tshr (tshr)


Basic Information

Item Value
gene id tshr
gene name tshr
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 70870863 ~ 70915650 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255681.3
TTACAAAGTGGTAAATTTCTACAAAACTTTTAGAAAACTTTTTTGTCGGATTTTTCAGGTCTGACTCTTACCGCTAAGTCATTAGTAGTCACGCGCATGAACATGTAAGTGCGAATAGTTTAGCCGTGTTTTGGCTGAAGGCGGCTGTGTGCAGCGCAGTGTCCGGAGGCGATGTTCCCCAGGGCGCCGCGCTGGCGCTCAGAGCACGCTTCACTGCTGCTGCGCAGGACACTCATGATGAAACTCTCTGAACACGAGCATTCCTCCAGCTCTCAGAGAGAACTGAGAGACCCCCTCCCACTCACAGTCCGAGAGAAATAACCGCAGATTAACCTCTTCATCCGGGGATCACTGTGCGCATTCACCCTCTACCTTCATAAACTGGATCTTGCGAAAGACACTGGAGATGCGAGGATTAGGGTCCGCGCTGGTAACTCTCTACAGCCTGTTATCTGTGGCTCTCGGCGGAGACTCTGATCTGTGTCCGGATGGATGTGAATGTTCAGAGTGGAGAAGCTTCTCTGTCTCATGTAGTGAAATAGGTGCTATACCCATGTTTCCTGCCAAAACCGAGACACTGCGTCTCTACGAAACAAGACTGACTTCTGTGCCTAAGGATGCATTTGCCAATATGGTGAACATCTCAGTAATATATCTATCAGTGGATGTTTCTCTGAGGAGGATAGAAAAACATTCGTTTTATAACCTAAAGAAGATCACACATATagAAATAAGAAACACCAGACGTCTGACAATCATCCATCATGAGGCTTTTAAGGAACTCCCAAATTTGAAATACTTAGGTTTGTGCAACACTGGTCTTACCGTGTTCCCGGACCTGGCCAGGATTCACTCTGGTGATCCACTCTTTATGCTaGAAATAACTGATAATCTTTACATCACTGAAATTCCTGTCAATGCATTCCAAGGCATTTCCAATGACGTACTAACACTGATGTTATATAGTAATGGCTTTACTAAAATTCTGCACCATGCCTTCAATGGAACAAAACTAGATTCTGTATACCTTCACAGAAACAAGCAACTCACTGGACTTGACGACAGCATGTTTGCAGAAACCATCAGTGGTCCAGTGCTTCTtgatgtTTCAGAATCTGGCATCACCTCCCTTCCAACAAGAGGACTGGAGTCCCTGCGGGAACTAAGTGCTCGGAATGTTTGGGCTCTCAAAAAGCTTCCACCAGTCCAAAACTTCAGAAGTCTTACCATTGCTGATCTGACGTATCCAAGTCACTGCTGTGCTTTCAAAAAtcttaagaaaaagaaaggGATCCTGGAGGATGTAATTTGTAACTTGACTGCCATGTACAACCACCATCATAAGAGATCCACTGGCATGCAAGTAGTCCCAGCCTTCCATGGTAGTACAAACCAAGGCGTTGACTCTAACATCTGGAATGTGGACACCTACGACCATCAGGATTTCCACGGTAGTCTGAATTACCAAGCCTCTATTGGCGGACAccctgatgatgatgatgtgggCTTTAGGGACACACTAAAGAACACCCAGGGGGACACTCTTCAGGACTTTGACAGTCCCTATGACTATGTTGTGTGTGAGGATGGAGAGCAGGTTTCATGCTTCCCAACTCCTGATGAGTTCAACCCATGTGAAGATATTATGGGCTTCAGTTTCCTGAGAGTGTCTGTTTGGTTTGTCAGTCTTTTGGCTGTATTGGGGAATCTTTTTGTTCTCTTTGTGCTTCTTACAAGTCGCTTTAAACTTTCTGTCTCCCGGTTCCTTATGTGCCATCTGGCCTTTGCTGACTTATGCATGGGTTTCTACTTGCTTCTCATAGCCTCGGTGGACCTTTACACTCAGTCAGAGTACTATAATCATGCTATAGACTGGCAGACAGGGCCCGGGTGCACCCTTGCTGGTTTCTTTTCTGTCTTTGCCAGTGAATTATCAGTTTACACACTGACTATTATCACTTTGGAGCGCTGGCATGCCATTAATTTTGCAATGCGCTTAGATCAAAAGCTGCGTATGTCCCATGCCTGTGCCGTCATGTTTGGAGGTTGGCTTTTCAGCCTTCTGCTTGCTCTAATGCCTGTTTTAGGGATTAGCAGCTACCAGaaggtcagtatctgtctgCCCATGGACACTCCTTCGCTTGTGGACCAAATCTACATTCtctttctgcttgtttttaacattttagccTTTGTGGTCATCTGTTTTTGCTACATCAAGATATACTGTACTGTGCACAACCCCACCTACACCTCAGCCAGAAAAGACACTAACATTGCCAAGCGCATGGCTATACTTATTTTCACAGATTTTATTTGCATGGCACCCATCTCTTTCTATGCTTTGTCAGCTGTGCTGGACCACCCACTCATAACCATTTCTAACTCCAAGATCCTGCTGGTGTTATTCTACCCACTAAACTCCTGCGCTAATCCTTTTCTATATGCTATTTTCACCAAAGCCTTTCGCGGTGATGTATTTATTCTTCTCAGTAAAGCCGGCATATGCGAGCGGCAAGCCCAGCTGTTCCGAGGGCAAACCATCACTTCCAAAGCAAGTAGTGGAGGCACAAACAggcgacagagagagacaagatCTCTTGAGAAAACTCCAATTAACACGCTGGAGTTTTCAGGCCAAGAAAGAATGAGGGAAACATaaacctattttttattttattgtacacACATTTCTACATACagaatataagccatttattgcTGAGTTGTGCCTTTATAAGACAGTTTATG

