LOC103028275 (ppp1cb,LOC107583611,LOC108426284,LOC107582864)


Basic Information

Item Value
gene id LOC103028275
gene name ppp1cb,LOC107583611,LOC108426284,LOC107582864
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31150426 ~ 31162648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255514.3
CTTCAGCGCCccctgtgtgctgtgtgtggaaGCGCCGCTGGGGCTGTCAGCGAAATGGCGGAAGGGGAGCTGAATGTTGACAGTCTGATCTCCAGGTTGCTGGAAGTGCGAGGATGCAGGCCGGGGAAGATTGTGCAGATGACGGAGGCGGAGGTGCGGGGGCTGTGTATAAAGTCCCGCGAGATTTTCCTCAGCCAGCCCATCCTGCTAGAGCTTGAGGCTCCACTCAAAATCTGCGGAGATATCCACGGTCAATACACTGACCTGCTGCGGCTGTTTGAGTACGGGGGCTTTCCTCCAGAGGCTAATTACCTGTTTCTAGGGGATTATGTGGACAGAGGGAAACAGTCTCTGGAGACTATCTGCCTGCTTCTGGCCTACAAGATCAAATACCCTGAAAACTTCTTCTTGCTCCGTGGCAACCATGAGTGTGCCTCCATCAACCGCATCTACGGTTTCTACGATGAGTGTAAACGCAGGTTTAACATCAAGTTATGGAAAACTTTTACTGACTGCTTCAATTGTCTGCCTATTGCTGCCATTATTGATGAGAAGATTTTCTGCTGTCATGGAGGTCTTTCTCCTGATCTTCAGTCTATGGAACAGATCCGCCGCATCATGAGGCCCACTGACGTCCCTGACACAGGGCTGCTGTGTGACCTCCTGTGGTCAGATCCGGATAAAGACGTGCAGGGCTGGGGTGAGAATGACCGAGGTGTGTCCTTCACCTTTGGGGCTGATGTGGTCAGCAAGTTCCTTAACCGACATGATTTAGACCTTATCTGCAGAGCACATCAGGTGGTTGAAGATGGTTATGAGTTTTTTGCCAAGCGGCAGCTGGTCACACTGTTCTCTGCCCCAAACTACTGCGGGGAGTTTGATAATGCTGGAGGAATGATGAGCGTGGACGAGTCTCTTATGTGCTCTTTCCAgATCCTGAAGCCCTCAGAGAAGAAGGCTAAGTATCAGTATGGTGGAGTGAATTCAGGCCGTCCTGTCACTCCTCCCCGCACTGCTCAGGCCCCGAAGAAGAGGTGAGCTGACTGGCCCTCTGGAGCCCAGTATTAAACCCCTCCTCCCCATGTGTCGCCTAGGGCAGGCCCTTTACCCACTCAACCACCACTTTACATGTATATACTTtcgttatttgtttattttgctgtgactaatgttttttctttgcttgtTTGTTGGTATTTCTATACATGATTGATATTAAGTAAAAACTGGTTATACAGTACCGTGACATTTGTTGCTCAGTCAGTCTGGCCTACATTACAGGCTGCTGCAGCACGGATAAACAGATGAAAagcttgtgagtgtgtgtgggtgataAGCAAGATAAGTGGCTAAGACAATGTCCAGCCACCACATGAAAGGAAGGTGGTGTTTTTGTTTGAGGATAGGAATgaattttgcttttctttttgtcAGAACAGTGCCCCATAAGCTCAAGGTCTGCTTGACCTAAGAAATAAGCTTCATTTATTCTTTTGGACGTACGAATGTAAATTTCAAAGAGTCAAGAAAATAAAGTTCATTGGTGCAAACGCTATACAGTTACATGAACGTGAGCACATAACCATATGTATTTGTCTATATACAACAGTTATCATCAACtgagggggggaaaaaaagaaagaaatgaccTCAGAAAGAGAGGTATTGTAGTTGCACATTTGTAATTATGACATTTTACTATTATGGTAGTGCTACCATTATCACCAGCTTAtgttaaaacactttaatgTCCAAGGATTGGGAGTAATGGGATTATTTCCTTTTTCCGTATGCCTGTGTGAATGTTCATTATAGGTAGTGTTTGAAAAGGCAGAGGAACATCTGGAATAAGTTCTTTCTCAATTGCACTTTTACACCAGACTCCGCACACAAATACTTTTTGTAGCTACTGTTGTAAAGAAtactttaaacactttttttttgctcactaAAAATCCCTTTCACCGAAATGTGAGACTAAACCAGCCCAGATCGAAATAGTTCATTCATTGACTTTTGAAGATAACAGTAGAGATATTAATGTGGAGCCCAATCCTGGCTCTGGAAATCCATCGCCACCTGCTGAGTTAGGCTCCAAACCAAATCTAACACAGccagtctggatttaaaaaaGACGTTTATAAGCATCTTGGACCAAGATCAAGCACAACTTTTCCCATCAGCCATCTAGTTTAGACAGGAAATATGTAGCAGCAAATCTATCGATTAATATTAGGTTggtttaggattttttttttttcttttttttttttcctaccaGCATTCCATAAAGTGTGTTAAACTTTGGAACAGTAGCtatgaacagaaaaaatgtgGACAGGGCATTAACAGATTAATACCCAGTCTAAAGCTTTAGTCTAATACTGACTCGCATAAACATGGCTTTGAGTGAAAGCTCACATAATCTGACTGAATATTCACAGCatgattatttataatatacacAAGTCATACTAACTAGACTCTTTGATGCGGGGTTGAGTAGCATGCTGGATGTTGGTAAGCACATGTATCACACTACAAACgttacagtagagtacagtacagtacattatcTCCTTAGTAACACCTTGCACTTTTGCCATCTGTTTACCAGGTGCTTTGAACAAATACACTGTCAGCATTTCAGGCCAGACAAGGCACAGACTAGTGCATTGTGTTACAGGGTGACTCTGTAAAAGACAGGAATTCTGCTTAAAGGCTAGAAATCATAGATCATTCAGGGCATTTAGCTGTACTTAGTACTCACTCGTTCTGAATGCATTTTGCACTTCCCAATTTTTATAATAAGCAGACAAACTGAGAAGTGCACTAACGTATGAGCTTTCACCCTCAGCCGCTTTGTCTCCTTCTCTGAGTTTGATGGCACAGGTGAAAGCAACAGAAGCAGCCTTGTGTTAAACCGTGATTATTGCCTTACACTGTTCAATACTGCCATCTCAAATTctgaccttttttcttttttagtattTCTTGTTAACATGGATGGATGTGCATATTTGGAGTTTGCAGCTCTACACATAgtgtgctgtagtgtagtggtcTGGTCAGGCCAAGAACTAAATTTTgagttctgtgattaaaaacattcACTGATTGGATTAGATTTGATTTtgcagtgcagtacagtatGCCTTTACTTTAAGCTGTTATCAAAAGTCAGGAAATGTTTCAAGTGTTTTAAATTCCCTTTTGAGATTTGTACCAGATTGTTTCAAACTCTTTGAATGGAATAAATGGAATAGTGATGTTGA

