LOC103040467 (LOC108444278)


Basic Information

Item Value
gene id LOC103040467
gene name LOC108444278
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35807467 ~ 35810107 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256415.3
GACTCATCAGACTTCAGTGTTTTAACTCAAATGGCTCAAATCTCGCGCTCTGTGTGCGCGCTCCTGGCGCTGTTGTGCGCGTTCTCGCCGCCTGTGCGCGCCGCCGCCGGTCAGTACTGTCACGGCTGGGGCTCGTTCCCGGGATTCCGCTGTCCGGAGCGCCACGACGGAGGAGACGCGCGCTACTGCTGCGGCACGTGCACCGTGCGCTACTGCTGCTCGTCCCCGAGCGCGCGCCTCGACCAGAGCACGTGCGACGCGGAGCAGCCGGCCGGCGGAAACGGCGGAGTGAGGACTCTACAGCAAGCAGTTCCCACATATCTGCCATTTGTCATCGTGGTGGGCGCCTTTCTTTCCTTCGTTCTACTGGGGATCATCATATCCATCTGCTGCTGCCACTGTGTGAAGCCCAAGCCCACCGCCGGATCGGCTCCGGCCCAGACCAGCCTGTTGGAGCCTGTTATTGGCCCCTCCCCCAACAACTCCACGCCTTCACGTTCTTCTACCTCCGGGTCAGCCGGACCACACCCGTTTACAGCCCCCATGCCGCAGCCCTTCGTTTCTGCGCCACCTCCTCCACTCCACCAGGGGGCACCACAGTTTTTCCAGCCATTCCTAAACTACTCGCTGCCTCCGGAACACACCATGCTGATGGCCCCAGCCTTTCTCGACAGTCGCTCTGCTTTCAGTCAGGCACACGGACAGCCTTTCCCACAGGCCCCCATGCACACTGAACCAATCTACCCCACCGTCACTGTCTGATGAGGTCATGGACTACAGCTTcctttttgatttgttttgtttgcaaaCTTGTTGGTGTTTGCGGACTTAGACTTCTGTTTCAAGATCGCATAACATTTAGGTTTAGCTTATTATTCTGGCATCACATTTTACTTACCTTACGTAATCTTCACACTTCCCTGCAGGCATGTAATAGTATTAGATGTTATCCTGGCGTAAAATTTTTGTCTCATGTCATGTCCAACACATAACCTGAAGTTAACATCCAACGTACTAacgttggtggccagctgggttACTACTATagattacagtaaaaaaagtatgCAAATTAATTAAGAAACTAAACTTAGTATCTTCCTCAAATTGTTAAGTAACtgctaagtaaaaaaatatgatttaataacTACTACTGTAGTCTCAGGGGGTACTAGAGAACACAAATATCGTAgattaatatgtaataatatatttaaaaaagggaaATGATTTGCCTCTGCCAGATTGTGGCCCTTCAGTGTTGAATTTTAAAGCAATAATTGTACAAATCGTTCTACCTCAGATGCAGTTtgattttgtgtgtttaggAGCTAGGATGCTAATGGCTAATGCAGCTAACAattgttgctttaaaaaaatctgttaatttTACTTTCTTTACTTGACTGTGTTTTCTAATTTTGCTTCTTATAGGAGTGTACTGTGCTTAAagcatttttgtaaaatgtttccttttttacttattatgtGGAATTTATTTAACGAAGacaaataaagttttattttatcacaaata

Function

NR:

description
PREDICTED: protein shisa-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256415.3 True 1537 mRNA 0.47 2 35807467 35810107

Neighbor

gene id symbol gene type direction distance location
gab3 gab3,LOC107557096 coding upstream 131146 35638347 ~ 35676321 (+)
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding upstream 347128 35448642 ~ 35460339 (+)
hddc2 hddc2,LOC107580122 coding upstream 987147 34816867 ~ 34820320 (+)
esco2 NA coding upstream 1131525 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 1181872 34597882 ~ 34625595 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 13089 35823196 ~ 35850191 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 67086 35877193 ~ 35923957 (+)
LOC103037324 NA coding downstream 131988 35942095 ~ 35964597 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533 coding downstream 801156 36611263 ~ 36619989 (+)
LOC111191796 NA coding downstream 816661 36626768 ~ 36628605 (+)
G23866 NA non-coding upstream 9391 35797712 ~ 35798076 (+)
G23860 mtmr8,LOC108444279,LOC107557116 non-coding upstream 9850 35749948 ~ 35797617 (+)
G23862 amer1 non-coding upstream 36863 35763969 ~ 35770604 (+)
G23844 NA non-coding upstream 247145 35560087 ~ 35560322 (+)
G23842 NA non-coding upstream 262910 35544332 ~ 35544557 (+)
G23869 NA non-coding downstream 11193 35821300 ~ 35821831 (+)
G23872 NA non-coding downstream 18325 35828432 ~ 35830702 (+)
G23876 las1l non-coding downstream 51095 35861202 ~ 35863662 (+)
G23929 NA non-coding downstream 114237 35924344 ~ 35924568 (+)
G23967 NA non-coding downstream 194534 36004641 ~ 36039409 (+)
trdn NA other upstream 505120 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 1842959 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 2027564 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 2211756 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 2638075 33083642 ~ 33169392 (+)
LOC103040783 LOC108411309 other downstream 233324 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 439717 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 1778999 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 2118248 37928355 ~ 37933989 (+)
G24390 NA other downstream 2282867 38092974 ~ 38098324 (+)

Expression


Co-expression Network