LOC103032801 (ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687)


Basic Information

Item Value
gene id LOC103032801
gene name ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60097488 ~ 60123478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256659.3
CGTGCGCTGtgttttgagagagagagaaaaaacttggCACTGTGGAGCTCGCTAGCGTTTTCTTATCGGAACGGGGCGATATCTGCTGAGTATTAGCGGGCTGCAGCGGGGGAGAGGCGCGGGCTCTGAGCGGCGGGGAGAGCGGGGGATGTAGCCAGACACCACGTCCCGTTTACGGTTAGCCGAGTCGCGGTGGCGGACGCTTCCCGCAGCCTGGCGGGGACGGTAACAGTAGCGAGAGAGGAGGGGATTAGCCAGACGGTCTGTCTGCCCGctgtagcttagcttagcctagcttagcAATGCTGGAGACATCAGCAGCCTGCTGTGGAGCTCAGTAAGTAGACCGCCTGCAGGACCACCCGGGCCTTCCCCGCCCTCTGTAGACCGACACACGGGCAGGGCGGTCGGCGCTGATCGGGGAACATCGGCGGATCACTGCTAGCtgctgttagctagcttagttaacctagctagcgtGTGAGGCTAGGTTAGGACAGTCAGCGAGCCTCGGGGACGTTGGCTCGCTACACCCTCGCCCTGCACATTCACTTAGTGAAGAGTCGAGGCAGCTGGATCGGAGAATAGACGGttgagggCTATGTCTTCAGCAGCCACCGCGCCCCCGTCCGTAGATAAGGTGGACGGCTTCTCCAGGAAGTCAGTCCGGAAAGCAAAGCAGAAGCGAGCGCAGAGCTCATCTCAGTTCAGATCTCAGGACAAGCCCATTGAGCTGGTGCAGTTGCCGCTGCTGAAAGATGTCTCTGCCCAAGAGCAGCCAGAGTTGTTCCTGAAGaagctgcagcagtgctgcacgCTTTTTGACTTCATGGACACGCTGTCTGACCTCAAGATGAAGGAGTACAAGCGCTCCACTCTCAACGAGCTGGTGGACTATGTGACGGTCAGCCGGGGCTACCTGACTGAGCAGACTTATCCTGAAGTCGTCAAAATGGTGTCCTATAACATATTCCGGACTCTTCCGCCCAGTGACAGTAATGAATTTGACCCAGAGGAGGATGAACCCACTCTAGAGGCTTCATGGCCACACTTACAGCTTGTCTATGAGTTTTTCATTCGCTTCCTGGAGAGTCAGGAATTTCAGCCCAGCATtgccaaaaaatacattgaccAAAAATTTGTACTACAGCTCCTGGAGCTTTTTGACAGTGAGGACCCTCGGGAGAGGGACTGCCTGAAGACTGTCCTGCACAGAATTTACGGCAAGTTCCTCGGCCTCAGGGCCTTCATCCGCAAACAGATCAACAACATTTTTCTAGGGTTTGTGTATGAAACGGAGCATTTCAATGGAGTGGCTGAGCTGCTAGAGATCTTGGGAAGCATCATCAATGGTTTTGCACTTCCTCTGAAAGCTGAACATAAGCAGTTCCTGGTGAAAGTGTTGCTGCCCCTGCACTCAGCCAGGAGTCTGTCCCTCTTCCACGCACAGCTGGCGTACTGTATCGTACAGTTCCTAGAGAAAGACCCCACGCTAACAGAACCTGTGATAAGAGGATTGTTGAAGTTTTGGCCAAAAACCTGCAGTCAGAAAGAGGTCATGTTCCTCGGAGAGCTGGAGGAGATCCTTGATGTGATTGAGCCCACACAGTTTGTCAAGATCCAGGAGCCACTGTTCAAGCAGATCTCCAGATGTGTGTCCAGCCCACATTTTCAGGTGGCAGAGCGAGCCTTGTACTACTGGAACAATGAGTACATTATGAGTCTGATTGAAGAGAACTCCAGCGTCATCCTGCCCATCATGTTTGCCAGTCTCTACCGGATCTCCAAAGAGCACTGGAACCCaGCGATATCTGCTTTAATCTACAATGTGCTGAAAGCATTCATGGAGATGAACAGCGCACTGTTTGATGAACTTGCTGCCACTTACAAATCAGACCGTCAGAGggaaaagaagaaggagaaggatCGCGAGGACTTGTGGCGGAAGCTGGAAGAGTTGGAGCTGAGGCGGGGCATCCAAAACAGCGATGGCATCATTCCCACCTAACATGGATGTCTAACTCCACCCCTCCAACCAATGGCCCTTTTTTTCTGCCACAGGGACACCACCCCCCCTCCATGCTTCTTGTGCTACATGAATTACTGTACACTCCTGCGTTTGTCTgtcctgtccttttttcttttttccccctttcctcaaaaaaaaaaaaaaatccctttcaACCTGTTTCCTTTACAATGATACTACACTGAAACAatagacaataaaaaagaaaaggagctGTATCTACCTTAGGGGAGAAAAGACTCTGTGTACACTCTACacgataaaagaaaaaaaaaaaacaaagaagaaaaaaaaaa
>XM_007256660.3
CACAACATTCCCAGGTCAAGCAGCAGAGAGCCTGATTCAActccattttttttatggttCTGAGTTGGAATTGATCTGATTTGGGGAGGAGGTGGATATGCCGTATCTGAGGACTGAGggCTATGTCTTCAGCAGCCACCGCGCCCCCGTCCGTAGATAAGGTGGACGGCTTCTCCAGGAAGTCAGTCCGGAAAGCAAAGCAGAAGCGAGCGCAGAGCTCATCTCAGTTCAGATCTCAGGACAAGCCCATTGAGCTGGTGCAGTTGCCGCTGCTGAAAGATGTCTCTGCCCAAGAGCAGCCAGAGTTGTTCCTGAAGaagctgcagcagtgctgcacgCTTTTTGACTTCATGGACACGCTGTCTGACCTCAAGATGAAGGAGTACAAGCGCTCCACTCTCAACGAGCTGGTGGACTATGTGACGGTCAGCCGGGGCTACCTGACTGAGCAGACTTATCCTGAAGTCGTCAAAATGGTGTCCTATAACATATTCCGGACTCTTCCGCCCAGTGACAGTAATGAATTTGACCCAGAGGAGGATGAACCCACTCTAGAGGCTTCATGGCCACACTTACAGCTTGTCTATGAGTTTTTCATTCGCTTCCTGGAGAGTCAGGAATTTCAGCCCAGCATtgccaaaaaatacattgaccAAAAATTTGTACTACAGCTCCTGGAGCTTTTTGACAGTGAGGACCCTCGGGAGAGGGACTGCCTGAAGACTGTCCTGCACAGAATTTACGGCAAGTTCCTCGGCCTCAGGGCCTTCATCCGCAAACAGATCAACAACATTTTTCTAGGGTTTGTGTATGAAACGGAGCATTTCAATGGAGTGGCTGAGCTGCTAGAGATCTTGGGAAGCATCATCAATGGTTTTGCACTTCCTCTGAAAGCTGAACATAAGCAGTTCCTGGTGAAAGTGTTGCTGCCCCTGCACTCAGCCAGGAGTCTGTCCCTCTTCCACGCACAGCTGGCGTACTGTATCGTACAGTTCCTAGAGAAAGACCCCACGCTAACAGAACCTGTGATAAGAGGATTGTTGAAGTTTTGGCCAAAAACCTGCAGTCAGAAAGAGGTCATGTTCCTCGGAGAGCTGGAGGAGATCCTTGATGTGATTGAGCCCACACAGTTTGTCAAGATCCAGGAGCCACTGTTCAAGCAGATCTCCAGATGTGTGTCCAGCCCACATTTTCAGGTGGCAGAGCGAGCCTTGTACTACTGGAACAATGAGTACATTATGAGTCTGATTGAAGAGAACTCCAGCGTCATCCTGCCCATCATGTTTGCCAGTCTCTACCGGATCTCCAAAGAGCACTGGAACCCaGCGATATCTGCTTTAATCTACAATGTGCTGAAAGCATTCATGGAGATGAACAGCGCACTGTTTGATGAACTTGCTGCCACTTACAAATCAGACCGTCAGAGggaaaagaagaaggagaaggatCGCGAGGACTTGTGGCGGAAGCTGGAAGAGTTGGAGCTGAGGCGGGGCATCCAAAACAGCGATGGCATCATTCCCACCTAACATGGATGTCTAACTCCACCCCTCCAACCAATGGCCCTTTTTTTCTGCCACAGGGACACCACCCCCCCTCCATGCTTCTTGTGCTACATGAATTACTGTACACTCCTGCGTTTGTCTgtcctgtccttttttcttttttccccctttcctcaaaaaaaaaaaaaaatccctttcaACCTGTTTCCTTTACAATGATACTACACTGAAACAatagacaataaaaaagaaaaggagctGTATCTACCTTAGGGGAGAAAAGACTCTGTGTACACTCTACacgataaaagaaaaaaaaaaaacaaagaagaaaaaaaaaa

