LOC103031133 (chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496)


Basic Information

Item Value
gene id LOC103031133
gene name chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59767382 ~ 59786661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256654.3
GGCTGAACCTCCTCACAAGTGCGTGCGAGCGCGCAGCTCAAGGACGCGAGCCGGAGCACTTCATCCTGCAAACGTGTGCGTGCACGAGCCTGGACCACAACCGTTACCATCATCTCCAGCATCCCTCTTCCCCTCCTGCCTGTGATGAAGTGAATCAGCCGGCTGTATcagctgagttactgagttagAGTCTTGTAAAGTGTTGGAGTGAACAGGTGCGCAGAGCCGGCGGTGCGTCTTTACGCGCAGATCactgacagacagagagacagacagacacacagagagagaggaagatgcGCGCAGAGATGAGCAGGACAGCAGGCGAGGAGGAGTTTGGAGATGGGTGCCAGTAACTGAACCCTGAAGCCTTCATTAACACGATCATCTGCAGGAGATCAGACTGTGCTACAATGATCCAAACTCAACACCGCACGAGTTAACTGCGCGCGCGCGCTGGAGGATGGAGCTGATCCCAGCCTCTCTCAGCTGAAGCTGCAGGCGGGATGGAGCGCTCCGGGATCAGCCCGCGGAGGATGAGGAGCACCCTGCTCTTCATCATGCTCTGGAAGTCCGTGTCCTGTTATGAGAAGACTCATTCACATGCTGAGGATGAACTCTTCAAAAAGCTTTTCATTGGTTACAACAAGTGGTCCCGGCCTGTCCCAAACACCTCAGATGTCGTCATTGTTAAGTTTGGCTTGTCCATCGCCCAGCTGATTGATGTGGATGAGAAGAACCAGATGATGACGACCAATGTCTGGCTAAAGCAAGAGTGGAATGACTATAAACTAAGATGGAAGCCTTCTGATTACGACAATGTGACGTCCATCAGGGTGCCATCAGAGCTCATCTGGGTGCCAGACATTGTGTTGTACAACAATGCCGATGGGGAGTTTGCCGTGACCCACATGACCAAAGCCCACCTCTTCTACACAGGGAAAGTGCGCTGGGTTCCTCCAGCCATCTACAAGAGCTCCTGCAGCATCGATGTCACCTTCTTCCCCTTCGACCAGCAGAACTGCAAGATGAAGTTCGGCTCGTGGACATACGACAAGGCCAAGATTGACCTGGAGCGTTTGGAGACAATGGTGGACCTGAAGGACTACTGGGAGAGCGGTGAGTGGGCCATCATCAACGCTGTGGGCACCTACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCGGACATCACGTACTTCTTCATCATCCGGCGTCTTCCTCTATTCTACACCATCAACCTCATCATCCCCTGCCTGCTGATCTCCTGCCTGACCGTGCTGGTCTTCTACCTGCCCTCAGACTGTGGCGAGAAGATCACGCTCTGCATCTCTGTGCTCCTGTCACTCACTGTCTTCCTCCTGCTCATCACAGAGATCATACCGTCCACTTCACTGGTCATTCCGCTCATCGGAGAGTATCTTCTGTTCACCATGATCTTCGTCACTCTCTCCATCATCATCACCGTGTTCGTTCTGAACGTTCACCACCGCTCCCCAGGCACCCACGAGATGCCCCACTGGGTACATGCCGTCTTCCTGGATCTCATCCCCCGCTGGCTTTTCATGCGCAGGCCGGCACCCGACAGCCGCCGCAGGCAGAGGCTGCTGCTTCTGCAACAGGGTCAAAGGTCACGGCCGTCCTGCCTAAGCACCTCAGCCAGCTGGTTCAAGGAGGATACAAGGACCTGCTGCTACAATGAACTGGAGCTAGGAACGCTTTCCTCCGCTTTCTCACTCTCCTTCCGTCCTCCCTCTCCCCGGCCCCCTGGATCTACCCCTCCAACCCTGCAAAAGCATGGAGCTCCTCCTCGGCAGGAGATAGGCATGGCCTGCCTGCCAAACTCCAGGCATTCAGGTGCTAGAATAAACCACACGAATCGGCCCACTGAAGAAGACCAGAGGTCCCCTCTGTCCCCAAGCATCATGCAGGCACTGGAGGGGGTTCACTACATAGCGGACCACTTAAGGGCAGAGGACGCCGACTTCAGCGTTAAGGAGGACTGGAAGTATGTTGCCATGGTGATCGATCGGATCTTCCTGTGGATGTTCATTATAGTGTGTCTGCTGGGCACCATCGGCCTGTTCCTTCCCCCCTGGCTGGCTGGCATGATCTAGAGCCTGGcttcttacacactcacacatgtaCGGGCACTGTGGGGACACTTATCAGCAGAAGCGGTGAAGGGACGCTACATATAGAAACACACAGTGCTCAGTGAATGAAGAACTGTCTGCGGGGAACAGCAGCTGCTGCGCAAAAGCCCAGTCAccaaacctctctctctctgaatgtaAAACCTTGCAGTGAATACTGTTTAATAAAATTTGGCACcttaaaaaag

