LOC103033231 (LOC103033231,LOC108424426,LOC108257936)


Basic Information

Item Value
gene id LOC103033231
gene name LOC103033231,LOC108424426,LOC108257936
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47129070 ~ 47134301 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255529.3
acatggttaaacaaTGTCTATagactttaaactttaaaatcttaATATCATGCATTGTGTCTTATTCATAAGCCTTCGTCCTTGCAAAATGAGTACAGTATATTGTGTTCTTTTAAAGGCCAGTTACAAGCATAACATGTAGGAGCTTAGACACAAGACAGAATAAGGGCATTATCTCTGTGATAATGGGAGCGTGgtggtgttttgttttagatGGGGCCTCAgaggtaaaaagaaaaagggtCAGACAAGATTTGCCTAGTCTTTAGTTCTGTCCCATCTTCACTGAGCTCCCGGATCTGTCTGTTTACTCCTTTATTTGGTAACCAAATAAAGTGCAAAATGGGAGAGTGGGACGTCCTTGGGCGGTTGTTGGACAAGGTGCAGAAACACTCTACGGTGATTGGGAAAATCTGGCTGACTGTGCTGTTTGTCTTCAGGATCCTAGTCCTCGGAGCCGGTGCTGAGAAAGTGTGGGGAGATGAACAATCTGACTTCATCTGCAACACCCAGCAGCCAGGCTGTGAGAATGTTTGCTACGACCACGCCTTCCCCATTTCCCACTTACGCTTCTGGGTGCTGCAGATCATCTCAGTGTCCACTCCAACACTAGTCTACTTGGGCCACGTTCTGCATGTCCTTCACGAGGAGAAGGAAATGAGAGAAGCCATAAAGAAAGCCCAGAATGAACAAATCAGCATGTTTCTCAAGAAAGGCTGCAAATTTCCCAAATACAGCAATGAAAAGGGCAAAGTCAACATCCAAGGCCGGCTCCTGAGAAGTTATATCCTGAATTTGCTGGTAAAGATACTGCTTGAGGTTGGATTTATACTGGGCCAGTATTATTTGTTTGGCTTCACCCTTCACGCCCAATACGTCTGCAGTCGTTTCCCCTGTCCGCACAAGGTGGACTGCTTCCTGTCAAGGCCGACTGAGAAAAATGTCTTCATTTGGTTCATGCTGGTCGTGGCCTGTGTGTCGCTGCTGTTGAACCTCGTTGAGTTTTTTTACCTGTGCGTCAGGAAGGTCAACGAGTGCCTTAATCGAAAAAGGGACTATATTGTGACCCCTGTGACCCCTGCTGTGACCAAGAAGAACTTTGACAAAAAAGGTCAAGTAATCCAGAACTGGATGAAACATGACATACACCTCCATACAAAAGAGCCTGGCAGTGACTTGGCTAAGAACAGGGTTTTAGAAGACCTCAACACCAATGATGTGTTGGAGGAGGTGCATATCTGAGCAGCAAGTCTCTGTAAACACAGCCACTCACAAGGCCGAATTGTGCAAATAACCGTGGAGTTGCATGGAGTTAGTCTGACCTAAACCATGACTGAGTAACTCTGGCACATGCTAGTTTtgtgtttgatttaaaataatttttaaatagatattgcCACATTTTTGTTCTGTCATTTATTTCTGTTACTTAAAAATCTGTGGATCCATGCTGATTCGTTCTTGGTTGAATTCTTAATAAAAGTGCTTAAAaa

Function

NR:

description
gap junction Cx32.7 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255529.3 True 1493 mRNA 0.44 2 47129070 47134301

Neighbor

gene id symbol gene type direction distance location
LOC103043748 LOC108424468 coding downstream 288 47126477 ~ 47128782 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding downstream 4600 47122168 ~ 47124470 (-)
LOC103044065 LOC108424424 coding downstream 27439 47096096 ~ 47101631 (-)
LOC103045279 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding downstream 34166 47089549 ~ 47094904 (-)
LOC103022574 mdga2,LOC108411484,LOC108257548,LOC107704381 coding downstream 192477 46645637 ~ 46936593 (-)
hsdl1 NA coding upstream 434 47134735 ~ 47139318 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding upstream 1191584 48325885 ~ 48446366 (-)
cdk19 cdk19 coding upstream 1311076 48445377 ~ 48539382 (-)
ppil4 ppil4 coding upstream 1428203 48562504 ~ 48576593 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding upstream 1588699 48723000 ~ 48735370 (-)
G26783 LOC108424466 non-coding downstream 9064 47117582 ~ 47120006 (-)
G26771 NA non-coding downstream 22746 47105315 ~ 47106324 (-)
G26751 NA non-coding downstream 465107 46662119 ~ 46663963 (-)
LOC111197648 NA non-coding downstream 529639 46578287 ~ 46599431 (-)
G26666 NA non-coding downstream 720006 46395961 ~ 46409064 (-)
G26810 NA non-coding upstream 64563 47198864 ~ 47199418 (-)
G26826 NA non-coding upstream 204120 47338421 ~ 47347966 (-)
G26828 NA non-coding upstream 216312 47350613 ~ 47350891 (-)
LOC111188267 NA non-coding upstream 246541 47380842 ~ 47384068 (-)
G26846 man1a1,LOC107727625 non-coding upstream 301144 47435445 ~ 47569287 (-)
G26754 NA other downstream 390334 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 593235 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 603074 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 693145 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 836264 46292087 ~ 46292806 (-)
LOC103039734 LOC108424428 other upstream 1083205 48217506 ~ 48324662 (-)
pln NA other upstream 1143961 48278262 ~ 48288736 (-)
G27145 NA other upstream 1752693 48886994 ~ 48891028 (-)
G27258 NA other upstream 2504458 49638759 ~ 49639444 (-)
G27400 NA other upstream 3347588 50481889 ~ 50531639 (-)

Expression


Co-expression Network