LOC103027424 (si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761)


Basic Information

Item Value
gene id LOC103027424
gene name si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59445511 ~ 59486743 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256642.3
TCCGCGCGGGCGCGAGCCTGTACGTGCTGTGCTGTGAGGGGGAGGAGCTAACTGACGGTGCTGAGCAGCAATAAGATACCGCcgcgagaagagagagagagaggGTGGCTAAAATTGATGCTTCATCTACttgtaaaatacagaaaacagaagATTTGGGGAAAAGTGcagattatcattattattgatGATGACCTCCACTGGGAAAACCTCTAATGGACGCCTTTCTCACTCTACCATAATGCCTGATCTACTACGTCTTACCGGTGAGCCGTAAAGGTCTCCCATATACAGACGCTCATAAACAGTAAGAACCTGATTTGCTCATGCTGGTTTGGCTGGTCTGTCCAACTTCCTACTATGAAGAGGCCCAAGCAGCAGTCCCAACCCTTTAGCTTCCTCAGCTTTTTCAGCCGCAAGCCCAAATCGGACCCGAAGACTGAGAAACCGACCACGCCGAGCCGAGAAGAGGTGGCCATTACCCTAACACCCAACGAGCAGGAGCCGGCTGAACAGGATCCGAGCCTTAGTGAGCGAGAGGATGGTGGAGAGAGTGGTGAAGGGGGTCTGGCGAAGGGCGAAGTGGTCGGGGGCGAGCAGCAGGTGGCAGAGTGCGGTAGCAGCGGCTCCACAGGGGTCCTGTCTCTGTCTTCATCCAGCCAGGAGCAGCTGTTGGAGCACCTGGTGGAGTGTCCCTTGTGTCTGCTAAGCCAGCCTCGCGGTCACTTCCCCCGCTTGTCCTCCTGCCCGCACCGAGCCTGCGCTGACTGCCTGCGCCAGTACCTGCGCATTGAGATCTCGGAGAGCCGAGTGGGCATCGCCTGCCCGCAGTGCCCTGAGGCTCTGGCCCCGCCGGACGTCCGAGCAATCCTGGACGATGGTGCCCTGCTGGAGCGCTTTGAGGAGTTCCAGCTGCGCCGCTTTCTTGCCTCTGACCCCGACACACGCTGGTGCCCCGCGCCGGACTGCAGTTATGCAGTGATCGCCTATGGCTGTGCGGAGTGTCCTAAGCTGAGCTGCGGTCGAGAGGGCTGCGACACTGAATTCTGCTACCACTGCCGTCAGCTCTGGCACCCTGACCAGACGTGTGACCAGGCCAGGAGACAGCGCGCTCGCCACACCTCTGGTGCTGATGCCTCCACACTGTATGTCTTCAGCGAGGAACCAGGAGGAGatGCGGAGGAGATTAAAGCATGTCCTCGCTGTGGTGCCTATATCATGAAGACCAACGATGGCAGCTGTAACCGGATGAACTGCACAGTGTGTGCTTGTCAGTTTTGCTGGCTGTGTATGCAGGAGATCACAGACGTGCACTACCTCAGTCCCTCAGGCTGCACTTTCTGGGGAAAGAAGCCGTGGTCCCAGACGCGGAAGGTCCTGTGGCAGGTGGGGATGCTGCTGGGGGCTCCAGTAGTGATCTCACTCATAGCAGGCATTGCCATACCAGTCATCATAGTGGGCATCCCTATATACATGGGCCGCAAGGTCCACAGTCGCTGTAAGAAAAACAATATCTCAGGAAGTAAACATTACTTGACAGTGGCCAGCGGGGTCATGACATCAGTGTTTGTGTCTCCAGTCATAGCGGCCACTACTGTGgCGGTCGGAGTGCCTCTGATGTTGACTTATGTTTACGGAGTGGTTCCTATGTCGCTGTGTCGGAATGGCTGGTGCAGGCCTCAGACCGAACCCCCTGAAACACGCAAGATCCAGCTGGAGGACCTGGCTACTTATCTTTTGTTTTCTCATGTAGTCAGTGACCACTGGACCGGAGAGCCCAAGCCCCCTGTGAATGATGCCGCTGTCCAGGAAGTGAGTGTGAATATGGAAGAAGTGGCAGCGCTGCCCAGTACCAGCGACGTCCTGTCACAGCCCGAGGCCTCGCCTGAGTCGCAGGATGATGAACAGGCAGACAGCGCCGAGCAAGATGACCagtctgatgatgatgatgaggatgaggatgatgataatgatggaGATGCAGTTGAAAATGGTGCCTTCAGCGGCACACAGACTTTTGCCTTGAGGGAGGGGACCAACATTGAGGTGCGGGTGGAGATCGAGGCTCAGCCGAGGAGAGGCCGGCAACCCAGCCTCAGCAGCGTCCTCTCCAGCAGGAGCCTGTCGTCAGAGTCCCTGCATCAGTCCAACGAACCTCTCTGTGCCTCAAAACATCCAGCGGGCAGAGACCCCCCGCCACTCACCGAGACCGACAGCGTCTGAGCTGCATCCAGGCCACACCCGCTTCCACCGCCCACTGCACCGCCCACCAGCCGCTTCTAGCCTCTGCCTCTTAACGCAGAGTCAGCGACATGGAGACCAATGGAGTGAGAGATCAGGAGAGGAagcgagaggaagagagagagagggggcaggagggagaaagagttCTGGACAACAGTAAAAGAGGGCATGGAGACTTGCATCCCGGGCAGCTGTCGAAAACGCCGCGAAGAGGATTACTGACTATACTACAAACTAAAATGACAGAGAGCATGTTCGTCAAGTAGTCTTACGGTCATtagctcttttttttactgtgttgcAATGAAGAGCCTATTGCCTACCCGGATGGTGTTCTTttctaatttattcatttagccCTTCTTCTAGCTCCAGTATATACCCTTGTACTTAGCAGCTATATGATTTCTCccctctaaataacaataaacggAAGAAACGACAGCATGATTTCCTCTGCAGGGCTCTGTGGCCTAGTTTGACTGGCAACTGTACACTGCCACAGTGTGGAATCCAATGCTTCCTTGGCTGGGGATTGTAGTGCTACAGGCTACTGTGCAACAGGGTATCTAGGGCTTTTCCTTATGGGGTAAATTCACTTAAATTATGCAAGTTCTTACATAACACCAGGCCATGCCCCATTTGAAGTGGGATGCAGTGAAAATAATGAGACTCAGATCTGGATTTAGCCCTCATTCATTAGTGTTCCCTGTGTGTAGCAATTAGCCAATAAGCCCTGTGATTCTAACAGCGCAGTTCAAAAGAACTTGGCCAATATTTGCATTGTCCATAACAGTGTATAAGACGACCACAAACTGCTTACTGATGTTTATTTCAACCTGCGTTGTTTGATAGCGTTAGTAGTGGGCCACCATGTCCATGTCCAACTGACTGAACCAACGAATTAGGCTCAGAATAGAAAACTAGATTGGGCACCTTGTTTACATGGTTATCAATAGTTTGGTGACTTAAGATCTTAAGAAGATTGATGTGTTCTACAGTTCTACAGTTATCTGAACTGATAACGCTGATTtgggtttggaatgatttgGACATGGATTCATCTGTTTTTAACTGGTGGAGCTAATAAAGATAATAGtctctccatccatcccatCCACAGTATATGGAGGCGTGAAGCCAAAGTGATGCTCCTTACAGAAAACACTCTTTCCGATCTGCTCTTTGTGAGTCAGCACTAATCGAAAACCCTCTCCTCAGCATGTCATCTGTTTCAGGTCTCTGCTTTCCTGAAAAACAGCCAGTGGataagaaatgaaaaatgaaatttgACATTTGACATCAATTATTTGATGTCTGTCGATACACACCCACAGATCCAAAGTTACTGAAATGTGAAATGGCCTGGAAAATGAAAtggtatataaataaacattctAAGTCAAAGACGAGGCTTA
>XM_007256643.3
TCCGCGCGGGCGCGAGCCTGTACGTGCTGTGCTGTGAGGGGGAGGAGCTAACTGACGGTGCTGAGCAGCAATAAGATACCGCcgcgagaagagagagagagaggGTGGCTAAAATTGATGCTTCATCTACttgtaaaatacagaaaacagaagATTTGGGGAAAAGTGcagattatcattattattgatGATGACCTCCACTGGGAAAACCTCTAATGGACGCCTTTCTCACTCTACCATAATGCCTGATCTACTACGTCTTACCGGTGAGCCGTAAAGGTCTCCCATATACAGACGCTCATAAACAGTAAGAACCTGATTTGCTCATGCTGGTTTGGCTGGTCTGTCCAACTTCCTACTATGAAGAGGCCCAAGCAGCAGTCCCAACCCTTTAGCTTCCTCAGCTTTTTCAGCCGCAAGCCCAAATCGGACCCGAAGACTGAGAAACCGACCACGCCGAGCCGAGAAGAGGTGGCCATTACCCTAACACCCAACGAGCAGGAGCCGGCTGAACAGGATCCGAGCCTTAGTGAGCGAGAGGATGGTGGAGAGAGTGGTGAAGGGGGTCTGGCGAAGGGCGAAGTGGTCGGGGGCGAGCAGCAGGTGGCAGAGTGCGGTAGCAGCGGCTCCACAGGGGTCCTGTCTCTGTCTTCATCCAGCCAGGAGCAGCTGTTGGAGCACCTGGTGGAGTGTCCCTTGTGTCTGCTAAGCCAGCCTCGCGGTCACTTCCCCCGCTTGTCCTCCTGCCCGCACCGAGCCTGCGCTGACTGCCTGCGCCAGTACCTGCGCATTGAGATCTCGGAGAGCCGAGTGGGCATCGCCTGCCCGCAGTGCCCTGAGGCTCTGGCCCCGCCGGACGTCCGAGCAATCCTGGACGATGGTGCCCTGCTGGAGCGCTTTGAGGAGTTCCAGCTGCGCCGCTTTCTTGCCTCTGACCCCGACACACGCTGGTGCCCCGCGCCGGACTGCAGTTATGCAGTGATCGCCTATGGCTGTGCGGAGTGTCCTAAGCTGAGCTGCGGTCGAGAGGGCTGCGACACTGAATTCTGCTACCACTGCCGTCAGCTCTGGCACCCTGACCAGACGTGTGACCAGGCCAGGAGACAGCGCGCTCGCCACACCTCTGGTGCTGATGCCTCCACACTGTATGTCTTCAGCGAGGAACCAGGAGGAGatGCGGAGGAGATTAAAGCATGTCCTCGCTGTGGTGCCTATATCATGAAGACCAACGATGGCAGCTGTAACCGGATGAACTGCACAGTGTGTGCTTGTCAGTTTTGCTGGCTGTGTATGCAGGAGATCACAGACGTGCACTACCTCAGTCCCTCAGGCTGCACTTTCTGGGGAAAGAAGCCGTGGTCCCAGACGCGGAAGGTCCTGTGGCAGGTGGGGATGCTGCTGGGGGCTCCAGTAGTGATCTCACTCATAGCAGGCATTGCCATACCAGTCATCATAGTGGGCATCCCTATATACATGGGCCGCAAGGTCCACAGTCGCTGTAAGAAAAACAATATCTCAGGAAGTAAACATTACTTGACAGTGGCCAGCGGGGTCATGACATCAGTGTTTGTGTCTCCAGTCATAGCGGCCACTACTGTGgCGGTCGGAGTGCCTCTGATGTTGACTTATGTTTACGGAGTGGTTCCTATGTCGCTGTGTCGGAATGGCTGGTGCAGGCCTCAGACCGAACCCCCTGAAACACGCAAGATCCAGCTGGAGGACCTGGCTACTTTCAGTGACCACTGGACCGGAGAGCCCAAGCCCCCTGTGAATGATGCCGCTGTCCAGGAAGTGAGTGTGAATATGGAAGAAGTGGCAGCGCTGCCCAGTACCAGCGACGTCCTGTCACAGCCCGAGGCCTCGCCTGAGTCGCAGGATGATGAACAGGCAGACAGCGCCGAGCAAGATGACCagtctgatgatgatgatgaggatgaggatgatgataatgatggaGATGCAGTTGAAAATGGTGCCTTCAGCGGCACACAGACTTTTGCCTTGAGGGAGGGGACCAACATTGAGGTGCGGGTGGAGATCGAGGCTCAGCCGAGGAGAGGCCGGCAACCCAGCCTCAGCAGCGTCCTCTCCAGCAGGAGCCTGTCGTCAGAGTCCCTGCATCAGTCCAACGAACCTCTCTGTGCCTCAAAACATCCAGCGGGCAGAGACCCCCCGCCACTCACCGAGACCGACAGCGTCTGAGCTGCATCCAGGCCACACCCGCTTCCACCGCCCACTGCACCGCCCACCAGCCGCTTCTAGCCTCTGCCTCTTAACGCAGAGTCAGCGACATGGAGACCAATGGAGTGAGAGATCAGGAGAGGAagcgagaggaagagagagagagggggcaggagggagaaagagttCTGGACAACAGTAAAAGAGGGCATGGAGACTTGCATCCCGGGCAGCTGTCGAAAACGCCGCGAAGAGGATTACTGACTATACTACAAACTAAAATGACAGAGAGCATGTTCGTCAAGTAGTCTTACGGTCATtagctcttttttttactgtgttgcAATGAAGAGCCTATTGCCTACCCGGATGGTGTTCTTttctaatttattcatttagccCTTCTTCTAGCTCCAGTATATACCCTTGTACTTAGCAGCTATATGATTTCTCccctctaaataacaataaacggAAGAAACGACAGCATGATTTCCTCTGCAGGGCTCTGTGGCCTAGTTTGACTGGCAACTGTACACTGCCACAGTGTGGAATCCAATGCTTCCTTGGCTGGGGATTGTAGTGCTACAGGCTACTGTGCAACAGGGTATCTAGGGCTTTTCCTTATGGGGTAAATTCACTTAAATTATGCAAGTTCTTACATAACACCAGGCCATGCCCCATTTGAAGTGGGATGCAGTGAAAATAATGAGACTCAGATCTGGATTTAGCCCTCATTCATTAGTGTTCCCTGTGTGTAGCAATTAGCCAATAAGCCCTGTGATTCTAACAGCGCAGTTCAAAAGAACTTGGCCAATATTTGCATTGTCCATAACAGTGTATAAGACGACCACAAACTGCTTACTGATGTTTATTTCAACCTGCGTTGTTTGATAGCGTTAGTAGTGGGCCACCATGTCCATGTCCAACTGACTGAACCAACGAATTAGGCTCAGAATAGAAAACTAGATTGGGCACCTTGTTTACATGGTTATCAATAGTTTGGTGACTTAAGATCTTAAGAAGATTGATGTGTTCTACAGTTCTACAGTTATCTGAACTGATAACGCTGATTtgggtttggaatgatttgGACATGGATTCATCTGTTTTTAACTGGTGGAGCTAATAAAGATAATAGtctctccatccatcccatCCACAGTATATGGAGGCGTGAAGCCAAAGTGATGCTCCTTACAGAAAACACTCTTTCCGATCTGCTCTTTGTGAGTCAGCACTAATCGAAAACCCTCTCCTCAGCATGTCATCTGTTTCAGGTCTCTGCTTTCCTGAAAAACAGCCAGTGGataagaaatgaaaaatgaaatttgACATTTGACATCAATTATTTGATGTCTGTCGATACACACCCACAGATCCAAAGTTACTGAAATGTGAAATGGCCTGGAAAATGAAAtggtatataaataaacattctAAGTCAAAGACGAGGCTTA