Function

symbol description
chrna2b Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in interpeduncular nucleus medulla oblongata; interpeduncular nucleus tegmentum; neurons; and spinal cord. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy 4. Orthologous to human CHRNA2 (cholinergic receptor nicotinic alpha 2 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like

GO: NA

KEGG:

id description
K04804 CHRNA2; nicotinic acetylcholine receptor alpha-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256654.3 True 2350 mRNA 0.54 6 59767382 59786661

Neighbor

gene id symbol gene type direction distance location
LOC103031439 LOC108434977 coding upstream 2309 59753476 ~ 59765073 (+)
LOC103030186 LOC108435004 coding upstream 263860 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 414257 59297681 ~ 59353125 (+)
LOC103025639 blk,LOC108435007,LOC108258139,LOC107589086,LOC107684815,LOC107746144,LOC107701472,LOC107561930 coding upstream 491848 59251973 ~ 59275534 (+)
LOC111194377 NA coding upstream 523982 59239996 ~ 59243400 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding downstream 274437 60061098 ~ 60091808 (+)
LOC103035162 LOC108434989,LOC108258176 coding downstream 479176 60265837 ~ 60273289 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 493178 60279839 ~ 60281890 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 608917 60395578 ~ 60462048 (+)
LOC111190190 NA coding downstream 644200 60430861 ~ 60443507 (+)
G29526 NA non-coding upstream 63272 59700063 ~ 59704110 (+)
G29516 NA non-coding upstream 134914 59632119 ~ 59632468 (+)
G29515 NA non-coding upstream 135475 59631704 ~ 59631907 (+)
G29448 NA non-coding upstream 247410 59507008 ~ 59519972 (+)
G29432 NA non-coding upstream 331007 59436160 ~ 59436375 (+)
G29558 NA non-coding downstream 65410 59852071 ~ 59852524 (+)
G29560 NA non-coding downstream 70580 59857241 ~ 59857582 (+)
G29567 NA non-coding downstream 101195 59887856 ~ 59985113 (+)
G29580 NA non-coding downstream 309494 60096155 ~ 60097909 (+)
G29591 LOC108434993 non-coding downstream 341400 60128061 ~ 60131474 (+)
nme6 nme6 other upstream 169050 59586709 ~ 59598332 (+)
atraid atraid other upstream 207620 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 538542 59221266 ~ 59228840 (+)
G29382 NA other upstream 546346 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 655067 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 733681 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 2139419 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 3035082 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 3139357 62926018 ~ 62931133 (+)
G30362 NA other downstream 3549073 63335734 ~ 63345693 (+)

Expression


Co-expression Network