tsta3 (tsta3,LOC107672947)


Basic Information

Item Value
gene id tsta3
gene name tsta3,LOC107672947
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70705293 ~ 70726380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255635.3
TGTAAAAGAGCAGGACGCCCTGAGCGCCACTCACGAGTCTCCTGTAGGGGAATCAGACGGAGGTATCTGGCAACCAAACACCAGCGTTCACTGTACTCCACCAGTCTTCGTCTCCTCCACAGAGATCATCACACCGatggCAGGAAAAACTGGGTCCATGCGTGTGATGGTGACAGGTGGGAGTGGTCTGGTGGGAAAAGCGATAGAGCATGTGCTGAAGGAGGAAGGAGGAGCAAGAGAAGAGGAGGAATGGATTTGTCTGTCCTCCAAAGATGCAAACCTAATTGATGTAGCCGAAACAACAGCTCTGTTCCAGAAACACCGTCCCACACACGTCATTCATCTAGCAGCCATGGTGGGGGGGCTCTTTAAAAACATGAGACAGAACCTGGACTTTTGGAGAAACAACATGTACATCAATGACAATGTGCTACAAGCAGCTCATGATTTTGATGTGGTAAAAGTCGTATCCTGTTTGTCCACTTGCATCTTTCCAGACAAAACCACATACCCCATTAATGAGACCATGATTCACAATGGTCCTCCTCATGAATCTAACTTCGGTTATGCGTATGCAAAGCGAATGATTGATGTCCACAACAGagcATATTTTACACAGTATGGTCGGCGATACACATCTGTTATCCCTACAAACGTGTTTGGGCCACACGACAACTTCAACATAGAGGATGGTCATGTACTGCCTGGACTTATACACAAGACCTACATAGCAAAGAaggaGGGAACAAGTCTGCAGGTGTGGGGTTCTGGTCGCCCCCGGAGACAATTTATCTATTCCTTGGATCTAGCTCGTCTCATTCTGTGGGTTCTTAGGGAATACAATGAGGTGGATCCCATCATATTGTCAGTTGGCGAGGAGGATGAGGTGTCCATTAAAGAAGCAGCAGATGCAGTTGTTGAAGCTTTGGAGTTCAAAGGAGAAGTGGTTTATGACACAAGCAAAGCTGATGGTCAGTTTAAGAAAACTGCCAGCAATGCTAAACTCTGCAAGTACCTTCCTGATTTCACCTTCACACCATTCCACAAAGcCATCAAGGAGACATGTGACTGGTTTGTGGCCAACTACAACACCGCTCGCAAATGAGGATGGTGCTAGCTGTCTTACAGCAGGATGATGATAAGTTACAGCACAAATGTTGGACTTATTGCACTGTGAAACAGCCACCAATACTTGAGTAAAGTATTGAATAAATAGCTTAAAATGCTATAATGGAAAAAGCCTTAAAGGTACAAAGCGGGGAGTTTTTGCTGTTCAATTAGGAGATCATTATACACTTGCTGGAATTATCACAAATGATGGACATTCAACTTCCATTTATGATTCTGACAGGAAaactatttttctctctctattagaCATAAATAGTAGTTTATGAAGTAAAAAGTGTTATTTGATTGGCTTATGTGTCTTTTGTTAAGAATATATAACAAaccatgtttattttctttgttaaattACAAGTTCAGACATTTCCTTTTGTATGTTAcataatgttatatttttaactGTTGTTCTTTTTAACCTTACATCTGCTTTTAAACTGGTTCTCATAGATGgttgtgtgtttatatgaagACTTTAATGTTAAACATATTTGTTACTATAATAAGTACTATAATTTATGTTGGGTGAATAGTTTAACTAATGAGCCTTTGTGTGAGACCTTTCTTTATTCTGAAACTTTACAGTATGAGATACttttctgtaaaaatattaaGCCTTTTTAAATGCTTATTAGTAATACAGATACTTGCCAAAAA
>XM_022665653.1
GTAAAAGAGCAGGACGCCCTGAGCGCCACTCACGAGTCTCCTGTAGGGGAATCAGACGGAGGTATCTGGCAACCAAACACCAGCGTTCACTGTACTCCACCAGTCTTCGTCTCCTCCACAGAGATCATCACACCGGACATAAAGGAAAGACGTCACTGTGATGTGCACCGGTGTGAGATGTAAGGAAAAAACAGaggactgaattactgaatctTGTatggCAGGAAAAACTGGGTCCATGCGTGTGATGGTGACAGGTGGGAGTGGTCTGGTGGGAAAAGCGATAGAGCATGTGCTGAAGGAGGAAGGAGGAGCAAGAGAAGAGGAGGAATGGATTTGTCTGTCCTCCAAAGATGCAAACCTAATTGATGTAGCCGAAACAACAGCTCTGTTCCAGAAACACCGTCCCACACACGTCATTCATCTAGCAGCCATGGTGGGGGGGCTCTTTAAAAACATGAGACAGAACCTGGACTTTTGGAGAAACAACATGTACATCAATGACAATGTGCTACAAGCAGCTCATGATTTTGATGTGGTAAAAGTCGTATCCTGTTTGTCCACTTGCATCTTTCCAGACAAAACCACATACCCCATTAATGAGACCATGATTCACAATGGTCCTCCTCATGAATCTAACTTCGGTTATGCGTATGCAAAGCGAATGATTGATGTCCACAACAGagcATATTTTACACAGTATGGTCGGCGATACACATCTGTTATCCCTACAAACGTGTTTGGGCCACACGACAACTTCAACATAGAGGATGGTCATGTACTGCCTGGACTTATACACAAGACCTACATAGCAAAGAaggaGGGAACAAGTCTGCAGGTGTGGGGTTCTGGTCGCCCCCGGAGACAATTTATCTATTCCTTGGATCTAGCTCGTCTCATTCTGTGGGTTCTTAGGGAATACAATGAGGTGGATCCCATCATATTGTCAGTTGGCGAGGAGGATGAGGTGTCCATTAAAGAAGCAGCAGATGCAGTTGTTGAAGCTTTGGAGTTCAAAGGAGAAGTGGTTTATGACACAAGCAAAGCTGATGGTCAGTTTAAGAAAACTGCCAGCAATGCTAAACTCTGCAAGTACCTTCCTGATTTCACCTTCACACCATTCCACAAAGcCATCAAGGAGACATGTGACTGGTTTGTGGCCAACTACAACACCGCTCGCAAATGAGGATGGTGCTAGCTGTCTTACAGCAGGATGATGATAAGTTACAGCACAAATGTTGGACTTATTGCACTGTGAAACAGCCACCAATACTTGAGTAAAGTATTGAATAAATAGCTTAAAATGCTATAATGGAAAAAGCCTTAAAGGTACAAAGCGGGGAGTTTTTGCTGTTCAATTAGGAGATCATTATACACTTGCTGGAATTATCACAAATGATGGACATTCAACTTCCATTTATGATTCTGACAGGAAaactatttttctctctctattagaCATAAATAGTAGTTTATGAAGTAAAAAGTGTTATTTGATTGGCTTATGTGTCTTTTGTTAAGAATATATAACAAaccatgtttattttctttgttaaattACAAGTTCAGACATTTCCTTTTGTATGTTAcataatgttatatttttaactGTTGTTCTTTTTAACCTTACATCTGCTTTTAAACTGGTTCTCATAGATGgttgtgtgtttatatgaagACTTTAATGTTAAACATATTTGTTACTATAATAAGTACTATAATTTATGTTGGGTGAATAGTTTAACTAATGAGCCTTTGTGTGAGACCTTTCTTTATTCTGAAACTTTACAGTATGAGATACttttctgtaaaaatattaaGCCTTTTTAAATGCTTATTAGTAATACAGATACTTGCCAAAAA

