rbm25 (rbm25,LOC107568207,LOC107704053,LOC107669447)


Basic Information

Item Value
gene id rbm25
gene name rbm25,LOC107568207,LOC107704053,LOC107669447
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31803424 ~ 31816114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255487.2
TTGCTGTGAGCGGCAGTGTGCCGGTGAGCGCTGCTGTTCGGTGTGAGCTAAGCTAGCGCGCCGCAGAAAGACGGAGACCAGAAACCGCAGTAATAGCCGCCGAGTCGGGTGGGTTGTCTACCCAAGATGTCCTTCCCTCCTCATCTCAACCGCCCTCAGATTGGCATTCCTGCCATGCCCCCAGGGATCCCACCACCACAGTTTGCAGGATTTCCTCCATCAATGCCCCCAGGCACCCCGATGATTCCAGTTCACATGGGTATTATGACTCCAACCCCCACGGTACTTGTGCCCACCTCAGTGCCAGTGGTTAGTAAGGTAGCTGCCCCGAGGAAGGAAGCTCCAGCTTCTCGTGCCAAGGAAAATGATGAAAACAGTGGGCCTACGACCACAGTGTTTGTTGGAAACATTTCAGAGAAAGCTTCAGACATGTTGATCAGACAGCTGCTCTCAAAATGTGGTTTAGTCTTAAGTTGGAAACGAGTTCAAGGAGCTTCAGGAAAACTACAAGCATTTGGTTTTTGTGAGTATAAGGAGCCAGAATCGACTCTGAGGGCCCTAAGGCTGCTCCATGAACTGCAGGTGGGAGAGAAGAAATTGCTGGTGAAAGTGGATGCCAAAACCAAAGCCCAGCTGGATGAGTGGAAGGCCAAAAAAAGGAGCTCCAATGGGAATAACAAAGCTGGGGAGGGAGGTGAGGATGAAGAGGAAGTTTTGGATGAAGAAACTCAGAAACGGGACCAAATAGTGAAGGGAGCAATAGATGGCCTTATCCGCGAATATTCCAACGAACTCAATGCACCCTCTCAGGATGATGAATCTAGCCGTCGcaagaagaaaaaggaaaaaaaagaagagGAGGACATCAATGCCATAGAAATGGAAGAGGACAAAAGAGATTTGATCTCCAGGGAGATCAACAAATTTCGAGACACTCACAAGaaactggaggaggagaaaggcAAGCGGGAGAAGGAGCGACAGGAGCTTGAGCGGGAGCGGAGAGAGCGGGACAAAGAGCGTGAAAGGGAACGAGAGAGAAGAGAccgagagagggagaaggaccgagagagggagagggagcgggagcgtgagagagaaagggagagggaTAGAGACAGGGAGCGTGACCGGGAGCGTGAACGAACAAAGgagcgcgagagagaaagagactgggaCAGAAGCAGAGACCACAGTGAGGATCGCAGCAGGTCCAGAGAACAAAGCCGAGATCGAGACAGAGACAAGGATAAGAAGCGGGACCGtgaggaagatgaggaggaaGCATATGAGCGTCGCAAGCTGGAGAGGAAACTCAGGGAGAAGGAGGCTGCCTATCAGGAGCGTCTGAAGAACTGGGagctgagagagaggaagaaagcaAGAGACTACGCCAAGGAAGCAGAGCGAGAAGATGAACGCCGacgagagacaGCTAAAGAAGGCAAACGACTGAAAGAATTCCTGGAGGACTATGATGATGACAGAGATGACCCAAAATATTACAAGGGCAGCGCACTGCAGAAGCGTCTGCGGGACCGAGAGAAGGAGATTGAGCTTGATGAGAGAGACAGGaagcgagagaaagaagaaCTGGAGGAGATCAGGCAGAGGCTGCTGGCTGAGGGACATCCTGATCCAGATGCAGAGCTGCGAAGGATGGAAGAGGAGGCTGAGCGTCTGAGACAGCCGCCTGTGAAGCCAGAGCCCGAAGAGGAACGTGAGCACAAGCCGTCTCGAGAAGAGCGAGAACGTGGCCGAGAACGCGAACGACGCAGACCTGTCGAAACACACGTTCACACGTCCCGGTCAGACGATGACGTGGAGGATGGAGAGGAAATTGAGGATGAAGAAGACTCTAAACCATGCCTCAAGCCCACTATGAGGCCCATTATGGCTGCCCCTTCTGTGTCCTCTGCCAGTGGTAATGCCACACCCAACACACCCAGGGAAGAGTCGCCATGCGGAATCATCATTCCTCACGAAAACTCGCCTCCAGAGATACAGCCACAAGAGGAGCACCGGCCCAAGATCGGTCTGAGTCTTAAATTAGGTGCCACAGGCAGTCCTAGCCAGCCAAATGTGGGCAAACGAAAGAAACTAGCAGTGGAAAGCGTCTTCAACCGCTTTGATGACGACGAAGTAGACGAGGTGCCTCGAAAGAGGAAGCTAGTGCCTTTGGACTATGAAGATGAAGAGAAGGCCAGTCTGGGAGCAGACGTGGCCGGATCAGGAGGGGGCAAAGGGGCCAACACAGAGGAGAAACGCAAGCACATAAAGAGTCTAATTGAGAAAATCCCCACTGCCAAACCTGAGCTCTTCAACTACCCATTAGACTGGTCTGTTGTAGACACGACTCTTATGGAGAAGCGAATCCGGCCTTGGATAAATAAGAAGATTGTGGAGTATATTGGCGAGGAGGAAGCCACATTAGTTGACTTTGTTTGCTCAAAGGTAATGGCTCACAGTACGCCACAAGGCATTTTAGATGATGTTGCAATGGTGTTGGATGAAGAAGCTGAAGTTTTCATTGTGAAGATGTGGAGGTTATTGATTTACGAAACTGAGGCCAAGAAGATCGGACTTGGCAAATGAACAAGCACTGTATTAGGATCAAATCTGCTCTGGACTTCCCTGATTCAACAGTTCAGTTGCTGCAGAGAGACATGAGCATCTTGGGGAAACTCCACAGTTAAAATTTTAACCCAGCATCTACTCAGCAGTCCCatgtctgtttttgtgtttaagtTAGTGAGCACTGGATCTAAAAACTTTGTCCTTgctattttttctgtttaccaATGAAAAAGTTGGTGAGGTCCTTTTTCCTCAGGGCTCATCTGctatgtggatttttttttttagcctcaTCATCCCTGCTTTATAGTAGAAAGGATGTCTCAAAGAAAAGTGTCTTGTAGACTCTCATACTGTAATCTGCCAATCAAGTCTGGgttacacattttatttgatcCTTTTTGGTAGCTGCGTTGAGTTGTACCAAAGAGTTTATCCCCTCCTGGAGTCTCCCATACTGACAACGTTCCACTTAAATTGGAAGAATGCAGAACGGATTTGACCCTACACTGTTCCGGAAGTCTCTGGCTAAATTGACCTTGGTTGTGCAAACATGAACAGTGGtctctgtttttgtatttactagtggatgtgttttcaataaaggtgatcttttttaaataaaa
>XM_022684394.1
TGCCGGTGAGCGCTGCTGTTCGGTGTGAGCTAAGCTAGCGCGCCGCAGAAAGACGGAGACCAGAAACCGCAGTAATAGCCGCCGAGTCGGGTGAGTGGCGGACACGCAGCGATGTTCAGAAGCTGAGCTCTGGTCTCTGAGTCTCCAGACCGAGCTGAGGTGGGTTGTCTACCCAAGATGTCCTTCCCTCCTCATCTCAACCGCCCTCAGATTGGCATTCCTGCCATGCCCCCAGGGATCCCACCACCACAGTTTGCAGGATTTCCTCCATCAATGCCCCCAGGCACCCCGATGATTCCAGTTCACATGGGTATTATGACTCCAACCCCCACGGTACTTGTGCCCACCTCAGTGCCAGTGGTTAGTAAGGTAGCTGCCCCGAGGAAGGAAGCTCCAGCTTCTCGTGCCAAGGAAAATGATGAAAACAGTGGGCCTACGACCACAGTGTTTGTTGGAAACATTTCAGAGAAAGCTTCAGACATGTTGATCAGACAGCTGCTCTCAAAATGTGGTTTAGTCTTAAGTTGGAAACGAGTTCAAGGAGCTTCAGGAAAACTACAAGCATTTGGTTTTTGTGAGTATAAGGAGCCAGAATCGACTCTGAGGGCCCTAAGGCTGCTCCATGAACTGCAGGTGGGAGAGAAGAAATTGCTGGTGAAAGTGGATGCCAAAACCAAAGCCCAGCTGGATGAGTGGAAGGCCAAAAAAAGGAGCTCCAATGGGAATAACAAAGCTGGGGAGGGAGGTGAGGATGAAGAGGAAGTTTTGGATGAAGAAACTCAGAAACGGGACCAAATAGTGAAGGGAGCAATAGATGGCCTTATCCGCGAATATTCCAACGAACTCAATGCACCCTCTCAGGATGATGAATCTAGCCGTCGcaagaagaaaaaggaaaaaaaagaagagGAGGACATCAATGCCATAGAAATGGAAGAGGACAAAAGAGATTTGATCTCCAGGGAGATCAACAAATTTCGAGACACTCACAAGaaactggaggaggagaaaggcAAGCGGGAGAAGGAGCGACAGGAGCTTGAGCGGGAGCGGAGAGAGCGGGACAAAGAGCGTGAAAGGGAACGAGAGAGAAGAGAccgagagagggagaaggaccgagagagggagagggagcgggagcgtgagagagaaagggagagggaTAGAGACAGGGAGCGTGACCGGGAGCGTGAACGAACAAAGgagcgcgagagagaaagagactgggaCAGAAGCAGAGACCACAGTGAGGATCGCAGCAGGTCCAGAGAACAAAGCCGAGATCGAGACAGAGACAAGGATAAGAAGCGGGACCGtgaggaagatgaggaggaaGCATATGAGCGTCGCAAGCTGGAGAGGAAACTCAGGGAGAAGGAGGCTGCCTATCAGGAGCGTCTGAAGAACTGGGagctgagagagaggaagaaagcaAGAGACTACGCCAAGGAAGCAGAGCGAGAAGATGAACGCCGacgagagacaGCTAAAGAAGGCAAACGACTGAAAGAATTCCTGGAGGACTATGATGATGACAGAGATGACCCAAAATATTACAAGGGCAGCGCACTGCAGAAGCGTCTGCGGGACCGAGAGAAGGAGATTGAGCTTGATGAGAGAGACAGGaagcgagagaaagaagaaCTGGAGGAGATCAGGCAGAGGCTGCTGGCTGAGGGACATCCTGATCCAGATGCAGAGCTGCGAAGGATGGAAGAGGAGGCTGAGCGTCTGAGACAGCCGCCTGTGAAGCCAGAGCCCGAAGAGGAACGTGAGCACAAGCCGTCTCGAGAAGAGCGAGAACGTGGCCGAGAACGCGAACGACGCAGACCTGTCGAAACACACGTTCACACGTCCCGGTCAGACGATGACGTGGAGGATGGAGAGGAAATTGAGGATGAAGAAGACTCTAAACCATGCCTCAAGCCCACTATGAGGCCCATTATGGCTGCCCCTTCTGTGTCCTCTGCCAGTGGTAATGCCACACCCAACACACCCAGGGAAGAGTCGCCATGCGGAATCATCATTCCTCACGAAAACTCGCCTCCAGAGATACAGCCACAAGAGGAGCACCGGCCCAAGATCGGTCTGAGTCTTAAATTAGGTGCCACAGGCAGTCCTAGCCAGCCAAATGTGGGCAAACGAAAGAAACTAGCAGTGGAAAGCGTCTTCAACCGCTTTGATGACGACGAAGTAGACGAGGTGCCTCGAAAGAGGAAGCTAGTGCCTTTGGACTATGAAGATGAAGAGAAGGCCAGTCTGGGAGCAGACGTGGCCGGATCAGGAGGGGGCAAAGGGGCCAACACAGAGGAGAAACGCAAGCACATAAAGAGTCTAATTGAGAAAATCCCCACTGCCAAACCTGAGCTCTTCAACTACCCATTAGACTGGTCTGTTGTAGACACGACTCTTATGGAGAAGCGAATCCGGCCTTGGATAAATAAGAAGATTGTGGAGTATATTGGCGAGGAGGAAGCCACATTAGTTGACTTTGTTTGCTCAAAGGTAATGGCTCACAGTACGCCACAAGGCATTTTAGATGATGTTGCAATGGTGTTGGATGAAGAAGCTGAAGTTTTCATTGTGAAGATGTGGAGGTTATTGATTTACGAAACTGAGGCCAAGAAGATCGGACTTGGCAAATGAACAAGCACTGTATTAGGATCAAATCTGCTCTGGACTTCCCTGATTCAACAGTTCAGTTGCTGCAGAGAGACATGAGCATCTTGGGGAAACTCCACAGTTAAAATTTTAACCCAGCATCTACTCAGCAGTCCCatgtctgtttttgtgtttaagtTAGTGAGCACTGGATCTAAAAACTTTGTCCTTgctattttttctgtttaccaATGAAAAAGTTGGTGAGGTCCTTTTTCCTCAGGGCTCATCTGctatgtggatttttttttttagcctcaTCATCCCTGCTTTATAGTAGAAAGGATGTCTCAAAGAAAAGTGTCTTGTAGACTCTCATACTGTAATCTGCCAATCAAGTCTGGgttacacattttatttgatcCTTTTTGGTAGCTGCGTTGAGTTGTACCAAAGAGTTTATCCCCTCCTGGAGTCTCCCATACTGACAACGTTCCACTTAAATTGGAAGAATGCAGAACGGATTTGACCCTACACTGTTCCGGAAGTCTCTGGCTAAATTGACCTTGGTTGTGCAAACATGAACAGTGGtctctgtttttgtatttactagtggatgtgttttcaataaaggtgatcttttttaaataaaa
>XM_022684398.1
AGAAAAACGGGGAGTTTAAACTGGTTATTTAACCTACAGATCGTGACTCACAGTGGAGCGTTTATCCTGCCGTTAAATCACAGAACAACCTGCTGAGCTAGGTGGGTTGTCTACCCAAGATGTCCTTCCCTCCTCATCTCAACCGCCCTCAGATTGGCATTCCTGCCATGCCCCCAGGGATCCCACCACCACAGTTTGCAGGATTTCCTCCATCAATGCCCCCAGGCACCCCGATGATTCCAGTTCACATGGGTATTATGACTCCAACCCCCACGGTACTTGTGCCCACCTCAGTGCCAGTGGTTAGTAAGGTAGCTGCCCCGAGGAAGGAAGCTCCAGCTTCTCGTGCCAAGGAAAATGATGAAAACAGTGGGCCTACGACCACAGTGTTTGTTGGAAACATTTCAGAGAAAGCTTCAGACATGTTGATCAGACAGCTGCTCTCAAAATGTGGTTTAGTCTTAAGTTGGAAACGAGTTCAAGGAGCTTCAGGAAAACTACAAGCATTTGGTTTTTGTGAGTATAAGGAGCCAGAATCGACTCTGAGGGCCCTAAGGCTGCTCCATGAACTGCAGGTGGGAGAGAAGAAATTGCTGGTGAAAGTGGATGCCAAAACCAAAGCCCAGCTGGATGAGTGGAAGGCCAAAAAAAGGAGCTCCAATGGGAATAACAAAGCTGGGGAGGGAGGTGAGGATGAAGAGGAAGTTTTGGATGAAGAAACTCAGAAACGGGACCAAATAGTGAAGGGAGCAATAGATGGCCTTATCCGCGAATATTCCAACGAACTCAATGCACCCTCTCAGGATGATGAATCTAGCCGTCGcaagaagaaaaaggaaaaaaaagaagagGAGGACATCAATGCCATAGAAATGGAAGAGGACAAAAGAGATTTGATCTCCAGGGAGATCAACAAATTTCGAGACACTCACAAGaaactggaggaggagaaaggcAAGCGGGAGAAGGAGCGACAGGAGCTTGAGCGGGAGCGGAGAGAGCGGGACAAAGAGCGTGAAAGGGAACGAGAGAGAAGAGAccgagagagggagaaggaccgagagagggagagggagcgggagcgtgagagagaaagggagagggaTAGAGACAGGGAGCGTGACCGGGAGCGTGAACGAACAAAGgagcgcgagagagaaagagactgggaCAGAAGCAGAGACCACAGTGAGGATCGCAGCAGGTCCAGAGAACAAAGCCGAGATCGAGACAGAGACAAGGATAAGAAGCGGGACCGtgaggaagatgaggaggaaGCATATGAGCGTCGCAAGCTGGAGAGGAAACTCAGGGAGAAGGAGGCTGCCTATCAGGAGCGTCTGAAGAACTGGGagctgagagagaggaagaaagcaAGAGACTACGCCAAGGAAGCAGAGCGAGAAGATGAACGCCGacgagagacaGCTAAAGAAGGCAAACGACTGAAAGAATTCCTGGAGGACTATGATGATGACAGAGATGACCCAAAATATTACAAGGGCAGCGCACTGCAGAAGCGTCTGCGGGACCGAGAGAAGGAGATTGAGCTTGATGAGAGAGACAGGaagcgagagaaagaagaaCTGGAGGAGATCAGGCAGAGGCTGCTGGCTGAGGGACATCCTGATCCAGATGCAGAGCTGCGAAGGATGGAAGAGGAGGCTGAGCGTCTGAGACAGCCGCCTGTGAAGCCAGAGCCCGAAGAGGAACGTGAGCACAAGCCGTCTCGAGAAGAGCGAGAACGTGGCCGAGAACGCGAACGACGCAGACCTGTCGAAACACACGTTCACACGTCCCGGTCAGACGATGACGTGGAGGATGGAGAGGAAATTGAGGATGAAGAAGACTCTAAACCATGCCTCAAGCCCACTATGAGGCCCATTATGGCTGCCCCTTCTGTGTCCTCTGCCAGTGGTAATGCCACACCCAACACACCCAGGGAAGAGTCGCCATGCGGAATCATCATTCCTCACGAAAACTCGCCTCCAGAGATACAGCCACAAGAGGAGCACCGGCCCAAGATCGGTCTGAGTCTTAAATTAGGTGCCACAGGCAGTCCTAGCCAGCCAAATGTGGGCAAACGAAAGAAACTAGCAGTGGAAAGCGTCTTCAACCGCTTTGATGACGACGAAGTAGACGAGGTGCCTCGAAAGAGGAAGCTAGTGCCTTTGGACTATGAAGATGAAGAGAAGGCCAGTCTGGGAGCAGACGTGGCCGGATCAGGAGGGGGCAAAGGGGCCAACACAGAGGAGAAACGCAAGCACATAAAGAGTCTAATTGAGAAAATCCCCACTGCCAAACCTGAGCTCTTCAACTACCCATTAGACTGGTCTGTTGTAGACACGACTCTTATGGAGAAGCGAATCCGGCCTTGGATAAATAAGAAGATTGTGGAGTATATTGGCGAGGAGGAAGCCACATTAGTTGACTTTGTTTGCTCAAAGGTAATGGCTCACAGTACGCCACAAGGCATTTTAGATGATGTTGCAATGGTGTTGGATGAAGAAGCTGAAGTTTTCATTGTGAAGATGTGGAGGTTATTGATTTACGAAACTGAGGCCAAGAAGATCGGACTTGGCAAATGAACAAGCACTGTATTAGGATCAAATCTGCTCTGGACTTCCCTGATTCAACAGTTCAGTTGCTGCAGAGAGACATGAGCATCTTGGGGAAACTCCACAGTTAAAATTTTAACCCAGCATCTACTCAGCAGTCCCatgtctgtttttgtgtttaagtTAGTGAGCACTGGATCTAAAAACTTTGTCCTTgctattttttctgtttaccaATGAAAAAGTTGGTGAGGTCCTTTTTCCTCAGGGCTCATCTGctatgtggatttttttttttagcctcaTCATCCCTGCTTTATAGTAGAAAGGATGTCTCAAAGAAAAGTGTCTTGTAGACTCTCATACTGTAATCTGCCAATCAAGTCTGGgttacacattttatttgatcCTTTTTGGTAGCTGCGTTGAGTTGTACCAAAGAGTTTATCCCCTCCTGGAGTCTCCCATACTGACAACGTTCCACTTAAATTGGAAGAATGCAGAACGGATTTGACCCTACACTGTTCCGGAAGTCTCTGGCTAAATTGACCTTGGTTGTGCAAACATGAACAGTGGtctctgtttttgtatttactagtggatgtgttttcaataaaggtgatcttttttaaataaaa