Function

symbol description
tshr Enables thyroid-stimulating hormone receptor activity. Acts upstream of or within skeletal system development. Predicted to be located in basolateral plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in thyroid follicle and thyroid primordium. Used to study hyperthyroidism. Human ortholog(s) of this gene implicated in Graves' disease; cardiomyopathy; congenital nongoitrous hypothyroidism 1; and mitral valve prolapse. Orthologous to human TSHR (thyroid stimulating hormone receptor).

NR:

description
PREDICTED: thyrotropin receptor

GO:

id name namespace
GO:0038194 thyroid-stimulating hormone signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004996 thyroid-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04249 TSHR; thyrotropin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255681.3 True 2751 mRNA 0.45 10 70870863 70915650

Neighbor

gene id symbol gene type direction distance location
brox brox,LOC107732498,LOC107710643,LOC107568230 coding downstream 3201 70856750 ~ 70867662 (-)
c3h8orf82 cunh8orf82,LOC103038903,LOC107704038,LOC107567028 coding downstream 227538 70640472 ~ 70643325 (-)
naprt LOC107728101,LOC107746003 coding downstream 230937 70622015 ~ 70639926 (-)
rhpn1 rhpn1,LOC107704026 coding downstream 250976 70600828 ~ 70619887 (-)
hlx hlx,LOC102784911 coding downstream 281866 70585895 ~ 70588997 (-)
snw1 snw1,LOC107681047,LOC106608236 coding upstream 138795 71054445 ~ 71060960 (-)
LOC103038639 ism2 coding upstream 161460 71077110 ~ 71086957 (-)
trnat-ugu_81 NA coding upstream 180981 71096631 ~ 71096703 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding upstream 183952 71099602 ~ 71105819 (-)
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding upstream 258579 71174229 ~ 71177206 (-)
G32285 NA non-coding downstream 53160 70817272 ~ 70817703 (-)
G32279 NA non-coding downstream 76999 70793302 ~ 70793864 (-)
G32275 NA non-coding downstream 93013 70777149 ~ 70777850 (-)
G32267 NA non-coding downstream 120045 70748226 ~ 70750818 (-)
G32264 pycrl non-coding downstream 132384 70736265 ~ 70738479 (-)
G32316 NA non-coding upstream 49366 70965016 ~ 70973557 (-)
G32327 NA non-coding upstream 110039 71025689 ~ 71028881 (-)
G32326 NA non-coding upstream 110853 71026503 ~ 71029286 (-)
G32344 NA non-coding upstream 174851 71090501 ~ 71093213 (-)
G32346 NA non-coding upstream 245652 71161302 ~ 71163064 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 1708959 69145308 ~ 69161904 (-)
fam84a fam84a other downstream 2041843 68825989 ~ 68829020 (-)
G31622 NA other downstream 2779282 68091220 ~ 68091581 (-)
LOC103046133 LOC108439589 other downstream 2930150 67932560 ~ 67940713 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other downstream 2985430 67855606 ~ 67885433 (-)
LOC103033556 LOC108410406 other upstream 2331 70917981 ~ 71043182 (-)
G32343 NA other upstream 173225 71088875 ~ 71089461 (-)
G32364 NA other upstream 222836 71138486 ~ 71142338 (-)
G32492 NA other upstream 1054854 71970504 ~ 71982053 (-)
G32557 NA other upstream 1325880 72241530 ~ 72242270 (-)

Expression


Co-expression Network