LOC103031439 (LOC108434977)


Basic Information

Item Value
gene id LOC103031439
gene name LOC108434977
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59753476 ~ 59765073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256655.3
GCAGACAGAGGCAGAAAGTTTTCCCCCAGCCAACCCCACACGCTTTCCTGTTGGAGCGCGAGCAATGGAGCTGGAGATGGACTAAGTGTTTGTGCTCTACCTCTAAGCCTCTGAATGGCAACTTGAGGATCTGAGCCTGTAAAATTCGGGGCCACTCGGGACgttttaacttgttttaaaGGCTGAAAGATTTAGGCCAGCATGAGGCAGTACTGGACTTTGGGTACATTGCTATTCATAGCCTCGCTGATTGCAGTCCACCACTGCCAGAGTGGTGAGGAAGGAGACTGGGGATCAGGCAGCGCTCCAGAGGTCGTGTTCACCAATGCGTCCATTCCTATTCCGCACACAATCGGGGATGATCCGGCCAGGCCTGGGAGCGCAGACTGGACTAAGCCTATTTTCCAGGCCATTCCAGAGATGGAAGCAGATGGCTGCTCCGTCCACTTCCACACCGGTCAGGCTTTGTCCAGGCGATTACGAGCGAGCAGGGACGAGGTGGCTTATCTGAAGGCTCTCCAGCACGGGAACCAGGCCGTGGTGGAGAATTTAGTGCAGTTCGTCGGAGCAGAGTTGGGGAACCTGCGCTATCAGGATATTATCCAGGAGAATGTTGCTGGAATCAGGGAGGATCTCAACAGCTCTGAGGGAGTGGTGAAGAAAGCAGTGGATGAGCTGGAAAATCAACTAGAGGGGGACCTCCTACAAGCCCTGTCTGGAATTCAGAAAATCAAAGAGGAGTCTCTTGCCTTTGAACGGATGCTGCGAGCCACAGCAGACATTGCCAGCCGGCTGGAGATTTCCTCACGGACCCTGAACACAGAGCTGACGGAGCAGCTCAGAAAGAGCATGAGTGCTCCCAAATAAGAAAGCACATGACAGGAAGACTGCCAgttcagaggaaaaaaaagcattactgTGTTATTTGACAGTTGTAACCTTATACATTCTTAAAAATGAAAGTACCAGGAGGAGTTCTTTGGAGTAAGGCTGTAGAAGAACCCCTGCTGATCTACAGAGGATGCTTTCAAGGAGCCGTTCAGATGTTGGAGTGTGTAGAACTTTCTAAAGACATTTAGAACCTTTTTAAGAGGGTTTTGGTTTAGAGACAAATGGCATGAATGGTGCCATTTTATTTTCATAGAACAGAGAAGCTTTAATGAAGGAAATGTACGTTACTGCAGCACAGCTCATAGAGATATGGCAAGCTTATGCtcacagagagaagagagagagagagagagagagagaaagaaacaggaaCAACAAGATATCATGAGTTAGTTAGGagatttaatctatattttaacataaataaaaaataatctactttctgaactctttctgaGCAGTAGTGACGATGTGTTTACATCACTAATTAAATCTGCTAATACGTTACTAGgcataaaaaaagtattacttTGGACATTGTAAAGTTTTGGGGGATTtttttcacacatacacacactttctctttagCTTTATGGAAATGTAGTTATTCTATAGTATCACACAGGAATCCTTTGTACTACACTGTTAAATGTATATGGTTCTTGAGGAATTTAAGGCTTCTTTAGTTTGAAACTGGGGATGAACCCATTAAGGTGCTTTAAGGAACCTTCAGGAAACatttttcttctaaaaacaaaacttttctTGAAAGAGCTTTAAGGGGTTTCTCCTTAAAAGTTCTTCGAGGCTGTGCAATAAGTGCTGTGCAAATTTCCCACAATGCTAAAAGCTACAGATTGTGTCCAAGTTTGTGATTTGTGATGAATCTTTGTTTGAAAACTCTCCTGGAACAGGAGAAACTCTCTGTACATTTGCTCTGCAGTCTCGCGCAGGCAGCTGAGTGTTGTGGTCTGGCTGTCTTGGTGCTAGGGTGCAGATGGAGAGCAGACAGCTTGGGCCCCTCACTCAGCACAGAGACACCAATGTGAAGAAAAGGGAAAGGGCCTTGATGTCATAGAAAAGTAAATGAGGTCTCATTTTGAGGCCAAAGCTGGAAGGAATCTCGTCATTACCTTGCGATTACTGTTTAATTCCTATTGTTAATCAGAATGACAATGTGTAAATAGTGAGTTATGTAGAAGTTATTCAGCTGAGGATATATAttgtgtggtatctgcatgTCTATATAAACAGAGGATAACTTGCGCTTGGATTTCATGCATGGCAACCTAGCTTTGATCTCAGTGGTGTGTTTGGGCATGATGTAGCtcataaagcatttaaataaagacCTAATTTAATCAATTCA
