vipas39 (vipas39,LOC107723381,LOC107746035,LOC107701516)


Basic Information

Item Value
gene id vipas39
gene name vipas39,LOC107723381,LOC107746035,LOC107701516
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44460685 ~ 44471931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256619.3
GTCTCACATCgatttaaatattacatttcattttcagacttttattttggaggGTGTCTGAGCCAACGCTGCCCGGAAGTGATCAGCTGACGTTTCATGGTTTTGATTAGGCTGCAAAATCTCGAAGATGAGCAGAGCCAAGCCAGAGGACGATGAGTACTGGAACAGCTCCAAGTTCAGCGCCTTCACCTtcgatgatgaagatgatgagtTCACTAAGATGAAAGAATCAAAGCGTGCCGTGAACAGCATtcttgttgatgatgatgacgacgaCGATGATGTTGAGAAGGTCAGCTGGAGTGGGGAGCCTATTGGAAgTATCTCCTGGTCAGTCAAAGAGACGGCTTCCAGCTTTCGTTCCAGTGGGGAACAGAGCTTTCCAAAAATCGACACTGCCCCCTCGTTGCCTAAACAGGGTTCTGGTTACTCCTTAAGTTCCTTGTTCAAAGCAAAGAGCAAGCCCTTCCAGTCATTTTCGGAATCTTTTACTGATACATCAACCAGAGCTTATGCACCAGAACTGCGCAAACCGAAGTCGGAGTGTAAGGATTATATGAGCGACTGGAGCCCTGAGGAGACAGTTCGACGGATGCGGAAAGGAAGGgCGTATTCCCTGGAAAGGTTCCGCTCTCTGCAGGATAAATTGCTGCTGTTGGACGAGGCAGTCAGCTTACATGATGGCAATGTTATAACTGCTgtattaatatatttaaagaggTCATTAAGTAAAGAAATCCTCTTCCGGGAGTTGATGGTGAGGGAAGTAGCTTTGCGGCATTATGTTCACTATCTGAAAGAGATGGGCGAGCAGAAGCTTTTGGTGGAGCTGATGAAGGCCCTTGGCAGAACAGAGGATATGGCATTAATGCAGTACAAGGAGCATTTGAATATAAAGGACGAAGGCCGAAGAAGGGACTTCCTTAAAAGTTGTCTAAgTCTTCCTTTCTCACAAGATGATGCCATGCATGTACAAGACCATTACACACTTTTGGAGAGACAGATCATCATAGAGGCAAATGACAAGCGGGGGGAGGCAGAAATCTTTAGGAAATACCCTAGAAAGGCTTCCATCCTGAACATGCCACTGATCACCACACTTTACTACTCCTGCTTTTACCACTACGGAGAACCCGAGggTACTTTCAGCAGCCCCGCTAACATCAGGAAAACATTCAGGATTTCAGAAAAGCAGTACATCCTCACAGCTCTTGGAGCCAGGGCAAAGTTGAAATCCTGGTTTGATGTGGATAGTTTATTCAACACCAAGAACTGGCTGGGTTACACCAAGAAAAGATCCCCCATCGGCTTTCACAGAGTGGTGGATATCCTGCAGAAAAACAATGCACCTGCCCAGGTGTTGCAAGAATATGTGAATTTGATCGATGACCCAGAGCTGAGGCTGAGCCTGGCTCAGAAATATAAATGTCATGACATTGTGATTGATACATACAAAGATCTGAAGGACCGGCAGCAGCTGATTGTGTATCAGGGTAAAGTGGAGCGTGGCTCACATGAAGACAGAAAGATTGAGGAGCTGATAAATAACATGCAAATCAGGTGGAAGAACTGACCTTTGAAGGCTGAGGGGTAATATTTTTTCAGCTGATGCACGGCCAAACTTCATAAAAGGACTTAAAAGCTGTCGTAGTATTAACACAGTCTGAGAGCAGCCTTTTTAGTTTTTCTGTGTTGGTGGATCAAAAGGAGGACGGTCACAGATCCACAAACAAGTCATACTTCCTTCACCTGCCTTTTCATTATCATATTGCCATCTGCATCTTGGAATATATTTTCCTGGCTTGTCATGGCTGTAGAGCTGCCAAGTGTCCTTTTGCCAACAACAGTGAAAAACTAACTTGCATTTTGAGGAAGAAATGCATAACCGGGAGCGGCTGAACTGCACAGACCATTGTATGTTGTCCTTATTTACATCACTGTCTGTATTGAACATTCCTGATTAATGGATTTTTGTATCAAAAAAGGTGAACAcgaatttatttaataaaaacatatttaaactgtt

