afg1l


Basic Information

Item Value
gene id afg1l
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 69243718 ~ 69279965 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255677.3
GAGACACCAGCAAACAGCCAATCGTAACATTTTGCGATGGTGTGTCGTTGAGCTATACCTTACCCTTTttgaaaatatgatttttatttttttttctttacgaCTCGAAATGAAGATTATCTGGCTATGGTTTTGTATCGTATACTATGTAaccatattttaatttgttgtaaaataaaaaaaaatatatgtaaaaacgGAGCTGGATGAACGAGTCACATAAAGTCGTTGGGGTTTGAAGGAAGATGGCAGCGCCCTCGTCGAGTTTGATAAGGAGGTTTATTCTGagttattttaaacacagacaGGGCTCCAGAAGAAGGTGCTGCACATTATTTAAACCGACAAGAGGTTCCACTTTATCTTTAGGACATGCATCATTATCAACAATCTCACATGTTACCAAGCACAGTGGACCCATTGCTCACTACAACAACCTGGTACACTCTGGATTGCTCCATGAGGACATTCAGCAGAGAGCTGCACTTTGGCAGTTAGAGGAGCTACATCGACTGATAGCAGGGTACACCAATATTCCACTCGATTTATCTTTTACACAGCCAGGGGAGAACAGACACAGTAGCTTAAACTCAGACCCGTACAATGTCTTAGAAGATTCCAAGAATAGATTGATGACAAACACAAGGGCAAAGGATGGACAAGTGACACACCGGGACTCTGATGTTACATCAGTAAAACAAGGAGCAGAAGAAGTAGATGAATGCAGTGTAGAAAAGGCACCTGTAAAGCCACCTCCCCCTCGTGGATGCTACATTCATGGTGGTGTCGGGACTGGAAAAACAATGCTGATGGATCTGTTTAACTCTCATGTGACGAACAGCAGGAAAAAGAGGCTTCACTTCAACAGCTTCATGTTAGATATTCACAGACggATCCATCGACTGAAACAGAGTCTACCAAAACGACAGATAGGCAAAATGACAATCTACGATCCCATTTTTCCTGTTGCCATGGAGATTGCCTCAGAAACCTGCCTCTTATGCCTGGATGAATTTCagGTGGTGGACATTGCTGATGCTATGATTCTGAAGCAGCTTTTCAGTGGGTTGTTTTCATGTGGTGTGGTGTTAGTGGCCACCTCCAACCGGCCACCAGAAGaACTCTACAAAAACGGGCTTCAGAGAGCTGCTTTTGTGCCTTTCATCGGCGTGCTCAAGGAAAATTGCCGCACTCTCAGTTTGGACACTGGAATAGACTATCGCAGGAGAGAGATGTTGCCTCCAGAAAAATACTATTACATATCCAGCGAACCCGATGCAGAGGCCGCCGTGAATACGCTGTTCGATGAATTGGCTTACAGACAAAATGATGTAATGAGGCCTAGAGTGCTGACAGTGCAGGGCAGACAGCTGACCCTTAGCCGCACCTGTGGAACCATCGCAGACTGCACCTTTCAGGAGCTCTGTGACAGGCCATTAGGAGCAAGCGATTATCTGGAGCTAGTGCGGCACTTTGACACAGTCATCATCCGTAACGTGCCTCGATTGAAGGTTGGACTGAAAGACCAAGTCAGGCGTTTCATTACACTTATTGACATCTTCTATGACCAGAAGGTGAGAGTAGTGGTGTTGGCTGAGGCccctctgcagctcctctttGTTGGGGGCCCACTGTCTGGAGAAGAAGAGCGCGACCGTCTGATGTTGGATGAGCTTGGCCTGACCAATgaGTCATGGAAGCGATTGACACTATTCACAGCTGAGGAAGAGATTTTTGCCCTGCAGAGGACACTGTCTCGACTTACAGAGATGCAGACAGAGCAGTACTGGCTTCAAAGAGATGGAAGTTGAATGTGAAAATAGCACACAGAAACCAGTGTGTATTCTTGTCTTTGCAGGGGTATTTCCATTGACTTTTGTGTTGTCTCTGGGGAAATATTTaagctctttttttaataatggaaTGTTTTCAGAAAAATCCTTGTGTAAGGATTAAGACAAATAAAATCAACAGGCTACAGTTTAA
>XM_022665386.1
GAGACACCAGCAAACAGCCAATCGTAACATTTTGCGATGGTGTGTCGTTGAGCTATACCTTACCCTTTttgaaaatatgatttttatttttttttctttacgaCTCGAAATGAAGATTATCTGGCTATGGTTTTGTATCGTATACTATGTAaccatattttaatttgttgtaaaataaaaaaaaatatatgtaaaaacgGAGCTGGATGAACGAGTCACATAAAGTCGTTGGGGTTTGAAGGAAGATGGCAGCGCCCTCGTCGAGTTTGATAAGGAGGTTTATTCTGagttattttaaacacagacaGGGCTCCAGAAGAAGGTGCTGCACATTATTTAAACCGACAAGAGGACATGCATCATTATCAACAATCTCACATGTTACCAAGCACAGTGGACCCATTGCTCACTACAACAACCTGGTACACTCTGGATTGCTCCATGAGGACATTCAGCAGAGAGCTGCACTTTGGCAGTTAGAGGAGCTACATCGACTGATAGCAGGGTACACCAATATTCCACTCGATTTATCTTTTACACAGCCAGGGGAGAACAGACACAGTAGCTTAAACTCAGACCCGTACAATGTCTTAGAAGATTCCAAGAATAGATTGATGACAAACACAAGGGCAAAGGATGGACAAGTGACACACCGGGACTCTGATGTTACATCAGTAAAACAAGGAGCAGAAGAAGTAGATGAATGCAGTGTAGAAAAGGCACCTGTAAAGCCACCTCCCCCTCGTGGATGCTACATTCATGGTGGTGTCGGGACTGGAAAAACAATGCTGATGGATCTGTTTAACTCTCATGTGACGAACAGCAGGAAAAAGAGGCTTCACTTCAACAGCTTCATGTTAGATATTCACAGACggATCCATCGACTGAAACAGAGTCTACCAAAACGACAGATAGGCAAAATGACAATCTACGATCCCATTTTTCCTGTTGCCATGGAGATTGCCTCAGAAACCTGCCTCTTATGCCTGGATGAATTTCagGTGGTGGACATTGCTGATGCTATGATTCTGAAGCAGCTTTTCAGTGGGTTGTTTTCATGTGGTGTGGTGTTAGTGGCCACCTCCAACCGGCCACCAGAAGaACTCTACAAAAACGGGCTTCAGAGAGCTGCTTTTGTGCCTTTCATCGGCGTGCTCAAGGAAAATTGCCGCACTCTCAGTTTGGACACTGGAATAGACTATCGCAGGAGAGAGATGTTGCCTCCAGAAAAATACTATTACATATCCAGCGAACCCGATGCAGAGGCCGCCGTGAATACGCTGTTCGATGAATTGGCTTACAGACAAAATGATGTAATGAGGCCTAGAGTGCTGACAGTGCAGGGCAGACAGCTGACCCTTAGCCGCACCTGTGGAACCATCGCAGACTGCACCTTTCAGGAGCTCTGTGACAGGCCATTAGGAGCAAGCGATTATCTGGAGCTAGTGCGGCACTTTGACACAGTCATCATCCGTAACGTGCCTCGATTGAAGGTTGGACTGAAAGACCAAGTCAGGCGTTTCATTACACTTATTGACATCTTCTATGACCAGAAGGTGAGAGTAGTGGTGTTGGCTGAGGCccctctgcagctcctctttGTTGGGGGCCCACTGTCTGGAGAAGAAGAGCGCGACCGTCTGATGTTGGATGAGCTTGGCCTGACCAATgaGTCATGGAAGCGATTGACACTATTCACAGCTGAGGAAGAGATTTTTGCCCTGCAGAGGACACTGTCTCGACTTACAGAGATGCAGACAGAGCAGTACTGGCTTCAAAGAGATGGAAGTTGAATGTGAAAATAGCACACAGAAACCAGTGTGTATTCTTGTCTTTGCAGGGGTATTTCCATTGACTTTTGTGTTGTCTCTGGGGAAATATTTaagctctttttttaataatggaaTGTTTTCAGAAAAATCCTTGTGTAAGGATTAAGACAAATAAAATCAACAGGCTACAGTTTAA
>XM_022665393.1
GAGACACCAGCAAACAGCCAATCGTAACATTTTGCGATGGTGTGTCGTTGAGCTATACCTTACCCTTTttgaaaatatgatttttatttttttttctttacgaCTCGAAATGAAGATTATCTGGCTATGGTTTTGTATCGTATACTATGTAaccatattttaatttgttgtaaaataaaaaaaaatatatgtaaaaacgGAGCTGGATGAACGAGTCACATAAAGTCGTTGGGGTTTGAAGGAAGATGGCAGCGCCCTCGTCGAGTTTGATAAGGAGGTTTATTCTGagttattttaaacacagacaGGGCTCCAGAAGAAGGTGCTGCACATTATTTAAACCGACAAGAGGTTCCACTTTATCTTTAGGACATGCATCATTATCAACAATCTCACATGTTACCAAGCACAGTGGACCCATTGCTCACTACAACAACCTGGTACACTCTGGATTGCTCCATGAGGACATTCAGCAGAGAGCTGCACTTTGGCAGTTAGAGGAGCTACATCGACTGATAGCAGGGTACACCAATATTCCACTCGATTTATCTTTTACACAGCCAGGGGAGAACAGACACAGTAGCTTAAACTCAGACCCGTACAATGTCTTAGAAGATTCCAAGAATAGATTGATGACAAACACAAGGGCAAAGGATGGACAAGTGACACACCGGGACTCTGATGTTACATCAGTAAAACAAGGAGCAGAAGAAGTAGATGAATGCAGTGTAGAAAAGGCACCTGTAAAGCCACCTCCCCCTCGTGGATGCTACATTCATGGTGGTGTCGGGACTGGAAAAACAATGCTGATGGATCTGTTTAACTCTCATGTGACGAACAGCAGGAAAAAGAGGCTTCACTTCAACAGCTTCATGTTAGATATTCACAGACggATCCATCGACTGAAACAGAGTCTACCAAAACGACAGATAGGCAAAATGACAATCTACGATCCCATTTTTCCTGTTGCCATGGAGATTGCCTCAGAAACCTGCCTCTTATGCCTGGATGAATTTCagGTGGTGGACATTGCTGATGCTATGATTCTGAAGCAGCTTTTCAGTGGGTTGTTTTCATGTGGTGTGGTGTTAGTGGCCACCTCCAACCGGCCACCAGAAGaACTCTACAAAAACGGGCTTCAGAGAGCTGCTTTTGTGCCTTTCATCGGCGTGCTCAAGGAAAATTGCCGCACTCTCAGTTTGGACACTGGAATAGACTATCGCAGGAGAGAGATGTTGCCTCCAGAAAAATACTATTACATATCCAGCGAACCCGATGCAGAGGCCGCCGTGAATACGCTGTTCGATGAATTGGCTTACAGACAAAATGATGTAATGAGGCCTAGAGTGCTGACAGTGCAGGGCAGACAGCTGACCCTTAGCCGCACCTGTGGAACCATCGCAGACTGCACCTTTCAGGAGCTCTGTGACAGGtgtgctttggatcattgtcctgctgcagaacccaagtatgcctgGTCACAAACTAATGGGAGGACATTCATGGTTCCATCtcttacagcaagttgtccaggccctgaagcagcaaagcagccccagaccatcacactaccaccaccatgttttacattcagtatgatgttcttttttttattattgttagttTTATGCCATATTTAACTGGACACACACCTTGCAAAAGGTTACACTTTTCTGTCACCAGCCAACAG