>XM_022663876.1
GCAGACAGAGGCAGAAAGTTTTCCCCCAGCCAACCCCACACGCTTTCCTGTTGGAGCGCGAGCAATGGAGCTGGAGATGGACTAAGTGTTTGTGCTCTACCTCTAAGCCTCTGAATGGCAACTTGAGGATCTGAGCCTGTAAAATTCGGGGCCACTCGGGACgttttaacttgttttaaaGGCTGAAAGATTTAGCATGAGGCAGTACTGGACTTTGGGTACATTGCTATTCATAGCCTCGCTGATTGCAGTCCACCACTGCCAGAGTGGTGAGGAAGGAGACTGGGGATCAGGCAGCGCTCCAGAGGTCGTGTTCACCAATGCGTCCATTCCTATTCCGCACACAATCGGGGATGATCCGGCCAGGCCTGGGAGCGCAGACTGGACTAAGCCTATTTTCCAGGCCATTCCAGAGATGGAAGCAGATGGCTGCTCCGTCCACTTCCACACCGGTCAGGCTTTGTCCAGGCGATTACGAGCGAGCAGGGACGAGGTGGCTTATCTGAAGGCTCTCCAGCACGGGAACCAGGCCGTGGTGGAGAATTTAGTGCAGTTCGTCGGAGCAGAGTTGGGGAACCTGCGCTATCAGGATATTATCCAGGAGAATGTTGCTGGAATCAGGGAGGATCTCAACAGCTCTGAGGGAGTGGTGAAGAAAGCAGTGGATGAGCTGGAAAATCAACTAGAGGGGGACCTCCTACAAGCCCTGTCTGGAATTCAGAAAATCAAAGAGGAGTCTCTTGCCTTTGAACGGATGCTGCGAGCCACAGCAGACATTGCCAGCCGGCTGGAGATTTCCTCACGGACCCTGAACACAGAGCTGACGGAGCAGCTCAGAAAGAGCATGAGTGCTCCCAAATAAGAAAGCACATGACAGGAAGACTGCCAgttcagaggaaaaaaaagcattactgTGTTATTTGACAGTTGTAACCTTATACATTCTTAAAAATGAAAGTACCAGGAGGAGTTCTTTGGAGTAAGGCTGTAGAAGAACCCCTGCTGATCTACAGAGGATGCTTTCAAGGAGCCGTTCAGATGTTGGAGTGTGTAGAACTTTCTAAAGACATTTAGAACCTTTTTAAGAGGGTTTTGGTTTAGAGACAAATGGCATGAATGGTGCCATTTTATTTTCATAGAACAGAGAAGCTTTAATGAAGGAAATGTACGTTACTGCAGCACAGCTCATAGAGATATGGCAAGCTTATGCtcacagagagaagagagagagagagagagagagagaaagaaacaggaaCAACAAGATATCATGAGTTAGTTAGGagatttaatctatattttaacataaataaaaaataatctactttctgaactctttctgaGCAGTAGTGACGATGTGTTTACATCACTAATTAAATCTGCTAATACGTTACTAGgcataaaaaaagtattacttTGGACATTGTAAAGTTTTGGGGGATTtttttcacacatacacacactttctctttagCTTTATGGAAATGTAGTTATTCTATAGTATCACACAGGAATCCTTTGTACTACACTGTTAAATGTATATGGTTCTTGAGGAATTTAAGGCTTCTTTAGTTTGAAACTGGGGATGAACCCATTAAGGTGCTTTAAGGAACCTTCAGGAAACatttttcttctaaaaacaaaacttttctTGAAAGAGCTTTAAGGGGTTTCTCCTTAAAAGTTCTTCGAGGCTGTGCAATAAGTGCTGTGCAAATTTCCCACAATGCTAAAAGCTACAGATTGTGTCCAAGTTTGTGATTTGTGATGAATCTTTGTTTGAAAACTCTCCTGGAACAGGAGAAACTCTCTGTACATTTGCTCTGCAGTCTCGCGCAGGCAGCTGAGTGTTGTGGTCTGGCTGTCTTGGTGCTAGGGTGCAGATGGAGAGCAGACAGCTTGGGCCCCTCACTCAGCACAGAGACACCAATGTGAAGAAAAGGGAAAGGGCCTTGATGTCATAGAAAAGTAAATGAGGTCTCATTTTGAGGCCAAAGCTGGAAGGAATCTCGTCATTACCTTGCGATTACTGTTTAATTCCTATTGTTAATCAGAATGACAATGTGTAAATAGTGAGTTATGTAGAAGTTATTCAGCTGAGGATATATAttgtgtggtatctgcatgTCTATATAAACAGAGGATAACTTGCGCTTGGATTTCATGCATGGCAACCTAGCTTTGATCTCAGTGGTGTGTTTGGGCATGATGTAGCtcataaagcatttaaataaagacCTAATTTAATCAATTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108434977 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256655.3 True 2260 mRNA 0.44 3 59753476 59765073
XM_022663876.1 False 2255 mRNA 0.44 3 59753476 59765073