Function

symbol description
vipas39 Acts upstream of or within hepaticobiliary system development. Predicted to be located in early endosome; late endosome; and recycling endosome. Predicted to be active in cytoplasm. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in arthrogryposis, renal dysfunction, and cholestasis 2. Orthologous to human VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007283 spermatogenesis biological_process
GO:0015031 protein transport biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0005769 early endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0055037 recycling endosome cellular_component

KEGG:

id description
K23287 VIPAS39, VPS16B; VPS33B-interacting protein in polarity and apical restriction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256619.3 True 2026 mRNA 0.44 19 44460685 44471931

Neighbor

gene id symbol gene type direction distance location
cdc42bpb cdc42bpb,LOC107684799,LOC106571112,LOC107746049 coding upstream 426 44417438 ~ 44460259 (+)
LOC103042260 NA coding upstream 101282 44357276 ~ 44359403 (+)
LOC103041645 mcm3,LOC107732373,LOC107698330 coding upstream 113029 44339246 ~ 44347656 (+)
pnoc pnoc coding upstream 162966 44281122 ~ 44297719 (+)
elp3 elp3,LOC107696156,LOC107698368,LOC107599080 coding upstream 206453 44219205 ~ 44254232 (+)
LOC103046392 LOC103046392,LOC108414880 coding downstream 2217 44474148 ~ 44479904 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding downstream 201199 44673130 ~ 44693172 (+)
LOC111197225 LOC108410507 coding downstream 238442 44710373 ~ 44727205 (+)
wdcp wdcp,LOC107600078 coding downstream 331628 44803559 ~ 44808849 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding downstream 400533 44872464 ~ 44960236 (+)
G26124 NA non-coding upstream 83158 44377325 ~ 44377527 (+)
G26121 NA non-coding upstream 92754 44364592 ~ 44367931 (+)
G26107 LOC108439850 non-coding upstream 136863 44319986 ~ 44323822 (+)
G26088 NA non-coding upstream 188181 44272294 ~ 44272504 (+)
G26043 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107698369,LOC107726431,LOC107599081 non-coding upstream 197483 44256473 ~ 44263202 (+)
G26202 NA non-coding downstream 211257 44683188 ~ 44688403 (+)
G26216 NA non-coding downstream 263903 44735834 ~ 44736653 (+)
G26217 NA non-coding downstream 265236 44737167 ~ 44738115 (+)
G26225 NA non-coding downstream 296226 44768157 ~ 44768487 (+)
G26226 NA non-coding downstream 297331 44769262 ~ 44770002 (+)
LOC103033920 LOC108416105 other upstream 966369 43490323 ~ 43494316 (+)
G25880 NA other upstream 1035779 43424392 ~ 43424906 (+)
G25879 NA other upstream 1038639 43421771 ~ 43422046 (+)
rps29 NA other upstream 1097241 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1198586 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 2056437 46528368 ~ 46549553 (+)
G26915 NA other downstream 3806336 48278267 ~ 48315894 (+)
G26995 NA other downstream 4083866 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 4106872 48578803 ~ 48618075 (+)
G27075 NA other downstream 4269283 48741214 ~ 48742439 (+)

Expression


Co-expression Network