tcte1


Basic Information

Item Value
gene id tcte1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31723005 ~ 31728361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255491.3
CGCTTCCTTGTCGCCATAACGACTGGAGACTCTTGTGTTGGCGGTGAACTCTGGAGAACGGAAGAAGAGAGGACTCATCTAAAGACTTGACTTCAGCCCTTGTGGATTGTGACAACAAAGAAATGCCAGTCATGAGTATGTCCATGGGCAAAGCTCCAGCTGGCATTAACCCACCAGTAAAGATGCTCAATCCTGCTGCAGATCCTCGAAAGATGCGAAGAATTATTGCTGAAGACCCAGAATGGTCTCTTGCTGTTGTGCCTTCCTTAAAAAACTTATGTCTACAGCACATAGTGAATCATTTTGAAGAGAAGCCTATTCTGAATGAGCTCCTGCCTAGTCAGAAGGCTTTTGTCCTGGAGAAGCTTCCTACCTTCCTGCCTTTGAGCCTAACAGCCAATCTGATCAGTGATGAGGGTTACTGGAGACGCTGCTGTGAGGACCGCTGGGGCCAGAGGGATGTTTCTGAGTATGACCACAGCTGGAAACGCATGTTCTTTGAGCGTCATCTGGAGAACATTATTGAACTTTTCATTCCCGACCAAACTGAGCCCAAATCAGTGCTGGATGTTGTGCCACTCTGTCAGAATTATGTTAGGAGGCTAAAGATAACTCAGCTTCTGCCACCTATCAGAAAACCACCAAAGTTCAATGAAGATGATGCCTCAGAATCTGCCAGCGATTTGGGCGATGATGGGCCATCAATAGACCACTTTGACTTTAGAATCCTGCTGAACAAGCTTACCAACCTGGAGGAACTGCAGTTGGTTTATGGAGTGAGAGGGTGTGGCATGAACTTTGAATGGAATCTATTCGAGTTCACCTTCAGTGATTGTCAGTTCCTGGCCAAGGCCCTGCAATCGTGCACAACTTTGAAGATTCTTAAAATCAATCAGAGTAACGTGGATGATGATAAGTGCCGGACGCTGGTGAGCAACCTGCTAGATCATCCTTCTCTGCTGGAGCTCGACCTCTCACACAATATCATAGGTGACAGAGGAGCAAGAGCCCTCGGGAAGCTCTTAAACCGCAGTCACCTGAAGCAGTTGGACATTTATGACAACAAAATCAAGGGGCCAGGAGCCCAAGCTTTAGCCCACGCCCTCTCTAAAAACACCCCTTTAGAGTCCCTCAACCTGAGACTGAACCAGAGAGGGGATGAAGGGGGCCAAGCTTTGGCCCAGGCCCTGTTAAAGAATTGCATCCTCCTAAACCTTCACCTGGGAGCCAATGAGCTGACAGAGCCCACAGCCACAGCACTGTCCCACATGTTAGTGCACAACTCAACTCTGAAGAGGCTAAATCTGTCCTGCAATAGACTGGGAGAGGATGGTGGGAAGGCAATGGAAGAGGGAATGTCGCACAACAGCAGCCTGCTGGAGTGTGATATCCGCCTCACTGGTGTCAGACTGGAGAGTGAGTACAGCATCAAGAAACACTTGCACACCAACCAGGCCAAAGGCAGGCAGGACACAGCAGCCTCCAGATAATTCCCAGACAAGGGAGGATTAAATAACCTTCATTCATTTAAACCAATCACACATAGAAATGTGGTGTTGTCAATATGATCTTTACACAAATGCGTGTGGGACTTTGGATAtaggcataaataaataaagaactgttaaagaaaagttaaa
>XM_022684378.1
CTGGAGACTCTTGTGTTGGCGGTGAACTCTGGAGAACGGAAGAGAGGACTCATCTAAAGACTTGACTTCAGCCCTTGTGGATTGTGACAACAAAGAAATGCCAGTCATGAGTATGTCCATGGGCAAAGCTCCAGCTGGCATTAACCCACCAGTAAAGATGCTCAATCCTGCTGCAGATCCTCGAAAGATGCGAAGAATTATTGCTGAAGACCCAGAATGGTCTCTTGCTGTTGTGCCTTCCTTAAAAAACTTATGTCTACAGCACATAGTGAATCATTTTGAAGAGAAGCCTATTCTGAATGAGCTCCTGCCTAGTCAGAAGGCTTTTGTCCTGGAGAAGCTTCCTACCTTCCTGCCTTTGAGCCTAACAGCCAATCTGATCAGTGATGAGGGTTACTGGAGACGCTGCTGTGAGGACCGCTGGGGCCAGAGGGATGTTTCTGAGTATGACCACAGCTGGAAACGCATGTTCTTTGAGCGTCATCTGGAGAACATTATTGAACTTTTCATTCCCGACCAAACTGAGCCCAAATCAGTGCTGGATGTTGTGCCACTCTGTCAGAATTATGTTAGGAGGCTAAAGATAACTCAGCTTCTGCCACCTATCAGAAAACCACCAAAGTTCAATGAAGATGATGCCTCAGAATCTGCCAGCGATTTGGGCGATGATGGGCCATCAATAGACCACTTTGACTTTAGAATCCTGCTGAACAAGCTTACCAACCTGGAGGAACTGCAGTTGGTTTATGGAGTGAGAGGGTGTGGCATGAACTTTGAATGGAATCTATTCGAGTTCACCTTCAGTGATTGTCAGTTCCTGGCCAAGGCCCTGCAATCGTGCACAACTTTGAAGATTCTTAAAATCAATCAGAGTAACGTGGATGATGATAAGTGCCGGACGCTGGTGAGCAACCTGCTAGATCATCCTTCTCTGCTGGAGCTCGACCTCTCACACAATATCATAGGTGACAGAGGAGCAAGAGCCCTCGGGAAGCTCTTAAACCGCAGTCACCTGAAGCAGTTGGACATTTATGACAACAAAATCAAGGGGCCAGGAGCCCAAGCTTTAGCCCACGCCCTCTCTAAAAACACCCCTTTAGAGTCCCTCAACCTGAGACTGAACCAGAGAGGGGATGAAGGGGGCCAAGCTTTGGCCCAGGCCCTGTTAAAGAATTGCATCCTCCTAAACCTTCACCTGGGAGCCAATGAGCTGACAGAGCCCACAGCCACAGCACTGTCCCACATGTTAGTGCACAACTCAACTCTGAAGAGGCTAAATCTGTCCTGCAATAGACTGGGAGAGGATGGTGGGAAGGCAATGGAAGAGGGAATGTCGCACAACAGCAGCCTGCTGGAGTGTGATATCCGCCTCACTGGTGTCAGACTGGAGAGTGAGTACAGCATCAAGAAACACTTGCACACCAACCAGGCCAAAGGCAGGCAGGACACAGCAGCCTCCAGATAATTCCCAGACAAGGGAGGATTAAATAACCTTCATTCATTTAAACCAATCACACATAGAAATGTGGTGTTGTCAATATGATCTTTACACAAATGCGTGTGGGACTTTGGATAtaggcataaataaataaagaactgttaaagaaaagttaaa

Function

NR:

description
T-complex-associated testis-expressed protein 1

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255491.3 True 1640 mRNA 0.47 5 31723005 31728361
XM_022684378.1 False 1615 mRNA 0.47 5 31723027 31728361

Neighbor

gene id symbol gene type direction distance location
rnf8 rnf8 coding upstream 9198 31707054 ~ 31713807 (+)
LOC103022697 NA coding upstream 31575 31665102 ~ 31691430 (+)
ppp2r5a ppp2r5a coding upstream 64792 31612513 ~ 31658213 (+)
dtl dtl coding upstream 114199 31598684 ~ 31608806 (+)
LOC103025325 NA coding upstream 288792 31427579 ~ 31434213 (+)
nfkbie NA coding downstream 21806 31750167 ~ 31759510 (+)
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding downstream 39183 31767544 ~ 31782219 (+)
rbm25 rbm25,LOC107568207,LOC107704053,LOC107669447 coding downstream 75063 31803424 ~ 31816114 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding downstream 95870 31824231 ~ 31830164 (+)
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding downstream 863509 32591870 ~ 32691661 (+)
G22845 NA non-coding upstream 174905 31547750 ~ 31548100 (+)
G22844 NA non-coding upstream 175488 31547192 ~ 31547517 (+)
G22837 NA non-coding upstream 215096 31507450 ~ 31507909 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding upstream 217654 31500015 ~ 31505351 (+)
G22822 slc30a1 non-coding upstream 242834 31395732 ~ 31480171 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding downstream 61311 31789672 ~ 31792894 (+)
G23022 NA non-coding downstream 628276 32356637 ~ 32357253 (+)
G23053 NA non-coding downstream 763894 32492255 ~ 32492741 (+)
G23057 NA non-coding downstream 793653 32522014 ~ 32527724 (+)
G23062 NA non-coding downstream 796701 32525062 ~ 32547464 (+)
G22834 NA other upstream 228107 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 1210179 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1459155 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2540874 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2555092 29152052 ~ 29167913 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1093983 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1108691 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1348263 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1355281 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 1859168 33587529 ~ 33595711 (+)

Expression


Co-expression Network