nfkbie


Basic Information

Item Value
gene id nfkbie
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31750167 ~ 31759510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255490.3
gttctctctctctctctggtgagaCAGTTTTAGGAGGCACTAGTTCACAGTTTTAACGGCGGTTTAAACTGGTCTGTTGGAGGAGTCTCTCCGATCAGACGGGTGTTTTAAGGCAGTAAGTTAAGGTAGTTAAAGTGTTTAGGCGGAGGTGTTAGTGCCTCCAGGCGGTAGCGGGGGTTTAGTTTGTGTAAGTTAGGCCGTAGTTCTGCGTTGGAAGAGAATAGAGaagctggaggagctgcagaaggaggaggagggcaTGAGACACGACGACGGGCTGCTCTGGTTTCACAATGGCGCGGCGGTGATGTTGTTCAGGTGAAGCGCGGATCCTCAGCTTGCGAGTCCGGACACAACCAGCGCTTATTTCGGGTACTATGGAGCCGAGCGGCCGGGCGAAGGGCAAGTTTGAGTCTGAGGAGAATCGGACTGACTCCGTAATCGACTCCGGTATCGACTCGTTCAGATCTTTACCCAGAGACGAGCCGCGGTTGAGCGGCGCTGCCGGGAGCTCCGCGCCCGGGGAGCAGGACAAGCTGAGCGGGGGGGACGAGCGGCTGGACTCGGCCTACGGGTCCTCCTCCATCGTGGACAATCTGAGCGAAATCATCCCCGATAAATGCAGCATTTCAGGAACGCTGAGCTCCCAGAACACAGAGGAAAACACAgaggacgaggaggaggaggaagaaaaccTCCTAACTACTGTCACAGAAGACGGAGACACAATTGTCCACTTGGTCATTATCCATGAATACAAAGCAGCTGCCTACGACCTGATAAGCATATTGCCAAAAGAGGTCCTGGACATTCAAAATAACTTGTATCAGACACCAATGCATCTTGCTGTCTACCTGAACCAGCCTGATGTGGTGAAGTTGTTGAAGGAGAATGGGGCCTGCTTGGAGCTACAGGACCAGGATGGGAACACCCCACTGCATGTAGCCTGTGAACATGGCCGGCTAGAGTGTGCCAATGAGATGATTCTGGATAGTTCACCCACCAAACTGGTCCAAGTGTTTGAGACTCAGAACTGGAGAGgtctcacttgcctgcATGTGGCCACGTTGCACAAACAGCACCGGCTCATGAAACTCCTGATGAAGAAAGGTGTGGACTTGAACATCCAGGAAGGTACAAGTGGGAAGACGGCGTTACATATTGCGGTTGAGCTGCATGACAATGAGGCTGTCGCTCTGCTTCTGATTAAGGGTGCCAACGTGGATGCAGCAATGCTAAACGGCTGCACAGCTCTACACCTGGCTGTTGGCCGGCAGGATGCCACCATTACCACCCGCCTGTGTCAAGCAGGAGCTGACAAAATGATCCGGAACATGGAAGATGAGACAGCACTAGACCTCGCAGATGGCAATGATGATATACTTGCTCTGTTCCCGTTTGATGACATTCAGATCATGGGCAGGACTGTTGGTGTGAACTTCTGAAAGTTTTTCTGACCGGATGGGAGAAATAATATGTTCAGTGTTTGAGATTTAAACTCCAGTAATTAAACAACTTATGGATTTCCCTTTAGTACCTTTCTATAGCCTCATTTATTTGagataatgtgtgtgttgtagttgtACATTTATATTTGGGATGACACACAATGTCACAATTGATCTAGAGCTGATCTAGAATGATGAATTGAACAACCACAATGGCATCTTTAATTTGAAATGTGTATACAACATGCATATAATGGCAGTACCTTTTCATTCAATGAATCTATGTGTAGCATATTTTAACATAACGATTTGTAATGAAAGGTTTTCTGCTCATTTGATGTGAATTCATGCAGCAAAAGATTCTTACACTACTTTGGTAAATCAGTCAAGTTAAACCAGAAA

Function

NR:

description
NF-kappa-B inhibitor epsilon

GO: NA

KEGG:

id description
K05872 NFKBIE; NF-kappa-B inhibitor epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255490.3 True 1850 mRNA 0.48 6 31750167 31759510

Neighbor

gene id symbol gene type direction distance location
tcte1 NA coding upstream 21806 31723005 ~ 31728361 (+)
rnf8 rnf8 coding upstream 36360 31707054 ~ 31713807 (+)
LOC103022697 NA coding upstream 58737 31665102 ~ 31691430 (+)
ppp2r5a ppp2r5a coding upstream 91954 31612513 ~ 31658213 (+)
dtl dtl coding upstream 141361 31598684 ~ 31608806 (+)
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding downstream 8034 31767544 ~ 31782219 (+)
rbm25 rbm25,LOC107568207,LOC107704053,LOC107669447 coding downstream 43914 31803424 ~ 31816114 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding downstream 64721 31824231 ~ 31830164 (+)
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding downstream 832360 32591870 ~ 32691661 (+)
extl3 extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127 coding downstream 1094572 32854082 ~ 32890441 (+)
G22845 NA non-coding upstream 202067 31547750 ~ 31548100 (+)
G22844 NA non-coding upstream 202650 31547192 ~ 31547517 (+)
G22837 NA non-coding upstream 242258 31507450 ~ 31507909 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding upstream 244816 31500015 ~ 31505351 (+)
G22822 slc30a1 non-coding upstream 269996 31395732 ~ 31480171 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding downstream 30162 31789672 ~ 31792894 (+)
G23022 NA non-coding downstream 597127 32356637 ~ 32357253 (+)
G23053 NA non-coding downstream 732745 32492255 ~ 32492741 (+)
G23057 NA non-coding downstream 762504 32522014 ~ 32527724 (+)
G23062 NA non-coding downstream 765552 32525062 ~ 32547464 (+)
G22834 NA other upstream 255269 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 1237341 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1486317 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2568036 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2582254 29152052 ~ 29167913 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1062834 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1077542 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1317114 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1324132 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 1828019 33587529 ~ 33595711 (+)

Expression


Co-expression Network