LOC103025325


Basic Information

Item Value
gene id LOC103025325
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31427579 ~ 31434213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255504.3
TGGAGTTCACAGGAGGAAACGCCGAGCGGAGAGATGGAGAggcggtgtgtgtgtttgtgtagctgAAGTCCGTTGGTATTTAGTAACTACATTTAGTAGCGCGGGTTTtattacagaactacagcaaTAATGGAGAGTTTCTAGAAGAGTCTGCGGGGGAAAGACGAACAGCGCTCACCTCCAGAGCGCGGCTTCTTCATCACCATGTCTGGAAACGTGGATTTGAAGGAGAGGAGTGAGTCCAGCACACGCACAAAAGAGAGAAGACGATCGAGGAGTAGAGgACGAGATGAGAAGAAGCGAAAACGTAGCAGAAGCAGATCATCATCTGcgagttcttcttcttcatcttcatcctcctcctcatcgTCTTCACGGTCCTCTTCTAGCAATGACTCAAGCAGCAGTAGGAGTAGCTCCAGTAGCAACGATTCTtaccaaaagaaaagaaaggccTCAAAGAAACGGAAAAAGGAGACACCTGGCAAAAAGaaacgcaaaaaagagaaagcacGTAAGCGAAAGAAGGAAAAGAAGCACAAAGTAGAGGAAGACGTCTCTGGTCCAGTTCAGATATCAAAGTATCTGAAGGAGAAGAAGCGAAGCGGAAAATATAGCATGATCTCAGGGAAGAAGATCAAAATGAAGGTGAAGAAATCAAAAAAGGACAAGCAGAGAGATAAAAATCGTGCTGAACTGTTGGAGTTTCTGAACTCTACATTTTGATGCAGATGACGCTTTGTGCTTCTCCCTCAGTCTTTCCTTTACCCAGGCCACGCCACTCTCAGGGAAAGGCCAGCTTCTGTAACGGACAGTACTGTGTGGCTACATACGGCTGTCGGagagttttattattatgttttattttattatctcttGTGTCTAAACTACAAGTAATGTAATCCCTACTTGCGGTTTAATTGTTACGTGTCTTTAAGCTGTTTAAAAATTAGACACATTGATCGTTTTATTTAGCTGTTAATGTTTATAAGTGAATGTCTTCTGACCTATTTGTAGATCATTAAGATAATAAGGTAATGAGCtccaaatgtgttttaatagaTTTTCTATCAGTTTGCATCCTCCTTTAAAGAAATAGCACCTCATGCTATTTGAGCAGGATACTtgtattttctttctgtcttcttCTTCCCCAAACCTCTGTTTTATTaagagttattatttttttactgccaAAAAAAACTACAGAGGCAGGACCTTTCCACACTGTTAGAACTGTGTGGTGAAATGTTGTTTCACATAATCATGAAAAACGTAGCTAAAAATTGAACATAGAAAATAGTTTGTATTTGTATGGGAACAGTGTATAGACGTTGCATCTGTCAAGGCAGTGTAGAAGTAAGGTCAGTTCTGTAATGAATCTCAATATTGTCTGACCACTGTCCTTGTCCTGTTGTGATAGAAGTGAAAATATACCTGATTCTTACAGTAAAACCTGTGGCGTTTTTcttgtaataaaaaacatttcacatttt

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255504.3 True 1496 mRNA 0.40 7 31427579 31434213

Neighbor

gene id symbol gene type direction distance location
rhag rhag,LOC107549521,LOC107695981 coding upstream 9462 31398412 ~ 31418117 (+)
c3h12orf57 grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913 coding upstream 246465 31175441 ~ 31181114 (+)
LOC103028275 ppp1cb,LOC107583611,LOC108426284,LOC107582864 coding upstream 264931 31150426 ~ 31162648 (+)
plb1 NA coding upstream 278402 31121395 ~ 31149177 (+)
LOC103029852 NA coding upstream 324239 31099571 ~ 31103340 (+)
dtl dtl coding downstream 164471 31598684 ~ 31608806 (+)
ppp2r5a ppp2r5a coding downstream 178300 31612513 ~ 31658213 (+)
LOC103022697 NA coding downstream 230889 31665102 ~ 31691430 (+)
rnf8 rnf8 coding downstream 272841 31707054 ~ 31713807 (+)
tcte1 NA coding downstream 288792 31723005 ~ 31728361 (+)
G22754 bpnt1,LOC107549527 non-coding upstream 255777 31164383 ~ 31171802 (+)
G22747 NA non-coding upstream 318630 31108655 ~ 31108949 (+)
G22743 NA non-coding upstream 329750 31090989 ~ 31097829 (+)
G22641 NA non-coding upstream 787505 30638826 ~ 30640074 (+)
G22638 NA non-coding upstream 812717 30614537 ~ 30614862 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding downstream 65802 31500015 ~ 31505351 (+)
G22837 NA non-coding downstream 73237 31507450 ~ 31507909 (+)
G22844 NA non-coding downstream 112979 31547192 ~ 31547517 (+)
G22845 NA non-coding downstream 113537 31547750 ~ 31548100 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding downstream 355459 31789672 ~ 31792894 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 914753 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1163729 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2245448 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2259666 29152052 ~ 29167913 (+)
G22276 NA other upstream 2438748 28988568 ~ 28988831 (+)
G22834 NA other downstream 60132 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1388131 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1402839 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1642411 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1649429 33083642 ~ 33169392 (+)

Expression


Co-expression Network