Neighbor

gene id symbol gene type direction distance location
LOC103030186 LOC108435004 coding upstream 249954 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 400351 59297681 ~ 59353125 (+)
LOC103025639 blk,LOC108435007,LOC108258139,LOC107589086,LOC107684815,LOC107746144,LOC107701472,LOC107561930 coding upstream 477942 59251973 ~ 59275534 (+)
LOC111194377 NA coding upstream 510076 59239996 ~ 59243400 (+)
LOC111194376 NA coding upstream 523088 59228844 ~ 59230388 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding downstream 2309 59767382 ~ 59786661 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding downstream 296025 60061098 ~ 60091808 (+)
LOC103035162 LOC108434989,LOC108258176 coding downstream 500764 60265837 ~ 60273289 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 514766 60279839 ~ 60281890 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 630505 60395578 ~ 60462048 (+)
G29526 NA non-coding upstream 49366 59700063 ~ 59704110 (+)
G29516 NA non-coding upstream 121008 59632119 ~ 59632468 (+)
G29515 NA non-coding upstream 121569 59631704 ~ 59631907 (+)
G29448 NA non-coding upstream 233504 59507008 ~ 59519972 (+)
G29432 NA non-coding upstream 317101 59436160 ~ 59436375 (+)
G29558 NA non-coding downstream 86998 59852071 ~ 59852524 (+)
G29560 NA non-coding downstream 92168 59857241 ~ 59857582 (+)
G29567 NA non-coding downstream 122783 59887856 ~ 59985113 (+)
G29580 NA non-coding downstream 331082 60096155 ~ 60097909 (+)
G29591 LOC108434993 non-coding downstream 362988 60128061 ~ 60131474 (+)
nme6 nme6 other upstream 155144 59586709 ~ 59598332 (+)
atraid atraid other upstream 193714 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 524636 59221266 ~ 59228840 (+)
G29382 NA other upstream 532440 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 641161 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 755269 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 2161007 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 3056670 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 3160945 62926018 ~ 62931133 (+)
G30362 NA other downstream 3570661 63335734 ~ 63345693 (+)

Expression


Co-expression Network