LOC103022697


Basic Information

Item Value
gene id LOC103022697
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31665102 ~ 31691430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255494.3
GGAGTTCACTCTGAAGCGTGTTGGTCACTGGAGTGTTGAGTATCTCTTCACTGCTGCAGACTGTACTGATCTGTACTGTGGTGTACTATGCCCGTGTGATTGTTACGATGAGGAGGGGAAGCTATGATGATGTTACTGCACCGATACGACCTCATATGCGCTCTCTGGCCCAGCGGAGACGGTCAGCCCCGACACTGGTGTTTGGGAAAGCCCTGGGAATGTCCTGGTCTCCCATAAGGGAGGAGGCTCCATACCCCATGACTGTGGAGCAGAGCCCCTTTGTGCTCGGTTTGTCCACAGAGGACTCTGAGTTGCTTCTGGATGACACTGTCCAGCTGACTGAAGGACTGAAGACCAGAGAGAGACACCTGTTTCTTCTAACTGATGTGCTGGTCATTGCTAAGCTAAAgtCCTGTGCTAGTTACAGGCTAAAGCACAGAGTTGACCTGAAGGACCTCTGGGTGTGTGCATTAAAAAGTGAAGATGACGAAGTAGAAGATGAGGATGGAGAAATTGATGTTAAGACAACCATCCTTCTTGTctggtctgtctctctctgtctggtgTCTTTCAGTTCCCCTGAGGTTAAAGAACGCTGGTTGGATACTCTTCACAGGAAAGCCAGAGAGGCGAGACAGAAGGCAGGTTGCTGTTCTCCACCCCACAGTGTCCTGATGAAGGTCCTGAGCAGCACCATCACTaataaaactctAACTGGAGGTGGAATGGACTCTGTGATTGAGTTGTCTCTTCAAGGCAACGGAATCTCCGCCCTGCAGAAGGAGCTGTGCAAACAGGAGCCCCAACCTGAGCAGAGCATGGTAGATCATGAAGGCAGCACCGGGTCTAAGAAGAGTATATTCCCCTTCAGACTGAAGCGAAGCTCCACGGTCAGCGGCCTGCCCACACGCTCAGAGAAGAGGAAGAGCCTGCTGTTCGGCCAACCGCTGTCCAGAGACGCCCCACTGCCCAAACCCATCACTGATGTCCTTGTGCTGTTGTGTAGGAAGGGTCCGAGCACTGAGGGTGTTTTCAGAACGACCTGTAACAGTAGGAACCTTAATGCAGTCCGTGAACAGCTGGACTCTGGGACTGAAGTGGACATGGAGGCCCTGCCTGTGACTCTACTGGTTGGGCTGTTGAAGACATTCCTGAAGGAGCTTCCAGGCAGCCTGCTGGTGGCTGACCACTATGACAAGTGGGTGGAGGCTCTAGAgaaggaggagatggaggagaagTGTCATGAGATGAGAAAAATGGTGGAAAAGCTCCCTGAAGCCAATGGCCTCCTTCTGCAGTATGTGCTGTGTCTGCTCCACCACATCGCCCAGCGATCAAAGAGCAACAAAATGGATACCAAGAACCTAGCAGTGTGTATCGCCCCAACCCTCCTACAGGACAGCAGCCAGATGATGGAAGTCAACAAGGTCGAAAAGGTGACCAACTTAACCCAGTTCCTGATCGAAAACTGCTGTAAAATCCTTGGAGAAAAGATTCTGAGTCTACTTAGGGACCCAGAAGAAGAGGAGCTGGGAGATAACTCAGactCCATGTCTTCACATCAACACGACTCAGCCTATGACAGCACGGACCCTGATGGAGACGGAGACAGCGCAGAGGCACTGGGGCCACAGGAGGATGAAAAGGGGGCTCTGGGAAACTGCCAGATCAGAATTGAATGTACACATGTTGCCTCCTGCTCCTCAGATGCCATATTCGAGACTTTCACCAAACCTTTCAACCGCCGCTGCTCCGAGCCCTCCATTTTATCCTCAGCAGCTATTAAGAATCTCCGGGGCCTGGCACGGAGCCAAGACGACTGTTCCTGCCCTAGGGAGGAGTACACGGACCAGCCACTGAAGAAGCAGGTATCAGACGACTCCTTCCTGCATCCACAGTGCTGTTACAGGTCACTGACGAGGAAGCTGGCTGGGAGCCTGAACATGGACGCTGCCGTTAGCGTTTCTGCGCCAATTTCCAAGGCTTGCTCTTGCTCTTCATCCTTCTCTCTAGAAAGCACTGCCTCGAACGTGTCTGAAACCTCCGTGTTCATGGTGGCCACCTCCCCTCTGCCTTCCCCAGCTAGTCCGAGAAAGAGCCAAACCACATCCAAGCCGAGAGCAGAGGCAGTTAAAGCAGATTTAGATGTAAGGCGCCATTCGTCTCCCTTCAAAAGAGCTAAGAGCTTGGGAAACTTCTCCACCACTAGGGGGAGCACTAAGAAAGTCGATTGCCAGAAAGACACAGCTTTTTCGTGCGAGACGCTTCAGGAGGACTCCCAGAATGAAACAGAGGCTCCGGATGAACCCATGAGGCGCCAGCGGCCGCTCTCTGCCATCGAGGTCTTCCAGCACGTGGACAGTAGAACTCCCAGCGGCCTGCCAACCTACGAGCAGGCCGTACTCTCTGGGGCCCTGCCTGCTCCCCCTCAGTACCGAAAAATGACAGTGTATGAAGCCATTGAGCAAGGCAGGAAGTCTCGTCCCATGTCCATGAACGATTACATCCTGGACTCCACCCCTGCTAGCCAATTTATGGACTCAATTGCACACTCAATAGACAATAATGTGGGTCAGCAGGGGTCGTTCAGGCAGAGAGCCATGTCTGAGTCAGTAGCCCGAACGAAGTTTGAAAAAGTGAGCCGTAGATGCAGCCAGCCTGTGTTTGAGGAGTTCTCTTACGCAAAGGAGTCTTatgtgtaaatagttaaattttTGCTTAAGCGTTATTGGAGCTGGATTACTTTTCCCAGAGAACTGTTCAAATCAAATGTCAGTGTAAATTTCCCAAATTTCCATAGTCTGTGTAATCCTACGAGGATCATTCATAAAACTGCACAcatcagattcatactggattaaaatattttcaaaattgCAGGGACATTTCCCCAAACAGAGTTTAAGCCTAGTCTTGTagtacacagcattttaaatttttCCATTTCACTGAAAAATAATATAGTCTACGATTAGGCTTAAACCCTTTATTGAAAACTGTGTATACTTAATGTCAGACTTAAACAAAGCAACAACCacttatatagtaaatatatagtatatatgtaaaatgtacagtatttatgtacagtacagtatcaCCCCACAGTATTTATTCTTGAGAGTAAACACACtatgcagattcatactggattaaataataaatggatACGCACTTGTAAACTAATCCAGCTCCAATAGGACTTTACATGTTATATACACATTATGAGATCTATCACGGCACGTCTGTTGTAGTGCAGGGTTCTTCTAATTTGTAACAGCTATTTAATAtgctaattttaaaataatagtttcAGAATATTGCCAGCGTGAAGCTATgtaaatagatgtattaaaactatttttttattcttagttTTTGTATCATTCTTTTCAAGCACTTATATGGCACttgtatattagaaatgtttcATGTTACATTCACTTTATTTCACTACAATAAACACTGTTGTCTTTA
>XM_007255495.3
GAGTTCACTCTGAAGCGTGTTGGTCACTGGAGTGTTGAGTATCTCTTCACTGCTGCAGACTGTACTGATCTGTACTGTGGTGTACTATGCCCGTGTGATTGTTACGATGAGGAGGGGAAGCTATGATGATGTTACTGCACCGATACGACCTCATATGCGCTCTCTGGCCCAGCGGAGACGGTCAGCCCCGACACTGGTGTTTGGGAAAGCCCTGGGAATGTCCTGGTCTCCCATAAGGGAGGAGGCTCCATACCCCATGACTGTGGAGCAGAGCCCCTTTGTGCTCGGTTTGTCCACAGAGGACTCTGAGTTGCTTCTGGATGACACTGTCCAGCTGACTGAAGGACTGAAGACCAGAGAGAGACACCTGTTTCTTCTAACTGATGTGCTGGTCATTGCTAAGCTAAAgtCCTGTGCTAGTTACAGGCTAAAGCACAGAGTTGACCTGAAGGACCTCTGGGTGTGTGCATTAAAAAGTGAAGATGACGAAGTAGAAGATGAGGATGGAGAAATTGATGTTAAGACAACCATCCTTCTTGTctggtctgtctctctctgtctggtgTCTTTCAGTTCCCCTGAGGTTAAAGAACGCTGGTTGGATACTCTTCACAGGAAAGCCAGAGAGGCGAGACAGAAGGCAGGTTGCTGTTCTCCACCCCACAGTGTCCTGATGAAGGTCCTGAGCAGCACCATCACTaataaaactctAACTGGAGGTGGAATGGACTCTGTGATTGAGTTGTCTCTTCAAGGCAACGGAATCTCCGCCCTGCAGAAGGAGCTGTGCAAACAGGAGCCCCAACCTGAGCAGAGCATGGATCATGAAGGCAGCACCGGGTCTAAGAAGAGTATATTCCCCTTCAGACTGAAGCGAAGCTCCACGGTCAGCGGCCTGCCCACACGCTCAGAGAAGAGGAAGAGCCTGCTGTTCGGCCAACCGCTGTCCAGAGACGCCCCACTGCCCAAACCCATCACTGATGTCCTTGTGCTGTTGTGTAGGAAGGGTCCGAGCACTGAGGGTGTTTTCAGAACGACCTGTAACAGTAGGAACCTTAATGCAGTCCGTGAACAGCTGGACTCTGGGACTGAAGTGGACATGGAGGCCCTGCCTGTGACTCTACTGGTTGGGCTGTTGAAGACATTCCTGAAGGAGCTTCCAGGCAGCCTGCTGGTGGCTGACCACTATGACAAGTGGGTGGAGGCTCTAGAgaaggaggagatggaggagaagTGTCATGAGATGAGAAAAATGGTGGAAAAGCTCCCTGAAGCCAATGGCCTCCTTCTGCAGTATGTGCTGTGTCTGCTCCACCACATCGCCCAGCGATCAAAGAGCAACAAAATGGATACCAAGAACCTAGCAGTGTGTATCGCCCCAACCCTCCTACAGGACAGCAGCCAGATGATGGAAGTCAACAAGGTCGAAAAGGTGACCAACTTAACCCAGTTCCTGATCGAAAACTGCTGTAAAATCCTTGGAGAAAAGATTCTGAGTCTACTTAGGGACCCAGAAGAAGAGGAGCTGGGAGATAACTCAGactCCATGTCTTCACATCAACACGACTCAGCCTATGACAGCACGGACCCTGATGGAGACGGAGACAGCGCAGAGGCACTGGGGCCACAGGAGGATGAAAAGGGGGCTCTGGGAAACTGCCAGATCAGAATTGAATGTACACATGTTGCCTCCTGCTCCTCAGATGCCATATTCGAGACTTTCACCAAACCTTTCAACCGCCGCTGCTCCGAGCCCTCCATTTTATCCTCAGCAGCTATTAAGAATCTCCGGGGCCTGGCACGGAGCCAAGACGACTGTTCCTGCCCTAGGGAGGAGTACACGGACCAGCCACTGAAGAAGCAGGTATCAGACGACTCCTTCCTGCATCCACAGTGCTGTTACAGGTCACTGACGAGGAAGCTGGCTGGGAGCCTGAACATGGACGCTGCCGTTAGCGTTTCTGCGCCAATTTCCAAGGCTTGCTCTTGCTCTTCATCCTTCTCTCTAGAAAGCACTGCCTCGAACGTGTCTGAAACCTCCGTGTTCATGGTGGCCACCTCCCCTCTGCCTTCCCCAGCTAGTCCGAGAAAGAGCCAAACCACATCCAAGCCGAGAGCAGAGGCAGTTAAAGCAGATTTAGATGTAAGGCGCCATTCGTCTCCCTTCAAAAGAGCTAAGAGCTTGGGAAACTTCTCCACCACTAGGGGGAGCACTAAGAAAGTCGATTGCCAGAAAGACACAGCTTTTTCGTGCGAGACGCTTCAGGAGGACTCCCAGAATGAAACAGAGGCTCCGGATGAACCCATGAGGCGCCAGCGGCCGCTCTCTGCCATCGAGGTCTTCCAGCACGTGGACAGTAGAACTCCCAGCGGCCTGCCAACCTACGAGCAGGCCGTACTCTCTGGGGCCCTGCCTGCTCCCCCTCAGTACCGAAAAATGACAGTGTATGAAGCCATTGAGCAAGGCAGGAAGTCTCGTCCCATGTCCATGAACGATTACATCCTGGACTCCACCCCTGCTAGCCAATTTATGGACTCAATTGCACACTCAATAGACAATAATGTGGGTCAGCAGGGGTCGTTCAGGCAGAGAGCCATGTCTGAGTCAGTAGCCCGAACGAAGTTTGAAAAAGTGAGCCGTAGATGCAGCCAGCCTGTGTTTGAGGAGTTCTCTTACGCAAAGGAGTCTTatgtgtaaatagttaaattttTGCTTAAGCGTTATTGGAGCTGGATTACTTTTCCCAGAGAACTGTTCAAATCAAATGTCAGTGTAAATTTCCCAAATTTCCATAGTCTGTGTAATCCTACGAGGATCATTCATAAAACTGCACAcatcagattcatactggattaaaatattttcaaaattgCAGGGACATTTCCCCAAACAGAGTTTAAGCCTAGTCTTGTagtacacagcattttaaatttttCCATTTCACTGAAAAATAATATAGTCTACGATTAGGCTTAAACCCTTTATTGAAAACTGTGTATACTTAATGTCAGACTTAAACAAAGCAACAACCacttatatagtaaatatatagtatatatgtaaaatgtacagtatttatgtacagtacagtatcaCCCCACAGTATTTATTCTTGAGAGTAAACACACtatgcagattcatactggattaaataataaatggatACGCACTTGTAAACTAATCCAGCTCCAATAGGACTTTACATGTTATATACACATTATGAGATCTATCACGGCACGTCTGTTGTAGTGCAGGGTTCTTCTAATTTGTAACAGCTATTTAATAtgctaattttaaaataatagtttcAGAATATTGCCAGCGTGAAGCTATgtaaatagatgtattaaaactatttttttattcttagttTTTGTATCATTCTTTTCAAGCACTTATATGGCACttgtatattagaaatgtttcATGTTACATTCACTTTATTTCACTACAATAAACACTGTTGTCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255494.3 True 3477 mRNA 0.48 14 31665102 31691430
