c3h12orf57 (grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913)


Basic Information

Item Value
gene id c3h12orf57
gene name grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31175441 ~ 31181114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255510.3
CTCAGCTCTCGCTCGCACCCGGTCAGTGTAAGTGGACGGACCGCTGTGTTACTGTGGGGTTAGGGGAGAGTCGGCGAATCAGTTCCACTTGTGTACGGTCTTTTCGAGCTCACTTGCATCACAGGCTTCAGTTGCATAAACTGCTGGAATGGCATCAGCTCCAGCCCAGCAGCCAACTCTGACCATCGAACAGGCCAGAGTTGTCCTGAGTGAGGTCATCCAGGCATTTTCTGTGCCTGAGAATGCTGCTCGAATGGAGGAGGCAAGAGAGAGCGCCTGTAATGACATGGGCAAGATGCTGCAGCTCGTACTACCTGTAGCTACACAAATCCAGCAGGAGGTCATCAAGGCCTACGGCTTCAACAATGAAGGAGAAGgtGTTTTAAAGTTTGCCAGACTCGTTAAAATGTATGAATCTCAAGACCCAGAGATTGCTGCAATGTCAGTCAAGCTCAAGTCTCTCCTCCTGCCACCTCTGTCAACTCCACCCATCGGTGGTGGGATCCCAGCTTCCTAGACAAACTGAATTTCACATCCACAACACAGAGCAGGATCAGTGTGCTGCTAAAACTGATCtacagttttattgttttgttactCATAAttgatctgtttttaaaaagcacagCACATTCCCACACCATTCCAGTTTTGTCCAgtcaatttaatttcatttgtctctcatactgtatttattcttttctttttgtaaatatttccttttttctacTTGATGTGTTTGACTGACCTACATCACACAGATTCTGTGTTGCAATGGGGATTAATCATATGAAGTGTTAAATCTCGATTTCTCAAAACCACCACAATATGTCAAAAGTGATGTGAGTTTACACTGCAGCTAGAGATTGACTCCAACTACTCTGAATGCTAAAACCATATCACATTGGATGTAGTTACCACAGCGTGTCACTCTGTGTCGCGTCAGTAAGCTccaatattaattaatgtagGCTTTCTTGGTGGGAACCCACAACATGTGGCACTGAGGCGATAACATGCGTTTAAAGTGTTTTGATTCTGTTTACTGCGGCGTGGCATTCTAGTAGGTGTAGTGTAAAAACAGTACGGAATCCAGTACTCTTGAAAAACaaactacatttattttttctttattcattgaCGAAGTAGATGGTTAAAATTGGAAACACCACGTTAATCAAATGTGCAGGTACATCTAATAGCTGATCAATTATAAAGTTCTTTGCGCAAAAAGACAACTTCAAAAAAGTAAATGTGCCTGAAGAGTTGTGCATATATCTTTAAATGCAGGACACACAAACAGATTTCTTCTTGTGACGCCTCTGTGTACCATACGGTATGAAATGGCAATCATCATGAAATGGTTCAGACTCACTTCTACTTCTGGTATGAAATGGAGTTAACATGCTTCAGGAATACTGATTAACCTAATCTCAGTCTGCTGTATCTGCAGTGTACTGTTGATTACCACAGTTGACAGAAAAGAAGTGAAGACTCACAGGCTCAGAACTAATTTATAGTAGAGACCAGTGGGCTGCTGCAGAAATAATCAAATTAGTTTAATTCTAGTTGAAACAAATGACTCAGGACTGTGCCAAGAGAGGTCAAAATTCAGAGCATATTATTTCAATTCAGACATAGCCAGTGTGCTTTCTGGTTCAGACAGTGACATCTCGTTCACTTTAGCAGAACATCTGCCAAAGTTTGTAGAGTTTATCCTCCCATGCAGCATAATTCTGCTGCCTAATGCTACAGCATGCTTAGTGTAGTTAACTCATAGACTTCACTTCATAGGTATTTATCATAACactaatatttatgtttttctgaaatatatacattttttgttccttttttcaatacatttttttacatttgacaTTGTGTTTTGTATATCATTTTCCAGTGTGCAATAAAGATTTGTTTCCCAGAA
>XM_022684267.1
CATTTCGCACTGTAAATTTTGTTGTACAGATAATTTTCTGAGCTGACGTGTAACTTACTTCTTACTTCACTtttccagtccaccttaaacagaGCAGCTGTTGCATTCTAGAGCCTGAGAGGCGTAATGCAACTAATGCCAACATTTAAGATGGACCGAACAATTTGAAGGCAGAATAAGGTAGCAATTAGAAGATAACTTCAGTGTAACTGCGTGTGTCTCTCCCGGATTGAGGATCAGACGTGCATCACAGGCTTCAGTTGCATAAACTGCTGGAATGGCATCAGCTCCAGCCCAGCAGCCAACTCTGACCATCGAACAGGCCAGAGTTGTCCTGAGTGAGGTCATCCAGGCATTTTCTGTGCCTGAGAATGCTGCTCGAATGGAGGAGGCAAGAGAGAGCGCCTGTAATGACATGGGCAAGATGCTGCAGCTCGTACTACCTGTAGCTACACAAATCCAGCAGGAGGTCATCAAGGCCTACGGCTTCAACAATGAAGGAGAAGgtGTTTTAAAGTTTGCCAGACTCGTTAAAATGTATGAATCTCAAGACCCAGAGATTGCTGCAATGTCAGTCAAGCTCAAGTCTCTCCTCCTGCCACCTCTGTCAACTCCACCCATCGGTGGTGGGATCCCAGCTTCCTAGACAAACTGAATTTCACATCCACAACACAGAGCAGGATCAGTGTGCTGCTAAAACTGATCtacagttttattgttttgttactCATAAttgatctgtttttaaaaagcacagCACATTCCCACACCATTCCAGTTTTGTCCAgtcaatttaatttcatttgtctctcatactgtatttattcttttctttttgtaaatatttccttttttctacTTGATGTGTTTGACTGACCTACATCACACAGATTCTGTGTTGCAATGGGGATTAATCATATGAAGTGTTAAATCTCGATTTCTCAAAACCACCACAATATGTCAAAAGTGATGTGAGTTTACACTGCAGCTAGAGATTGACTCCAACTACTCTGAATGCTAAAACCATATCACATTGGATGTAGTTACCACAGCGTGTCACTCTGTGTCGCGTCAGTAAGCTccaatattaattaatgtagGCTTTCTTGGTGGGAACCCACAACATGTGGCACTGAGGCGATAACATGCGTTTAAAGTGTTTTGATTCTGTTTACTGCGGCGTGGCATTCTAGTAGGTGTAGTGTAAAAACAGTACGGAATCCAGTACTCTTGAAAAACaaactacatttattttttctttattcattgaCGAAGTAGATGGTTAAAATTGGAAACACCACGTTAATCAAATGTGCAGGTACATCTAATAGCTGATCAATTATAAAGTTCTTTGCGCAAAAAGACAACTTCAAAAAAGTAAATGTGCCTGAAGAGTTGTGCATATATCTTTAAATGCAGGACACACAAACAGATTTCTTCTTGTGACGCCTCTGTGTACCATACGGTATGAAATGGCAATCATCATGAAATGGTTCAGACTCACTTCTACTTCTGGTATGAAATGGAGTTAACATGCTTCAGGAATACTGATTAACCTAATCTCAGTCTGCTGTATCTGCAGTGTACTGTTGATTACCACAGTTGACAGAAAAGAAGTGAAGACTCACAGGCTCAGAACTAATTTATAGTAGAGACCAGTGGGCTGCTGCAGAAATAATCAAATTAGTTTAATTCTAGTTGAAACAAATGACTCAGGACTGTGCCAAGAGAGGTCAAAATTCAGAGCATATTATTTCAATTCAGACATAGCCAGTGTGCTTTCTGGTTCAGACAGTGACATCTCGTTCACTTTAGCAGAACATCTGCCAAAGTTTGTAGAGTTTATCCTCCCATGCAGCATAATTCTGCTGCCTAATGCTACAGCATGCTTAGTGTAGTTAACTCATAGACTTCACTTCATAGGTATTTATCATAACactaatatttatgtttttctgaaatatatacattttttgttccttttttcaatacatttttttacatttgacaTTGTGTTTTGTATATCATTTTCCAGTGTGCAATAAAGATTTGTTTCCCAGAA