Function

symbol description
tsta3 GDP-L-fucose synthase

NR:

description
GDP-L-fucose synthase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0042351 'de novo' GDP-L-fucose biosynthetic process biological_process
GO:0050577 GDP-L-fucose synthase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255635.3 False 1782 mRNA 0.40 10 70705293 70726380
XM_022665653.1 True 1863 mRNA 0.40 11 70705294 70726380

Neighbor

gene id symbol gene type direction distance location
arhgap39 arhgap39,LOC107672944,LOC107559071 coding upstream 2504 70648513 ~ 70702789 (+)
dusp10 dusp10,LOC107710641,LOC107559105,LOC107568217,LOC107739190,LOC107704023 coding upstream 199725 70489394 ~ 70505568 (+)
taf1a taf1a coding upstream 221590 70477060 ~ 70483703 (+)
aida aida,LOC107710640,LOC107568227,LOC107704043 coding upstream 254620 70438733 ~ 70450673 (+)
wasf1 wasf1 coding upstream 271115 70329887 ~ 70434178 (+)
pycr3 pycrl coding downstream 8270 70734650 ~ 70740593 (+)
eef1d eef1d,LOC107655838,LOC107728121 coding downstream 15049 70741429 ~ 70750818 (+)
LOC103036403 LOC108443229,LOC108261142 coding downstream 27869 70754249 ~ 70777780 (+)
LOC103037005 NA coding downstream 51489 70777869 ~ 70821292 (+)
LOC111191283 LOC107722802,LOC106911506 coding downstream 55571 70781951 ~ 70783787 (+)
G32120 NA non-coding upstream 24504 70679993 ~ 70680789 (+)
G32117 NA non-coding upstream 39363 70660684 ~ 70665930 (+)
G32103 naprt non-coding upstream 82135 70622440 ~ 70623158 (+)
LOC111191258 NA non-coding upstream 231370 70471152 ~ 70473923 (+)
G32023 NA non-coding upstream 234561 70467530 ~ 70470732 (+)
G32139 NA non-coding downstream 68179 70794559 ~ 70796103 (+)
G32174 LOC108410406 non-coding downstream 219594 70945974 ~ 70959757 (+)
G32210 ccnk,LOC107560198 non-coding downstream 376845 71103225 ~ 71105791 (+)
G32219 NA non-coding downstream 403310 71129690 ~ 71132041 (+)
G32379 NA non-coding downstream 534925 71261305 ~ 71291859 (+)
G32105 naprt other upstream 65554 70628932 ~ 70639739 (+)
G32009 cdc40 other upstream 376265 70303036 ~ 70329028 (+)
G31939 NA other upstream 505551 70196925 ~ 70199742 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 1543410 69007441 ~ 69161883 (+)
G31702 fam84a other upstream 1877721 68826643 ~ 68827572 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other downstream 130431 70856811 ~ 70867643 (+)
G32198 NA other downstream 347468 71073848 ~ 71075886 (+)
G32225 NA other downstream 411132 71137512 ~ 71141184 (+)
G32229 NA other downstream 441144 71167524 ~ 71169556 (+)
dab1 dab1,LOC107581465 other downstream 736720 71463100 ~ 71980363 (+)

Expression


Co-expression Network