Function

symbol description
ppp1cb Enables protein heterodimerization activity. Acts upstream of or within convergent extension involved in axis elongation and liver development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in Noonan syndrome-like disorder with loose anagen hair 2. Orthologous to human PPP1CB (protein phosphatase 1 catalytic subunit beta).

NR:

description
serine/threonine-protein phosphatase PP1-beta catalytic subunit

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255514.3 True 3275 mRNA 0.42 8 31150426 31162648

Neighbor

gene id symbol gene type direction distance location
plb1 NA coding upstream 1249 31121395 ~ 31149177 (+)
LOC103029852 NA coding upstream 47086 31099571 ~ 31103340 (+)
LOC103029526 NA coding upstream 60968 31083505 ~ 31089458 (+)
LOC103029213 NA coding upstream 74369 31072147 ~ 31076057 (+)
LOC103026930 LOC103026930,LOC108411508,LOC105017614,LOC107714796,LOC107670243,LOC107565462,LOC107550532,LOC107676708 coding upstream 670086 30450102 ~ 30480340 (+)
c3h12orf57 grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913 coding downstream 12793 31175441 ~ 31181114 (+)
rhag rhag,LOC107549521,LOC107695981 coding downstream 235764 31398412 ~ 31418117 (+)
LOC103025325 NA coding downstream 264931 31427579 ~ 31434213 (+)
dtl dtl coding downstream 436036 31598684 ~ 31608806 (+)
ppp2r5a ppp2r5a coding downstream 449865 31612513 ~ 31658213 (+)
G22747 NA non-coding upstream 41477 31108655 ~ 31108949 (+)
G22743 NA non-coding upstream 52597 31090989 ~ 31097829 (+)
G22641 NA non-coding upstream 510352 30638826 ~ 30640074 (+)
G22638 NA non-coding upstream 535564 30614537 ~ 30614862 (+)
G22636 NA non-coding upstream 563624 30586465 ~ 30586802 (+)
G22754 bpnt1,LOC107549527 non-coding downstream 1735 31164383 ~ 31171802 (+)
G22822 slc30a1 non-coding downstream 233084 31395732 ~ 31480171 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding downstream 337367 31500015 ~ 31505351 (+)
G22837 NA non-coding downstream 344802 31507450 ~ 31507909 (+)
G22844 NA non-coding downstream 384544 31547192 ~ 31547517 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 637600 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 886576 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 1968295 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 1982513 29152052 ~ 29167913 (+)
G22276 NA other upstream 2161595 28988568 ~ 28988831 (+)
G22834 NA other downstream 331697 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1659696 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1674404 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1913976 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1920994 33083642 ~ 33169392 (+)

Expression


Co-expression Network