cdc40 (cdc40)


Basic Information

Item Value
gene id cdc40
gene name cdc40
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70302173 ~ 70329055 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255653.3
AGATAGCCAGGACCCTCCTGACGTCACCCAACAACACTGAAGATGGCGGCGGTGCTCGGCTCCCTCGTTGCGTACGGCAGCGATTCCGATTCGGAAAATGAACCTGAGTCCAGCACGAGCCCGGAGAAAACACACCCGGACGCAGTGGCGCATCTCCAGCCTCTGAAATCCGACAGAACGACGAGTCTGGCTGTTCTCAATTCAGCGCCCGAGGTCGCTGTGAAGGAAGATGTTGAGACAGGCACACATTTGGATCCCTCACTTAAAGAGGTCAGCTACAACCCTACATATGACACCATGTTTGCACCTGAGtttggtccagttaatcCATTCAAGACACAGCAAATGGCTGCGCCGAGGAACATGCTCTCCGGTTATGCTGAGCCTGCTCATGTTAACGACTTCATGTTCGAACAACAGAGAAGAACGTTTTCCACATTCGGCTATGCATTGGACCCATCTGTGGACAACAGTCAGCTCTCTTCAAACAGTTATATTGGAGCAGTGGATgaggcagagaaaaaaaaagGTCTGACTGTTTTTGAAGCTGGCCCAAAGAAgggagagaagaggaagaaggtaAAAGGAGGGGATGCATCGGAGATTGACAGCTTCTTGGGACCCTGGGCCAAATATCAGGATGAAAAGGATGTTACCAAACCCTCAGAGgAGGAGCAAAAAGAGTTGGATGAAATTATAGCAAAGAGacaaaagaaaggaaggaatgAGGAAGAAGCACCTGCAGAGGAGAAGACCATTCTACACGTTAAAGATGCTTACGACTACCAAGGCCGGTCTTACCTGCACATTCCACAGGATGTGGGTATTAATCTGCGCTCAGCAGACATACCAGAGAAGTGCTATCTGCCCAAAAAGCAACTGCATGTCTGGACGGGACATACAAAGGGCGTCAGTGCTATTCGCTTGTTTCCTGTGTCTGGTCACCTGCTGCTTTCTAGTTCTATGGACTGCAAGATCAAGCTGTGGGAGGTGTACAGTGACCGGAGATGCCTACGGACATTTATTGGTCACAGTAAGGCAGTGCGTGATATCTGTTTCAATAACTCCGGTACTCAGTTCCTCAGTGCTGCTTATGATCGCTATCTCAAATTGTGGGATTCCGAGACTGGTCAGTGCATCTCCCGGTTCACAAACCGAAAAGTCCCCTACTGTGTAAAGTTCAATCCAGATGAAGACAAACAAAACCTGTTTGTTGCTGGAATGTCAGACAAGAAGATTGTGCAGTTTGACATCCGCTCAGGGGAGGTGGTTCAGGAATATGACCGTCACTTGGGAGCTGTCAATACAATCACGTTTGTGGATGAAAACCGGCGCTTTGTCAGCACCTCTGATGATAAGAGTCTGCGTGTGTGGGAATGGGACATTCCTGTAGACTTCAAATACATTGCAGAGCCCAGTATGCATTCAATGCCTGCTGTGACGCTTTCACCCAATGGTAAATGGCTGGCTTGTCAGTCCATGGATAATCAGATCCTTATATTTGGGGCTCAGAACCGGTTCAGGCTGAACAAAAAGAAGATCTTTAAGGGTCACATGGTGGCTGGATACGCCTGCCAGGTGGACTTTTCTCCAGATATGAGTTACGTGGTGTCTGGTGATGCTGATGGGAAGCTAAATATCTGGGACTGGAAGACCACCAAGCTCTACCACCGAATCAAAGCTCATGACAAAGTGTGCATCAGTGCTCTCTGGCATCCCCACGAAACTTCCAAGGTCATCACCTGCGGCTGGGACGGACAGATCAAACTGTGGGACTAAAAGAAGACTGTGAGAGAGTTGGAAAGTGGAACAAAGAGCCTGAACAGCATCTTTTTGCCAACTCATCATGTTTAATGCTTGGCATTGTACTCTACTCGTCCTGCAGCCCATTTGCCCTCCCTTGGCTTGCCCTTCTCAGGATGTTTGGTATTGGCTTTGTACAAAGACTAAAGTTTTAAAGGTTATGGGCTGGCATCCAGCCCCAACTTCtagttcattttttattatagacTTTCTCCGAGCTTGGAGATCTACTTTCCTGAGAGGTTCAAGTCTTTAATCTTCATTGAACAAGTCTGATCCAGATAATCAGTCCAGTTGTTGGTTAGATTTGGTCTCAGACAGAATGCTGTAAAAGAGTAGATCTCCAGTTCCTGCCCACTGCACTATTCTATTGTACACTAGCAGTGAAAGATAGGAACTTTGtgatttttctttcattattaaTGATGTTATTGAGTACTGAGGCaatgtttttcagttttaacaGATTCTTCAGTTTGTCATCAGATGTCTCTTTCTGaagataataaaacattttataatttttttcaagGGTTTGTAGTTATTGCTGGTAATCCAAGTCCAGTTTTTAATACTTGGTTTCTGATAATGAGTCTAATGATATAGTTCAGCTCTGGGCCACCCATGTTAAACGAAGGACCAGAGTGTTAATCCTGTTCCTGGTGAATTTCTCTGTGCTGCCTAAAAGTGGCTAGAACTTCTGAGCTCTTGAATGTTCAATAAACCACCATAACTTGGTTCTGAAAATGTGGTTAGTGTAAAGAGGCTGTGTCAAAAcattcaagaaaaaaaatgcaataacctaaaatgtaaatatctcTGTAGTTCAATTTGGAACCTGGGTACATAGTTCTCACTGTGAGGCATGCATAAGCCTTAAAAGTATCAGCAATCACTATGAAGAACGAAGGTTGGAATACAGTCAAAACTCACACATTCACTTTGGAATTGCGATCAAATCAGTATttcttaaagctttataaaaccttaatattttttttctccataaaTTGAACCTAAAACTTGCCTCTCACAGATATGTAATACTGGATTATTTtcctcaaaaaataaataaacaactcttgtctcattttttttctgtggttcagcatttgtgtgaaaaacatttgGGTCAAAAAAGTTTTGGGTCAAATTTAAGCAGAATTACAGAACATTCAAAAATTTTGTTGACTCACCAGTGTCCCTGTCTTACCTGTCTGAAGTAGTTTTAGGTATGAGGTGTACCACTTATGTCTAGGATGTGATGCCCACTGTTCATTTCAGTTCCATTTTAGAGCACAGCACAGATCACATATCAATAAATGATATTTTGTTAA

