LOC103030505 (LOC103030505,LOC108434978)


Basic Information

Item Value
gene id LOC103030505
gene name LOC103030505,LOC108434978
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59599420 ~ 59608991 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256653.3
ctgctgctgctgctgctgctgtttgattAGCGCTGCTGTGAAGCTCTATTGCCGGATTCGGATTTACAGCAGAAAAACGCTTAAAATGGCTAAAAAGGCGCAGAAATCACAAAAGAAACCACACTTCACTGTATACATTGACAATTCAATGTGATCAATGGAAAGCTAATGGCAATCAGGAACTCTAAAGCCCAGGGTTTTTCTAGCAGCGGTGTCACAGATTAAAACGGCTTAAAGGCTTTGGAcctaaaacaaagagaaaccacaggactgttaaaaaaatctaacttgCAAAACATttgaatgactatttttatCAAGTTGATGGAGCAGAAAGCCTTAACAAAAGTCTGAGCAACAGTATATTTTGTACGAATATAAGTTAAGTGAGCACGAAAATATTTGGGGAAATGTAGTACCATGTGTGGACAACAGAAGATGTTGCCAGTCAAAGCATCACGTTTTACTGATCTACTTGATatcaagataaaataaataacaataataataacaatgcagAAACCAACCCACTGACTGTCACTGCCAACCCCGGGTTTGAGGAGGAGCCATGGGTTGTGGAGGCTCTAGGACTGATGCTTTGGAGCCGCGTTACTTGGAGAGCTGGACCAAAGAAACAGAATCCACCTGGCTCACCAGCACAGACGCTGACATACCCCTGTCCTCGATCCACAGCATCCCCTCAGAGAACTCGTCCGAGGTGGGCTATGGAGCTGAAAAAACAGCCAGTCCTGATATCTTTGATGACGGCCTGCCATCTCCTGCTCAGGCGTATCTGAAAGTGTGTTCTGCCATGTCTGAGGCCAGCCTCAGTGACGTGAAAAGCAGCAGTACACCTTCCATACTGACCTCACAGCAAGAAGAGCTGTCTTCACCGAGCTCAACAGTGCAGAGGAGAAGTGTCTTGTGCACTGAGGAAATTACCAAGTGGCAAGACAACAGAATGTCCACCAAGCAGGTGACCATCACAGTAACTCAGAGCATCCGTCAGGTGGACAAGAGTGGAAAGATCAAGGAGAAGTCCCACACAACATGCGAGGTCATGAAACCTCGGGATAGCTTGAAGGAAGCAGCAGTAGAAGCTGTGCTGAAATGAGAACAATAACCCAAAGGAGGCACCTCAAACGGAGTGGAGTAGTAGGACACTTTAGATCCTCAGCcctgtgaaaactgtgatgaacAGCAAGCACTGTGGACCAAAGAGCAGAAGGCAGGTCCGATCTGAAGCACACAGGCCTGTGTTTGGACATGCAGCCCCTGCCTGATGGACTTTATTAGGATTTATTTTGAGTTCAGTGGTCTAAAGGTTTGATTCGTAATTCATATTTTCACTTATAATTCTATGTATGTTGCTACTGCTGTACTGTAATAGTGGTAGCTGACTATTTGAAGTGATCttgaaattttaaaatgttttaaacttctAGGTTTTTTTGAAATTGTAACATACAGGGTACTAGGGTTGGtgtgatatggtaaaaaaaatattattgtatcatgatatttaaagacatCTTGCTGCAGACATTGTATCAGATTCTTAGAAAACAGCTAATCAATATACCAcagttattttaaatacagtgatTTTAGTACAAAGAGTGCTCCACTTCATCCCATTAAACAGGATTAATTCCTCTTTCTGTAATGAAAAGTGAAGTTGGTCAGTGTTTTTAAGAACTGATAACctattatttttcataataatacatttatcatgatacaataaaatattgtcatattgccaagccCTACAGGGCACATATTGGACAATCAAAGAGGcaagaaaaacaaaagtgaCCTCTAAAGTTACTTCAATATTAACTGGAGTATCCTCTTAATAAAGAGTATCTTTGAACGGTTTGATAATGTATTCATTATCATCATAAAGGTCATCTCAGTTATCAATCCACAGTTACAAGGTCTACTGGCTTTATTCATGAACCAATAGAACAGGGTATATTGTAGCACCGTTCTGTGCTAAGAGtactattgtttgttttattcataaatTCTGTTTAACATAAATTCTATTTTCATGTTAAGCTAAGTTTAgtaactttttgttttttttaaatgaccaaTTCATGTTTTGAATGTTGTGTTAGAAATATCCAAAGGTATGTGTTTTACACTATCAGTATTCCTTTTTGCTATGCTTATTACAGATCATGTGCATTCATCATCTCAGAGAGAAACCTCTAACACTAACCTTTGTCACTAAGATGCCTCAAATCAGGTTACCTGACCTTCCCTTAAATTCAGTATGTGTCTATTCATAATTGTGAATGATAGTTTTAAAATCAACCTGAAACTATGAATGCTTCACAGGAAAGAATCTCTagaatacacttttaaaagaagttttttgtctgtttaaattattttgtgctGAGTAAAATTAAACAAGTCTAAATTGTCCAATAAAAAGatttgaaaaatgaaa

Function

NR:

description
brain and acute leukemia cytoplasmic protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256653.3 True 2464 mRNA 0.38 4 59599420 59608991

Neighbor

gene id symbol gene type direction distance location
eif2b4 eif2b4 coding downstream 25809 59562829 ~ 59573611 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding downstream 112677 59445511 ~ 59486743 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding downstream 165107 59358827 ~ 59434313 (-)
ccm2 ccm2 coding downstream 602658 58976662 ~ 58996762 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding downstream 646535 58947653 ~ 58952885 (-)
LOC107197813 NA coding upstream 91043 59700034 ~ 59704083 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding upstream 183585 59792576 ~ 59830891 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding upstream 273149 59882140 ~ 60059600 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding upstream 488497 60097488 ~ 60123478 (-)
LOC103033561 NA coding upstream 519056 60128047 ~ 60145920 (-)
LOC111190079 NA non-coding downstream 21025 59576238 ~ 59578395 (-)
G29494 NA non-coding downstream 24884 59574328 ~ 59574536 (-)
G29492 NA non-coding downstream 39756 59554331 ~ 59559664 (-)
G29480 NA non-coding downstream 156418 59442779 ~ 59443002 (-)
G29417 NA non-coding downstream 273708 59324993 ~ 59325712 (-)
G29559 NA non-coding upstream 243064 59852055 ~ 59852468 (-)
G29563 NA non-coding upstream 249075 59858066 ~ 59858339 (-)
G29608 NA non-coding upstream 465081 60074072 ~ 60091759 (-)
G29681 NA non-coding upstream 775012 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 778989 60387980 ~ 60388361 (-)
snx17 snx17 other downstream 46510 59506926 ~ 59552910 (-)
G29478 NA other downstream 161122 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 513534 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 664631 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1424716 58159207 ~ 58174704 (-)
LOC103034188 LOC108434976 other upstream 540406 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 742281 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 760055 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1683885 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 2222850 61831841 ~ 61890729 (-)

Expression


Co-expression Network