XM_007255495.3 False 3473 mRNA 0.48 14 31665103 31691430

Neighbor

gene id symbol gene type direction distance location
ppp2r5a ppp2r5a coding upstream 6889 31612513 ~ 31658213 (+)
dtl dtl coding upstream 56296 31598684 ~ 31608806 (+)
LOC103025325 NA coding upstream 230889 31427579 ~ 31434213 (+)
rhag rhag,LOC107549521,LOC107695981 coding upstream 246985 31398412 ~ 31418117 (+)
c3h12orf57 grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913 coding upstream 483988 31175441 ~ 31181114 (+)
rnf8 rnf8 coding downstream 15624 31707054 ~ 31713807 (+)
tcte1 NA coding downstream 31575 31723005 ~ 31728361 (+)
nfkbie NA coding downstream 58737 31750167 ~ 31759510 (+)
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding downstream 76114 31767544 ~ 31782219 (+)
rbm25 rbm25,LOC107568207,LOC107704053,LOC107669447 coding downstream 111994 31803424 ~ 31816114 (+)
G22845 NA non-coding upstream 117002 31547750 ~ 31548100 (+)
G22844 NA non-coding upstream 117585 31547192 ~ 31547517 (+)
G22837 NA non-coding upstream 157193 31507450 ~ 31507909 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding upstream 159751 31500015 ~ 31505351 (+)
G22822 slc30a1 non-coding upstream 184931 31395732 ~ 31480171 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding downstream 98242 31789672 ~ 31792894 (+)
G23022 NA non-coding downstream 665207 32356637 ~ 32357253 (+)
G23053 NA non-coding downstream 800825 32492255 ~ 32492741 (+)
G23057 NA non-coding downstream 830584 32522014 ~ 32527724 (+)
G23062 NA non-coding downstream 833632 32525062 ~ 32547464 (+)
G22834 NA other upstream 170204 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 1152276 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1401252 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2482971 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2497189 29152052 ~ 29167913 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1130914 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1145622 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1385194 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1392212 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 1896099 33587529 ~ 33595711 (+)

Expression


Co-expression Network