c3h8orf82 (cunh8orf82,LOC103038903,LOC107704038,LOC107567028)


Basic Information

Item Value
gene id c3h8orf82
gene name cunh8orf82,LOC103038903,LOC107704038,LOC107567028
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70640472 ~ 70643325 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255638.3
AGAAAGTGgacacacactgctcactgtAACACTGCTCCTGTGGCAGCTGACTGACTACACAAATCCTGCTAAATAAAGCAGGTTATTTTCAGTAAGGGGTGAAATTCCAGGCGTGTCTTTACAAAGTAGGTTATCTACCTAACGTAGGCTTCAGTGGGGTGATATATTGAGCTTGTTGAGAGTGGAACTATTTATTCAGAGCCCTCAAATCCACCCGGTAGATGAACGGTGAGCACGGCTCGTTTGTAAACACTGCTGCAGGCTTCTGTGCTGGTCTATCGGCGGGATCCGCGCTGCGCTTCAGGGCTGATGGCGGCGGCTGCGCTGCTCCGCTGGGGGACAAGGAGCGCCGGGGGCCTGTGGTCGGCTGTGCGCGTGCCCGCCGTTTTCTCTAGAGGTCAGGTCTCGTACACGCAAGGGCAGAGTCCGGAGGCGCGCTCCCGCGAGTACTTCTACTACATAGACCACCAGGGTCAGCTGTTCCTGGATGATACCAAAGTGAAGAACTTTGTCACTTGTTTTAAAGATCCaaagtttcttgttttcttctttaaacAATTGAAAGTCAATCAGAGTGGTCGCTACCAGCAGCACTTCCCCTTTTTGTCATTGTGTGGACGTGAGAGGAACTTTCTGCGCTGTGACGATCAGCCAATCGTCTACACTCACCTGTTATCTAAAGCAGGATGTGAGGAGCGTCTTTCATACTGTGGAGGTGGGGATAAACTGACAGTTCTATTCAGGCCAGAATCTTTGTTCATGCATCCAGTCAGTGGTAGAGTGTACCACCCTGCTCCGGAGCATGTAGGGGGTGTTGGACTGGTGCGCTCTGCACTGGCCATTGAGCTCAGTCCTCATTTTCAGTACTCTTCAGGTCAGGACAACACTGCCCAGCCCACCCATTTTCTGTGGGCCGGGCAACAACACACTCTGACCAATGATTTGTCCAGACATTTTCTTTAGATTAATAATACTGTTTAGTTACATTTGAAATTATGCATTTGTGAGATATTGTAATTATATGTTTGTGAGAGAAATACCTGCACAATTATTCTGATTTATTCTGAGAATATGGTTTGATTGTGGAGATATGTAACTTTGTGTAtggttatttaaataataaaaggtaGGTTCAGGGTTTCTGAATGAAATATGCATTAAgttatgttaattaataaatacctATGGTCATTTTCAACAAGAATGTGTGATTTAGAATTCATGCAAAATGGCCCAGTGTACAAAGAAAGCTGTACACTAAACCTGAACTGGAAAGCCGGGATGTCCGCTTATATTACACAGTTTATTATCTTGTAAACAGTTTAGCTAGACCCTAATGTTCTTAACTTCTTGTACTACTTCACCTgtaatttgcattaaaaaaatgctttatctggtcttttattttacaatggcAGCTTGGCAGCAGGCAACAAGACAAAAAATACTGCCTTACTTTAGTTTGCCTTACTTGTGACTATTGCAtgtctgcatattgtgatgacGATGATACAATGTATTGTTCAACCCTAAATTAAACCCTTGATTTAAA

Function

NR:

description
UPF0598 protein C8orf82 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255638.3 True 1552 mRNA 0.44 3 70640472 70643325

Neighbor

gene id symbol gene type direction distance location
naprt LOC107728101,LOC107746003 coding downstream 546 70622015 ~ 70639926 (-)
rhpn1 rhpn1,LOC107704026 coding downstream 20585 70600828 ~ 70619887 (-)
hlx hlx,LOC102784911 coding downstream 51475 70585895 ~ 70588997 (-)
mia3 NA coding downstream 167888 70452946 ~ 70472584 (-)
cdc40 cdc40 coding downstream 311417 70302173 ~ 70329055 (-)
brox brox,LOC107732498,LOC107710643,LOC107568230 coding upstream 213425 70856750 ~ 70867662 (-)
tshr tshr coding upstream 227538 70870863 ~ 70915650 (-)
snw1 snw1,LOC107681047,LOC106608236 coding upstream 411120 71054445 ~ 71060960 (-)
LOC103038639 ism2 coding upstream 433785 71077110 ~ 71086957 (-)
trnat-ugu_81 NA coding upstream 453306 71096631 ~ 71096703 (-)
G32082 NA non-coding downstream 119548 70514094 ~ 70520924 (-)
G32080 NA non-coding downstream 132069 70507457 ~ 70508403 (-)
G32075 NA non-coding downstream 155006 70484280 ~ 70485466 (-)
LOC111191251 NA non-coding downstream 269217 70367067 ~ 70371255 (-)
G31985 NA non-coding downstream 430040 70208717 ~ 70210432 (-)
G32248 NA non-coding upstream 36616 70679941 ~ 70680789 (-)
G32261 tsta3,LOC102781768 non-coding upstream 73948 70717273 ~ 70726275 (-)
G32264 pycrl non-coding upstream 92940 70736265 ~ 70738479 (-)
G32267 NA non-coding upstream 104901 70748226 ~ 70750818 (-)
G32275 NA non-coding upstream 133824 70777149 ~ 70777850 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1478568 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 1811452 68825989 ~ 68829020 (-)
G31622 NA other downstream 2548891 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 2699759 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 2755039 67855606 ~ 67885433 (-)
LOC103033556 LOC108410406 other upstream 274656 70917981 ~ 71043182 (-)
G32343 NA other upstream 445550 71088875 ~ 71089461 (-)
G32364 NA other upstream 495161 71138486 ~ 71142338 (-)
G32492 NA other upstream 1327179 71970504 ~ 71982053 (-)
G32557 NA other upstream 1598205 72241530 ~ 72242270 (-)

Expression


Co-expression Network