brox (brox,LOC107732498,LOC107710643,LOC107568230)


Basic Information

Item Value
gene id brox
gene name brox,LOC107732498,LOC107710643,LOC107568230
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70856750 ~ 70867662 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255625.3
CGCCATCAGCGGTGATGTGTGAGAAACAGGAAGAGAATCGTGTTTATTTGGTGTTTGGGGAGAGTCTGTGTGGATTAaacacttcttcttcttcttcctccgcGGTTAAACCCTTATTCCCCGCAGGTGTTGGTGTGTCTCCAGCCGCGCGATGACCCACTGGTTCCATCGAAACCCTCTGAAGGCCACAGCGCCCGTGTCCTTCAACCTGTACGGAGTTGCGTCCAGCCCTGCCGCCAGTAAAATCTGCAATGACCTGAGAACTAGCCGGGCCAGACTTTTGGACATGTTCACAGATGCTACCTGCACTCCAGAGATCATGAAGAAGGCCACCGATGAATATCTTTCCCTTTTACAGGGGTTCATTGTATCTCTGGATGGAACCGGGCAAGAGAACAAGCTGCGGTTCATTCAGAACTTCAGGTGGACTGACACTCTGCAAGGAAACACACCTAGttCTCAACAAGATGCTGTTTTTGAACTGGTGTCCATGGGGTTTAACATTGCCATTTGGCACACTAAATTTGCTTCAAGGCTTGCCGGAAAAGAAAAcatCACTGAGGATGAGGCAAAAGATGTGCATAAGAGCCTTAAAACTGCTGCAGGAATGTTCAAGTATCTCAAGGAGGTTCAAATACCGCGACTCATCACACCAGCTGAGAAAGGGCGAGACCTGGAGCCCAGGGTCATTGACACCTACATTGTGCAGAGTCAAGCTGAGGCTCAGGAAGTGACCATTGCCCGTGCAATTGAGCTGAAGCATAATGTGGGCCTTATTGCAGCTTTAGCATTTGAGACAGCAAACTTCTACCAAAAAGCTGATCATACTCTGAACACTCTGGATCCAGAATACAGCATGAAGTGGAGAAAATACTTGCAGCTGAAACAACATTTCTACATGGCTTATGCACACTGCTACCATGGACAGACTCTTTTGGCCAGTGACAAGTGTGGAGATGCCATACGATCCCTACAGGAGGCAGAAACATATTACTCCCGTGCAGAGGTGCTGTGTAAAGAATACCGTCAGACCAAGGGCCCAGGTAGCACTGCTAAACCCTCTGAACAACTGTTCTTCAGGAAACTTGGTGGTCTGATCAAAAACACTTTGGAAAAATGTCAGAGAGAAAATGGGTTCATATACTTCCATAAAGTGCCTGCAGAAGCACCCGTTTTGGAGCTAAAGGCAAGTTATGGTCTTGCAGAACCCATTTCCTTTGAGCTACCTGCTCTCAGTGACCAGTGCACTTTGGAGGTCTACGCCACATTTGATCTCACCAGAGGACAGAAAGATGACAAGGCAAAAGTGAAACCGAAGCCAGATGAAGACATTAAGCCTGTGAAGGAGCCCGATGTTAAGTCTCAGATAGACACTGGATGTGTGATATCTTAGTCACTTAAGAAAACCTCCACCAGTTTGTCCGTCACTTGTAGACTCCTTGTAAAATCTGGTGGTAACTCTTGCATTTTTAATGTTGCAATATatactacagaaaataaatcttaTCGCAATGTTTCTCCCAACTATCTTCAACCCTCTAAGATTTTGAGATGTAAACAATATGTAAAATCACACATTTTAAGGAGAAAACTTGTCTGGATTTTTACTCCACCTACAGAAATCTGGTTCAAAGCAACCTTAAAAACTTACATTTCAGTAATCATCAAAACACTCAGATATACATGCAGAGCTCTTATTGCAAAGATAATGTATATTCAGCTGtaatttaaaaatggtttaacCAATTTTTCCCAAACTTATAGGGATTGTAGACGAATGTCAAACTTTGGTGGAACCACATTGCTTGGTGTTGCTGTTACAAACCAAAATTAATTTGCAACTAGATTGGAGTAGTGCTAGTATGTACTGTCCTGGTCAGTATCTATGGCTCTGATGTTAAACTAGAAAAACATGCCCACCATTGCGTTTAAGCAGGCACTTGGCAGCCTTAGGATTGGTCAATCACCAAAATAATATGTCTGTGTATGGCAGGGGTTGGCAAAAGTTGTGTTGGACCCCCACACTAATGGCGCGGGTTTGATCCCGGGTaaggagtggtgtgtttattcattttttcttttcatcttgggtttacctgccacagattttttttttgtggcccaacACGGCTTGGAAAATACCTGGCCtacagccaaacttaattgcagacCCCTGGTGTATGGACTTTATACTACCAGATAAAGTATGACGGGTGTCAGCACTAGGGGGTGCAgttcactttttaaaacactaaaataattaaaaaaggtcAAAAAAGTGGAATCAGCTAATGCAGCTTCATGAACCTGACAATTAGTAAACGACTTCTGTTTGCATACAAATGTTAATGGGTATTTGCATAGTTTCATTTCAAACTCCTCTACAGTTTAGATCCAGTCATCAACAGTGGTCTTAAAACAACAACCGAAAAGTAAAGTAAGAAAACTAACTTATTTAGATTAAATCTAGCATATATCTTTATTAGATACACTGACAAATACTCTTAATGTACCCTTGGATTTGTACAAAGGTTGACCTGATGTTTCAAGTAATAACAGTATAAAATAGTGCCAAGACATTTATGCCCATGACACCACTACATTCTGCCATCCTctctattttataaaataattaatgtcaCCAGTTTAAGTTAGCTTTTTCTGACCAGATTTTGAGCTATTGGTCGGGACTGTGCTTCATGGCAGTTTTCGCACCAGTTGTTTTGGTTTAGACCAAACTGACATTTATGAAAATCCAGCCCAAACAAGAAAGGTGTAAAAGCACCCTAAATATGTTTGTTTACCACTAATGTTGTCAGCACActtattttgtttggtttatagCTGAATTAAAGTGCATTGAGTAAAGTGCATATTGTtggattttaagtgatttttttgtgcttattgTTGTGTGGAAGTTAATAATATAGTTATAATATAGGTTAAGGGTTTTTGCATTGAGTAATAAATAATACTTGaa
>XM_007255626.3
CTGTTTATATTTCTGGTTTTCAGCTCTTTAGCTCGGTTCAACCAGATTCACTGAGGACTCTCTGGCGGGCTCCCTCTGGCGGCCGGCAGCAGCGCTCTGAGGTGTTGGTGTGTCTCCAGCCGCGCGATGACCCACTGGTTCCATCGAAACCCTCTGAAGGCCACAGCGCCCGTGTCCTTCAACCTGTACGGAGTTGCGTCCAGCCCTGCCGCCAGTAAAATCTGCAATGACCTGAGAACTAGCCGGGCCAGACTTTTGGACATGTTCACAGATGCTACCTGCACTCCAGAGATCATGAAGAAGGCCACCGATGAATATCTTTCCCTTTTACAGGGGTTCATTGTATCTCTGGATGGAACCGGGCAAGAGAACAAGCTGCGGTTCATTCAGAACTTCAGGTGGACTGACACTCTGCAAGGAAACACACCTAGttCTCAACAAGATGCTGTTTTTGAACTGGTGTCCATGGGGTTTAACATTGCCATTTGGCACACTAAATTTGCTTCAAGGCTTGCCGGAAAAGAAAAcatCACTGAGGATGAGGCAAAAGATGTGCATAAGAGCCTTAAAACTGCTGCAGGAATGTTCAAGTATCTCAAGGAGGTTCAAATACCGCGACTCATCACACCAGCTGAGAAAGGGCGAGACCTGGAGCCCAGGGTCATTGACACCTACATTGTGCAGAGTCAAGCTGAGGCTCAGGAAGTGACCATTGCCCGTGCAATTGAGCTGAAGCATAATGTGGGCCTTATTGCAGCTTTAGCATTTGAGACAGCAAACTTCTACCAAAAAGCTGATCATACTCTGAACACTCTGGATCCAGAATACAGCATGAAGTGGAGAAAATACTTGCAGCTGAAACAACATTTCTACATGGCTTATGCACACTGCTACCATGGACAGACTCTTTTGGCCAGTGACAAGTGTGGAGATGCCATACGATCCCTACAGGAGGCAGAAACATATTACTCCCGTGCAGAGGTGCTGTGTAAAGAATACCGTCAGACCAAGGGCCCAGGTAGCACTGCTAAACCCTCTGAACAACTGTTCTTCAGGAAACTTGGTGGTCTGATCAAAAACACTTTGGAAAAATGTCAGAGAGAAAATGGGTTCATATACTTCCATAAAGTGCCTGCAGAAGCACCCGTTTTGGAGCTAAAGGCAAGTTATGGTCTTGCAGAACCCATTTCCTTTGAGCTACCTGCTCTCAGTGACCAGTGCACTTTGGAGGTCTACGCCACATTTGATCTCACCAGAGGACAGAAAGATGACAAGGCAAAAGTGAAACCGAAGCCAGATGAAGACATTAAGCCTGTGAAGGAGCCCGATGTTAAGTCTCAGATAGACACTGGATGTGTGATATCTTAGTCACTTAAGAAAACCTCCACCAGTTTGTCCGTCACTTGTAGACTCCTTGTAAAATCTGGTGGTAACTCTTGCATTTTTAATGTTGCAATATatactacagaaaataaatcttaTCGCAATGTTTCTCCCAACTATCTTCAACCCTCTAAGATTTTGAGATGTAAACAATATGTAAAATCACACATTTTAAGGAGAAAACTTGTCTGGATTTTTACTCCACCTACAGAAATCTGGTTCAAAGCAACCTTAAAAACTTACATTTCAGTAATCATCAAAACACTCAGATATACATGCAGAGCTCTTATTGCAAAGATAATGTATATTCAGCTGtaatttaaaaatggtttaacCAATTTTTCCCAAACTTATAGGGATTGTAGACGAATGTCAAACTTTGGTGGAACCACATTGCTTGGTGTTGCTGTTACAAACCAAAATTAATTTGCAACTAGATTGGAGTAGTGCTAGTATGTACTGTCCTGGTCAGTATCTATGGCTCTGATGTTAAACTAGAAAAACATGCCCACCATTGCGTTTAAGCAGGCACTTGGCAGCCTTAGGATTGGTCAATCACCAAAATAATATGTCTGTGTATGGCAGGGGTTGGCAAAAGTTGTGTTGGACCCCCACACTAATGGCGCGGGTTTGATCCCGGGTaaggagtggtgtgtttattcattttttcttttcatcttgggtttacctgccacagattttttttttgtggcccaacACGGCTTGGAAAATACCTGGCCtacagccaaacttaattgcagacCCCTGGTGTATGGACTTTATACTACCAGATAAAGTATGACGGGTGTCAGCACTAGGGGGTGCAgttcactttttaaaacactaaaataattaaaaaaggtcAAAAAAGTGGAATCAGCTAATGCAGCTTCATGAACCTGACAATTAGTAAACGACTTCTGTTTGCATACAAATGTTAATGGGTATTTGCATAGTTTCATTTCAAACTCCTCTACAGTTTAGATCCAGTCATCAACAGTGGTCTTAAAACAACAACCGAAAAGTAAAGTAAGAAAACTAACTTATTTAGATTAAATCTAGCATATATCTTTATTAGATACACTGACAAATACTCTTAATGTACCCTTGGATTTGTACAAAGGTTGACCTGATGTTTCAAGTAATAACAGTATAAAATAGTGCCAAGACATTTATGCCCATGACACCACTACATTCTGCCATCCTctctattttataaaataattaatgtcaCCAGTTTAAGTTAGCTTTTTCTGACCAGATTTTGAGCTATTGGTCGGGACTGTGCTTCATGGCAGTTTTCGCACCAGTTGTTTTGGTTTAGACCAAACTGACATTTATGAAAATCCAGCCCAAACAAGAAAGGTGTAAAAGCACCCTAAATATGTTTGTTTACCACTAATGTTGTCAGCACActtattttgtttggtttatagCTGAATTAAAGTGCATTGAGTAAAGTGCATATTGTtggattttaagtgatttttttgtgcttattgTTGTGTGGAAGTTAATAATATAGTTATAATATAGGTTAAGGGTTTTTGCATTGAGTAATAAATAATACTTGaa

