pax1 (pax1,LOC103035152,LOC107564482,LOC107548404)


Basic Information

Item Value
gene id pax1
gene name pax1,LOC103035152,LOC107564482,LOC107548404
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33676075 ~ 33681836 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255535.3
TCTGTGGACAGATCAGTGCAGTCCTTCTGCGTCCTGAATCGAATTTCAGTAAGGCCTTTGGAGGAAGAAGAGGGAGGCCCTAACCGGGAAACGGCTTTTCCAATGTACAGGAAGAACAGTTGGGCTCACCGGGGCTTTTACAAGAGCAACAAATAAAGCCTGCAAATGGAGCAGCCTTACGGTGAGGTAAACCAGCTTGGCGGCGTGTTCGTCAACGGGCGCCCGCTGCCCAACGCAGTGCGAATCCGCATCGTGGAGTTAGCGCAGTTGGGCATCCGACCGTGCGACATCAGCCGCCAGCTGCGCGTCTCTCATGGATGCGTGAGCAAGATTTTGGCCCGCTACAACGAGACGGGCTCCATTTTGCCCGGTGCTATTGGGGGCAGCAAGCCACGAGTCACCACCCCCAACGTGGTCAAGAGCATACGGGACTACAAGCAGTCAGATCCAGGGATTTTCGCCTGGGAAATAAGGGACAGACTCTTGGCCGACGCAGTTTGTGACAAATACAACGTCCCGTCAGTCAGCTCCATCAGCAGGATCTTGAGGAATAAGATTGGAAACCTGTCTCAGCAGGGACAGTACGAGAGCGGTAAACCTTCTCCCCCACAACTGTCCTACAGCCCCGTGTACCCGTACTCCTACCCCAACGCCGGATCGCCCAGCAGCGCCAAGCTGGGCAGCCCTCCCGGTATGGCTGTGACGGCGGGTCACATGGGACTGTCCAGGGCCTGGCCTTCCGTGCATACAGTCAGCAATATTTTAGGAATACGAGCCTTCATGGAGCCATCAGcGATCGCCGGTCCTGAGGGCTATCAACCGAAAATGGAGGAGTGGGCGAGTGTCAACAGAACACCATTTCCCTCCAGTCATGGTCTCAATGGCATTGAAAAATCAACCCTAGAAACGGATATTAAATACAACCAGTCTTCAGCTAATCTTGCCGGATATGTTCCCGCGTGTGCCTACTCAGCCAGCCAATACGGTGTCAGCGCATGTAGTGGAGCTTCCGGTACCTATGCCCCTCATTGGCAGTCTCAAGCCTCAGGGGGTCTGAGCCACGCGGGCGGCGGGGCAATGGGCCAGCACGGCCACAGCCTCCACAGCGCAATGGCCTTTAAACGACCAACGCACGTTGGGGAAAGGAAGCTCTCTAGTCTGAGTCCAGTGGGCAAGCAACAGCACGAGGTTTTGAGCGGACCCCCAGGTCTACCCGGAGCTCCCTCCTCCTCCTAACCCCTCCACAGTCAATTGCACTCACATATTCGGGAGGGGAAGCTTAAGGGCGGCAGCAGTAAGTTATTACGGTCATATCAGCGGTCTGAAATAGGCACGCGCAGACAATTAAGagaaattaatttaactttGAAAGCTGGAACTGTGGGAGTTTATGACCACAGGTGATTTCTGCAATATTTGCAGTCCATTAGTTTTTTGTAACGTTTCCTGTCTTTTTCCGTCGCTTTTTTCTTTCAGTTGTTTGTAAAAcatgtttcttttaaataattcataagaCCGCAACAACAATTGTTACTGTGAAAAGTAAACAAAATGCAACCTTGGACTTGATTACATCTTgattacataaattaaaacttaatttgctttaaaaatgtaagccTGGTAAACTACAGGCATTTCTGGAACGTATTAATAAAGGAGGAACGTTGCAAAAAacgttatatttttataaatccaACTGTGTCTAATAAACGCATGTTTTAAGAAACCTA

Function

symbol description
pax1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; positive regulation of transcription by RNA polymerase II; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in branchiootorenal syndrome.

NR:

description
paired box protein Pax-1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K09382 PAX1_9; paired box protein 1/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255535.3 True 1733 mRNA 0.50 5 33676075 33681836

Neighbor

gene id symbol gene type direction distance location
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding upstream 26418 33625486 ~ 33649657 (+)
insm1 NA coding upstream 164458 33508074 ~ 33511617 (+)
cfap61 NA coding upstream 177754 33444402 ~ 33498321 (+)
naa20 naa20 coding upstream 239271 33431923 ~ 33436804 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding upstream 599935 33070811 ~ 33076140 (+)
ndufaf7 ndufaf7 coding downstream 107746 33789582 ~ 33798774 (+)
LOC103030910 LOC108444009 coding downstream 301358 33983194 ~ 34046385 (+)
LOC103030598 cldn20,LOC103030598,LOC107679670,LOC105017817 coding downstream 369417 34051253 ~ 34069327 (+)
LOC103034505 LOC108444017 coding downstream 414653 34096489 ~ 34193035 (+)
LOC103029743 zdhhc14,LOC108444016,LOC107747944,LOC107679689,LOC107742328,LOC107560202,LOC108258056 coding downstream 524507 34206343 ~ 34245118 (+)
G23367 nkx2-4 non-coding upstream 21086 33650637 ~ 33654989 (+)
G23356 NA non-coding upstream 96553 33579267 ~ 33579522 (+)
G23349 NA non-coding upstream 107133 33568394 ~ 33568942 (+)
LOC111195982 NA non-coding upstream 173724 33501237 ~ 33502351 (+)
G23289 NA non-coding upstream 315476 33360380 ~ 33360599 (+)
G23427 NA non-coding downstream 203626 33885462 ~ 33887869 (+)
G23462 NA non-coding downstream 364754 34046590 ~ 34047774 (+)
G23499 NA non-coding downstream 566001 34247837 ~ 34286895 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding downstream 981228 34663064 ~ 34667031 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding downstream 994182 34676018 ~ 34679797 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 80364 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 506683 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 594213 33076624 ~ 33081862 (+)
LOC103042732 NA other upstream 834729 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 849136 32822344 ~ 32826939 (+)
cebpzos cebpzos other downstream 96106 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 212500 33894336 ~ 33964508 (+)
trdn NA other downstream 1544962 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 2361595 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 2567988 36249824 ~ 36458929 (+)

Expression


Co-expression Network