LOC103032288 (LOC108424430)


Basic Information

Item Value
gene id LOC103032288
gene name LOC108424430
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54655404 ~ 54659026 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255526.3
CATCTACACAATGCGGACACTTCACATTCTCATTTACACCCTGCTCTTCCCTCTCCTCTCGCTCTGCAGCCAAGTGTGTCCAGAGAAATGCGTCTGTGAACAAACCggatcagtgcagtgtttcaggGTACAGGCCATGCCCTCAGGCATCCCGAGAGATGTGAGGAAACTTAACCTGGGAAACAACCACATTAAGGAGATCAAGAATCGAGATTTGTCGGGTTTGCAAAGTCTTGAAGAGATCATCCTGTCTTCCTGTGGAGTGGAGCAGCTAGAGGGTAATGTTTTTAGGGCCCagaggcttttaaaaactctGGATCTCCAAAAGAACAAACTGAGGAACATTCCTCGTGGCCTGCCCTCCAGCCTGGAGAGCCTTCACCTGGGTCACAACAGGATCCAGACATTGCAGGAGTCCACCTTGCAGGGTCTAAAGAAGCTCCGCCTCCTGAACCTCCAGAATAACCTCATCACTACTTTACGCTCCAGTACTTTCTCAGCTCTCACTGTGCTGGAGGAACTATATCTGGAGGGTAATAAACTCGAGGCCGTGCAAGGTGCCCTCAGGTTGCCAATGCTGACTCAGTTAAGCTTAGCAAACAACAAAATCCCTTCACTGCCTTCAGCTTTCTTCTCATCACTGCAGCTTCTTAAAACATTAGACCTGTCCTCTAACCTTTTGACTAAGGTGCCTCATGACCTTCCTCAAGCTCTGCTTAACCTCAGCTTGGACAGGAACcaattaagaagtttaaaaagtCGTGATTTGGCTCAGTTGCGTGATCTGGTTACGCTGACTGCCTGCTACAACAGGCTGGTGTCGGTGGATGGAGGCCTTCGCCTGCCCAGTCTGAGTGTGCTGGAGCTGGTAGGAAACCAGCTGCGTGTGCTGCCCGGGCGGCTATCAGCCAAACTGGAGAAGCTTGATTGTGGGCAGAATCACATCCAGGAAGTGAGCCATCAGCAGCTATCTGGACTGAAGCAACTGCGGCATCTTTTTCTGGAGAACAACACCATCCGACACTTTGAGAGCAATGCTCTGAGGCACTGTGCTCACCTGACTAACCTGGCTTTAGAGAAGAACCTGCTCTCCACGTTTCCAAACAGGCTTCCTGAAACCCTGGTTCGCTTGGATTTGAAGGGGAACAATATAGCCATGATTAAGGAGCATGAACTAAAGTCTCTGAAGCGGCTCCAGGTGTTGAATCTGCGCAACAACAGGCTCTCATCGCTGCCTGCTATGAACCTGCTGCCCAAACTGAGGACGCTGTATGTTGACGGAAACCCCTGGAACTGCAGCTGTGACCTGTTCAAGGTCAAGAGGTCTCTGCAGGCGAGAGACGTCGATATAAGCTCTGATTTCTGCACTGAGGCTGTTCAGACATCAGTGGACATTTGGCAGGCGTATGTACTGACACAGGAGAAGTGTGAGGAGACTGAAGAGTCATTACCAGAGAGCCAGACTGAACCCACAGACAATGAGGACTACTATGATTACGATCTTTTGTAAAGTTAATAATTTGCCATCTGTTTTTGATTTTCCATAGATTATGCTTTTTGTGTTgatttaaacataataaatgcATCATCCATTCCTACACA

Function

NR:

description
PREDICTED: nephrocan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255526.3 True 1602 mRNA 0.49 3 54655404 54659026

Neighbor

gene id symbol gene type direction distance location
nus1 nus1,LOC107736830 coding downstream 2940 54642015 ~ 54652464 (-)
tab2 tab2 coding downstream 131099 54468017 ~ 54524305 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding downstream 465083 54163102 ~ 54190321 (-)
med23 med23 coding downstream 939496 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 1245335 53333965 ~ 53410069 (-)
dcbld1 NA coding upstream 36157 54695183 ~ 54732688 (-)
vgll2 vgll2 coding upstream 113249 54772275 ~ 54781380 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding upstream 156752 54815778 ~ 54826525 (-)
trnal-cag_7 NA coding upstream 185036 54844062 ~ 54844144 (-)
LOC103025507 NA coding upstream 585090 55244116 ~ 55258518 (-)
G28221 NA non-coding downstream 121572 54529768 ~ 54533832 (-)
G28156 NA non-coding downstream 192444 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 251587 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 290371 54335849 ~ 54365033 (-)
LOC103031114 NA non-coding downstream 389776 54258911 ~ 54265628 (-)
G28231 gopc non-coding upstream 4693 54663719 ~ 54665970 (-)
G28262 igf2r non-coding upstream 191526 54850552 ~ 54856843 (-)
G28263 igf2r non-coding upstream 198684 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 208421 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 414975 55074001 ~ 55079665 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 31564 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 599707 54049795 ~ 54055697 (-)
akap7 NA other downstream 747992 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1033046 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1805498 52786472 ~ 52849906 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 607065 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 773055 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 840874 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 943844 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 975506 55634532 ~ 55641375 (-)

Expression


Co-expression Network