Function

symbol description
cdc40 Predicted to act upstream of or within cell division and mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human CDC40 (cell division cycle 40).

NR:

description
pre-mRNA-processing factor 17

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255653.3 True 3140 mRNA 0.43 15 70302173 70329055

Neighbor

gene id symbol gene type direction distance location
slc22a16 slc22a16,LOC107693213,LOC107602826,LOC107726421,LOC107696098,LOC107601215 coding downstream 70144 70214994 ~ 70232029 (-)
cd164 NA coding downstream 833098 69455687 ~ 69469075 (-)
sesn1 sesn1,LOC107601436,LOC107696127 coding downstream 863623 69361081 ~ 69438550 (-)
snx3 snx3 coding downstream 1058541 69223291 ~ 69243632 (-)
ostm1 ostm1 coding downstream 1114273 69180225 ~ 69187900 (-)
mia3 NA coding upstream 123891 70452946 ~ 70472584 (-)
hlx hlx,LOC102784911 coding upstream 256840 70585895 ~ 70588997 (-)
rhpn1 rhpn1,LOC107704026 coding upstream 271773 70600828 ~ 70619887 (-)
naprt LOC107728101,LOC107746003 coding upstream 292960 70622015 ~ 70639926 (-)
c3h8orf82 cunh8orf82,LOC103038903,LOC107704038,LOC107567028 coding upstream 311417 70640472 ~ 70643325 (-)
G31985 NA non-coding downstream 91741 70208717 ~ 70210432 (-)
G31990 NA non-coding downstream 102436 70196744 ~ 70199737 (-)
G31980 sash1 non-coding downstream 131242 70097578 ~ 70170931 (-)
G31974 NA non-coding downstream 197739 70078566 ~ 70104434 (-)
G31973 sash1 non-coding downstream 223840 70077633 ~ 70078333 (-)
LOC111191251 NA non-coding upstream 38012 70367067 ~ 70371255 (-)
G32075 NA non-coding upstream 155225 70484280 ~ 70485466 (-)
G32080 NA non-coding upstream 178402 70507457 ~ 70508403 (-)
G32082 NA non-coding upstream 185039 70514094 ~ 70520924 (-)
G32248 NA non-coding upstream 350886 70679941 ~ 70680789 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1140269 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 1473153 68825989 ~ 68829020 (-)
G31622 NA other downstream 2210592 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 2361460 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 2416740 67855606 ~ 67885433 (-)
LOC103033556 LOC108410406 other upstream 588926 70917981 ~ 71043182 (-)
G32343 NA other upstream 759820 71088875 ~ 71089461 (-)
G32364 NA other upstream 809431 71138486 ~ 71142338 (-)
G32492 NA other upstream 1641449 71970504 ~ 71982053 (-)
G32557 NA other upstream 1912475 72241530 ~ 72242270 (-)

Expression


Co-expression Network