Function

symbol description
si:ch211-278j3.3 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF19B-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256642.3 True 3662 mRNA 0.52 10 59445511 59486743
XM_007256643.3 False 3641 mRNA 0.52 10 59445511 59486743

Neighbor

gene id symbol gene type direction distance location
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding downstream 11198 59358827 ~ 59434313 (-)
ccm2 ccm2 coding downstream 448749 58976662 ~ 58996762 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding downstream 492626 58947653 ~ 58952885 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding downstream 503314 58934892 ~ 58942197 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 851585 58582728 ~ 58593926 (-)
eif2b4 eif2b4 coding upstream 76086 59562829 ~ 59573611 (-)
LOC103030505 LOC103030505,LOC108434978 coding upstream 112677 59599420 ~ 59608991 (-)
LOC107197813 NA coding upstream 213291 59700034 ~ 59704083 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding upstream 305833 59792576 ~ 59830891 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding upstream 395397 59882140 ~ 60059600 (-)
G29480 NA non-coding downstream 2509 59442779 ~ 59443002 (-)
G29417 NA non-coding downstream 119799 59324993 ~ 59325712 (-)
G29393 NA non-coding downstream 201676 59236497 ~ 59243835 (-)
G29370 NA non-coding downstream 311839 59133411 ~ 59133672 (-)
G29369 NA non-coding downstream 313374 59131541 ~ 59132137 (-)
G29492 NA non-coding upstream 67588 59554331 ~ 59559664 (-)
G29494 NA non-coding upstream 87585 59574328 ~ 59574536 (-)
LOC111190079 NA non-coding upstream 89495 59576238 ~ 59578395 (-)
G29509 NA non-coding upstream 120432 59607175 ~ 59607846 (-)
G29559 NA non-coding upstream 365312 59852055 ~ 59852468 (-)
G29478 NA other downstream 7213 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 359625 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 510722 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1270807 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 1450035 57991641 ~ 57995476 (-)
snx17 snx17 other upstream 20183 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 662654 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 864529 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 882303 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1806133 61292876 ~ 61364878 (-)

Expression


Co-expression Network