Function

symbol description
brox Predicted to be located in membrane. Orthologous to human BROX (BRO1 domain and CAAX motif containing).

NR:

description
PREDICTED: BRO1 domain-containing protein BROX isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255625.3 True 2983 mRNA 0.41 13 70856750 70867476
XM_007255626.3 False 2958 mRNA 0.41 13 70856750 70867662

Neighbor

gene id symbol gene type direction distance location
c3h8orf82 cunh8orf82,LOC103038903,LOC107704038,LOC107567028 coding downstream 213425 70640472 ~ 70643325 (-)
naprt LOC107728101,LOC107746003 coding downstream 216824 70622015 ~ 70639926 (-)
rhpn1 rhpn1,LOC107704026 coding downstream 236863 70600828 ~ 70619887 (-)
hlx hlx,LOC102784911 coding downstream 267753 70585895 ~ 70588997 (-)
mia3 NA coding downstream 384166 70452946 ~ 70472584 (-)
tshr tshr coding upstream 3201 70870863 ~ 70915650 (-)
snw1 snw1,LOC107681047,LOC106608236 coding upstream 186783 71054445 ~ 71060960 (-)
LOC103038639 ism2 coding upstream 209448 71077110 ~ 71086957 (-)
trnat-ugu_81 NA coding upstream 228969 71096631 ~ 71096703 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding upstream 231940 71099602 ~ 71105819 (-)
G32285 NA non-coding downstream 39047 70817272 ~ 70817703 (-)
G32279 NA non-coding downstream 62886 70793302 ~ 70793864 (-)
G32275 NA non-coding downstream 78900 70777149 ~ 70777850 (-)
G32267 NA non-coding downstream 105932 70748226 ~ 70750818 (-)
G32264 pycrl non-coding downstream 118271 70736265 ~ 70738479 (-)
G32316 NA non-coding upstream 97354 70965016 ~ 70973557 (-)
G32327 NA non-coding upstream 158027 71025689 ~ 71028881 (-)
G32326 NA non-coding upstream 158841 71026503 ~ 71029286 (-)
G32344 NA non-coding upstream 222839 71090501 ~ 71093213 (-)
G32346 NA non-coding upstream 293640 71161302 ~ 71163064 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1694846 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 2027730 68825989 ~ 68829020 (-)
G31622 NA other downstream 2765169 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 2916037 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 2971317 67855606 ~ 67885433 (-)
LOC103033556 LOC108410406 other upstream 50319 70917981 ~ 71043182 (-)
G32343 NA other upstream 221213 71088875 ~ 71089461 (-)
G32364 NA other upstream 270824 71138486 ~ 71142338 (-)
G32492 NA other upstream 1102842 71970504 ~ 71982053 (-)
G32557 NA other upstream 1373868 72241530 ~ 72242270 (-)

Expression


Co-expression Network