Function

symbol description
grcc10 Predicted to be involved in post-embryonic development. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Temtamy syndrome. Orthologous to human C12orf57 (chromosome 12 open reading frame 57).

NR:

description
protein C10

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255510.3 False 1933 mRNA 0.40 4 31175978 31181114
XM_022684267.1 True 2062 mRNA 0.40 4 31175441 31181114

Neighbor

gene id symbol gene type direction distance location
LOC103028275 ppp1cb,LOC107583611,LOC108426284,LOC107582864 coding upstream 12793 31150426 ~ 31162648 (+)
plb1 NA coding upstream 26264 31121395 ~ 31149177 (+)
LOC103029852 NA coding upstream 72101 31099571 ~ 31103340 (+)
LOC103029526 NA coding upstream 85983 31083505 ~ 31089458 (+)
LOC103029213 NA coding upstream 99384 31072147 ~ 31076057 (+)
rhag rhag,LOC107549521,LOC107695981 coding downstream 217298 31398412 ~ 31418117 (+)
LOC103025325 NA coding downstream 246465 31427579 ~ 31434213 (+)
dtl dtl coding downstream 417570 31598684 ~ 31608806 (+)
ppp2r5a ppp2r5a coding downstream 431399 31612513 ~ 31658213 (+)
LOC103022697 NA coding downstream 483988 31665102 ~ 31691430 (+)
G22754 bpnt1,LOC107549527 non-coding upstream 3639 31164383 ~ 31171802 (+)
G22747 NA non-coding upstream 66492 31108655 ~ 31108949 (+)
G22743 NA non-coding upstream 77612 31090989 ~ 31097829 (+)
G22641 NA non-coding upstream 535367 30638826 ~ 30640074 (+)
G22638 NA non-coding upstream 560579 30614537 ~ 30614862 (+)
G22822 slc30a1 non-coding downstream 214618 31395732 ~ 31480171 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding downstream 318901 31500015 ~ 31505351 (+)
G22837 NA non-coding downstream 326336 31507450 ~ 31507909 (+)
G22844 NA non-coding downstream 366078 31547192 ~ 31547517 (+)
G22845 NA non-coding downstream 366636 31547750 ~ 31548100 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 662615 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 911591 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 1993310 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2007528 29152052 ~ 29167913 (+)
G22276 NA other upstream 2186610 28988568 ~ 28988831 (+)
G22834 NA other downstream 313231 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1641230 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1655938 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1895510 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1902528 33083642 ~ 33169392 (+)

Expression


Co-expression Network