Function

symbol description
ppp2r5ea Predicted to enable protein phosphatase activator activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Is expressed in female organism. Orthologous to human PPP2R5E (protein phosphatase 2 regulatory subunit B'epsilon).

NR:

description
serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256659.3 True 2325 mRNA 0.51 14 60097488 60117562
XM_007256660.3 False 1846 mRNA 0.48 14 60097488 60123478

Neighbor

gene id symbol gene type direction distance location
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding downstream 37888 59882140 ~ 60059600 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding downstream 266597 59792576 ~ 59830891 (-)
LOC107197813 NA coding downstream 393405 59700034 ~ 59704083 (-)
LOC103030505 LOC103030505,LOC108434978 coding downstream 488497 59599420 ~ 59608991 (-)
eif2b4 eif2b4 coding downstream 523877 59562829 ~ 59573611 (-)
LOC103033561 NA coding upstream 4569 60128047 ~ 60145920 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding upstream 39862 60163340 ~ 60177354 (-)
LOC103034514 LOC108434990,LOC108258108 coding upstream 61216 60184694 ~ 60219056 (-)
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding upstream 184457 60307935 ~ 60311646 (-)
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding upstream 478932 60602410 ~ 60607157 (-)
G29608 NA non-coding downstream 5729 60074072 ~ 60091759 (-)
G29563 NA non-coding downstream 239149 59858066 ~ 59858339 (-)
G29559 NA non-coding downstream 245020 59852055 ~ 59852468 (-)
G29509 NA non-coding downstream 489642 59607175 ~ 59607846 (-)
LOC111190079 NA non-coding downstream 519093 59576238 ~ 59578395 (-)
G29681 NA non-coding upstream 260525 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 264502 60387980 ~ 60388361 (-)
G29702 NA non-coding upstream 272171 60395649 ~ 60396246 (-)
G29707 NA non-coding upstream 337510 60460988 ~ 60463346 (-)
G29716 NA non-coding upstream 340498 60463976 ~ 60519797 (-)
snx17 snx17 other downstream 544578 59506926 ~ 59552910 (-)
G29478 NA other downstream 659190 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 1011602 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 1162699 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1922784 58159207 ~ 58174704 (-)
LOC103034188 LOC108434976 other upstream 25919 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 227794 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 245568 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1169398 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1708363 61831841 ~ 61890729 (-)

Expression


Co-expression Network