (+)
LOC103042732 NA other upstream 12736 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 27143 32822344 ~ 32826939 (+)
G22834 NA other upstream 1359184 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 2341256 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 2590232 30259308 ~ 30263850 (+)
LOC103037425 LOC108426312 other downstream 186183 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 193201 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 697088 33587529 ~ 33595711 (+)
cebpzos cebpzos other downstream 887501 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 1003895 33894336 ~ 33964508 (+)

Expression


Co-expression Network