Function

symbol description
rbm25 Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of apoptotic process. Located in nuclear speck.

NR:

description
PREDICTED: RNA-binding protein 25

GO: NA

KEGG:

id description
K12822 RBM25, S164; RNA-binding protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255487.2 False 3203 mRNA 0.49 18 31803424 31816114
XM_022684394.1 True 3254 mRNA 0.49 18 31803442 31816114
XM_022684398.1 False 3196 mRNA 0.49 18 31803792 31816114

Neighbor

gene id symbol gene type direction distance location
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding upstream 21205 31767544 ~ 31782219 (+)
nfkbie NA coding upstream 43914 31750167 ~ 31759510 (+)
tcte1 NA coding upstream 75063 31723005 ~ 31728361 (+)
rnf8 rnf8 coding upstream 89617 31707054 ~ 31713807 (+)
LOC103022697 NA coding upstream 111994 31665102 ~ 31691430 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding downstream 8117 31824231 ~ 31830164 (+)
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding downstream 775756 32591870 ~ 32691661 (+)
extl3 extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127 coding downstream 1037968 32854082 ~ 32890441 (+)
kif13b kif13b coding downstream 1115496 32931610 ~ 32970019 (+)
filip1 filip1 coding downstream 1200306 33016420 ~ 33067727 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding upstream 10530 31789672 ~ 31792894 (+)
G22845 NA non-coding upstream 255324 31547750 ~ 31548100 (+)
G22844 NA non-coding upstream 255907 31547192 ~ 31547517 (+)
G22837 NA non-coding upstream 295515 31507450 ~ 31507909 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding upstream 298073 31500015 ~ 31505351 (+)
G23022 NA non-coding downstream 540523 32356637 ~ 32357253 (+)
G23053 NA non-coding downstream 676141 32492255 ~ 32492741 (+)
G23057 NA non-coding downstream 705900 32522014 ~ 32527724 (+)
G23062 NA non-coding downstream 708948 32525062 ~ 32547464 (+)
G23075 NA non-coding downstream 895758 32711872 ~ 32716445 (+)
G22834 NA other upstream 308526 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 1290598 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1539574 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2621293 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2635511 29152052 ~ 29167913 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1006230 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1020938 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1260510 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1267528 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 1771415 33587529 ~ 33595711 (+)

Expression


Co-expression Network