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K18798 AFG1, LACE1; peroxisome-assembly ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255677.3 True 1986 mRNA 0.44 13 69243718 69279965
XM_022665386.1 False 1968 mRNA 0.44 13 69243718 69279965
XM_022665393.1 False 1690 mRNA 0.44 11 69243718 69273322

Neighbor

gene id symbol gene type direction distance location
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding upstream 27855 69203834 ~ 69215863 (+)
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding upstream 519075 68352427 ~ 68724643 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding upstream 1201350 68023937 ~ 68042368 (+)
LOC103035042 LOC108439590 coding upstream 1224727 68004234 ~ 68018991 (+)
LOC103045824 LOC108256302,LOC108439581 coding upstream 1313803 67878540 ~ 67929915 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 6050 69286015 ~ 69321707 (+)
armc2 NA coding downstream 58576 69338541 ~ 69359553 (+)
cep57l1 NA coding downstream 161478 69441443 ~ 69450742 (+)
LOC103045488 grm1a,grm1,LOC108436473,LOC108279026,LOC107679500 coding downstream 195877 69475842 ~ 69522615 (+)
LOC103025939 rab32,rab32a,LOC107679502 coding downstream 244066 69524031 ~ 69551783 (+)
G31724 NA non-coding upstream 143156 69097291 ~ 69100562 (+)
G31720 NA non-coding upstream 203794 69038510 ~ 69039924 (+)
G31715 NA non-coding upstream 276908 68966479 ~ 68966810 (+)
G31648 NA non-coding upstream 583611 68625289 ~ 68660107 (+)
G31629 NA non-coding upstream 962122 68281340 ~ 68281596 (+)
G31758 NA non-coding downstream 175776 69455741 ~ 69546704 (+)
G31932 NA non-coding downstream 825613 70105578 ~ 70106122 (+)
G31938 NA non-coding downstream 905646 70185611 ~ 70187725 (+)
G31993 slc22a16,LOC107693213,LOC107601215,LOC107732637,LOC107696098 non-coding downstream 936266 70216231 ~ 70217718 (+)
G32014 NA non-coding downstream 1097732 70377697 ~ 70379706 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other upstream 81835 69007441 ~ 69161883 (+)
G31702 fam84a other upstream 416146 68826643 ~ 68827572 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other upstream 1220778 68020040 ~ 68022940 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 1399084 67691441 ~ 67844634 (+)
G31407 NA other upstream 1746021 67497203 ~ 67497697 (+)
G31939 NA other downstream 916960 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 1023071 70303036 ~ 70329028 (+)
G32105 naprt other downstream 1348967 70628932 ~ 70639739 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other downstream 1576846 70856811 ~ 70867643 (+)
G32198 NA other downstream 1793883 71073848 ~ 71075886 (+)

Expression


Co-expression Network