LOC103035162 (LOC108434989,LOC108258176)


Basic Information

Item Value
gene id LOC103035162
gene name LOC108434989,LOC108258176
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60265837 ~ 60273289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256666.3
AGTCGGACCCCCTTCCCGCGTGCGGCTGCGGAGTCAAACTCGCGCCGGACGTGGAGAAGCGAGCGCTCGGGCCAGTGCGCGCGGCGGGGCCGGAATGATGAACCCGATCGCGCTCGGAATGGCGGGGTGAAACCCGATCGCGAGACCCCGGAGGAGTGACCGAGTGAGACTTAGCTGCTGCTACCTTACCAGCACGTGTGCCCTTCAGGAGTGAGAAGAAGGAGGGggcacaacaacaacaacaaaaaaaagaaaaaaaaagaagacaagacATGGCTTCCTCTTCCAGCGAGCTCATCAGCGCCGACGAGATCAAGAGGGAGAGCCCGAGGACGACGCTGGACGAGCTCGCGCCGCTGCCGCCGAGCGCGGAGGAGAGCCTGTCCGCCGCGTCCTGCGTGTCCTCGCCGCTCGCCTTCTCGCCCGAGCAGGTGGCGTGCGTGTGCGAGGCGCTGCTGCAGGGCGGAGACGTAGAGCGGCTCGCGCGGTTCCTGTGGTCGCTGCCGCAGAGCGAGCTGCTGCGCGGAAACGAGAGCATCCTGAAGGCGCAGGCCATCGTGGCCTTCCACCAAGCGCGGTACCAAGAACTTTACTGCATCCTGGAGAGCCACAGCTTCAGCCCGGCCAACCACTCTTCCCTGCAGGACATGTGGTACAAGGCGCGCTACAGCGAGGCGGAGAAGGCGCGCGGGAGGCCGCTGGGCGCTGTGGACAAGTACCGCTTGCGCAGGAAGTACCCGCTGCCCAGGACCATCTGGGACGGCGAGGAGACCGTGTACTGCTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGACATGTACAAGAGGAACCGCTACCCGTCCCCGGCCGAGAAGAGGAACCTGGCCAAGATCACGGGCCTCTCGCTGACCCAGGTTAGCAACTGGTTTAAAAACAGGAGGCAGAGGGACAGGAACCCGTCCGAGGCGCAGTCCAAAAGTGAATCGGATGGCAATCACAGCACAGAGGATGAGTCAAGTAAAGGTCAAGAGGACCTGTCCCCTCGTCCCCTCTCCAGTGGCTCCACTGGCTCAACCACCCATGGGTCTAGCCCTGCTGTTATGTACTCTGATGGCACCACCACTGTCATTCAGCAAATCGGTGATGTCAAAATGTCCCCGCTTTCCGCAGGGATGGGCTACAATGGTGAGCTGTCGACCACCAACTCTCACTATATCAATGGTGGAGCTTATGTTCAATCACATGGCAACAGCAATATCCTGAATGGACTTGGAGCCACAGGTGGCCACTTCTTGACCTTCGATCCCCAGAGGGTCTCCCATGCCCAAGAAAGGCTACTAAGTGGCTCCTCTGTGTCCTACTCATCTTATTCAATGGAAAATCCAGAAGCCACAATTGGAAAACTGGATGGAATGCAACCTCTGGTCTCCCATTCAGATGACGGAGCCACACCTACAGTAGTCACCTTCGCCACCacctcttcctcatcctcctctaCCTCTGGAGCTCCTCATCTCAGCAGCTACAGCATGGTCAATCTTTCTGGGGTTGAGAATCTTGGTCTTCCTCCATTATTGCTACCTCCATCCTCTACAGCCCCCTCTCATGGCTCTGCTCCGCTGGATGGCGTGGTCAGCGACTCATCCCATCATTCAGGCCAGCCCCTGCTTTACACTCTCAACCAGGCAGTCAAGCAGGAGCCGTTGGACATTGGCGTGGGCTACACGTATCCCTCCACCATGGCCTTAGATCAAACTGGCAACCTAGGCTAcactgcctctctctttctatcctcAAACCTTGGACCCACGCCCGACAATGGCAGCCCCCTTGCCCCTGCTGCCACGGCCGCCGTCACCTCCGTCCTGTCCAGCACAGAGGGTCACTCCACTCTGACTCACGCTGCCCGTGGTCTCCTGGAGGGTGGGAGCACCCTGCCCTCAAACTATACAACCCATGATGCTCAGCTGCCCCTGTCCAACAACCTGGAGTCCCCTGCAGGACATGGAGAGGGGTCAGTGTGCAGGGATCTGGACATGGAAGGGAAAGAGCTTGCCAAGTTGCAGACTGTGCAGATGGACACAGACAATGACCTCTGACCCCTGTGATCATATCACCTGAAGAGCTGTGTTTCATGAGTGTTTGGTTGGTTTTCTTGCACCCCACTGTGACCTCTTATGAGGTCTCTTATGCACACGTCAGACTCCAGCTCAGATTCCACATTGCTTCCTGGATAACGTATGCAAGATGTGTACAAATGGGTGAACTAAACAAGCAGTGCCTTTTTGTCCCCAGAAATGTAGCCCACAATATCTAGCCGACTTGCACTCGGAAGGGCTGCAGAATGTACTTGCTAATGCACTGACCTTACAAAGATTATGTCTGAGCACTGTCATTTCTCTCTTACAGTAAGAGAGACTTTagtcaggagagagagagagagtgaaagatgCAGAAAAGAAGTGTAAAGAAAAGAGgcaaagaagaaaaagactTGTGAAAAGTAAAACAAGATGACAGATATTGGCAAATGTCTGCACAATCACTGCAGCTTTATATCAGTCCTTTTATGTTCCTCTTCAATATTTTATGAAAGCACAGATGTTTAATTTTTGTTGATGTTGTTGTTtggtcttttttatttaatgtttgagtGTGAAATAGTAATGTGAATGATGTTTTGTTATGATTTGCTTTTTAAATTTCAGTTCGACAACAGCTTTTGAATTTAAACACACCTTGTGTCCTTCTTGATAACAGAACATTGTATTTTTGGGCATTTAACTATTGCTACTGTGCCTTCCTTAAAGAAGTTGAATCTCTGCACAAGGAActtatttaagaaaattaagTGTTGGACAAATATGCTTCAGTTTTGCATTTCACTATTGCTTTACCATGtgaaaaaacaaggaaaactaACTAAAAGGCATTATAGTGCATTCAATTATCTTCTTCACTGATGAATAGGAACCTTCATGTATAGGATAATGAGATAGTTAGCAAACAGGAATTCTGCACATGCTGTAAATAATGACAAGTCCTAAACCTTTCTGCATTAAGAAATGAAAACAGCAtatttttctaaacttttaccccattaaattgttttatatttatacatgtaaaa

Function

NR:

description
PREDICTED: homeobox protein SIX4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15615 SIX4; homeobox protein SIX4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256666.3 True 3109 mRNA 0.51 3 60265837 60273289

Neighbor

gene id symbol gene type direction distance location
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 174029 60061098 ~ 60091808 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 479176 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 500764 59753476 ~ 59765073 (+)
LOC103030186 LOC108435004 coding upstream 762315 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 912712 59297681 ~ 59353125 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 6550 60279839 ~ 60281890 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 122289 60395578 ~ 60462048 (+)
LOC111190190 NA coding downstream 157572 60430861 ~ 60443507 (+)
rd3l rd3l coding downstream 212614 60485903 ~ 60490965 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding downstream 259453 60532742 ~ 60599366 (+)
G29596 hif1a,LOC107589062,LOC107743977,LOC107563689 non-coding upstream 88493 60165466 ~ 60177344 (+)
G29594 LOC108434976 non-coding upstream 103680 60157270 ~ 60162157 (+)
G29591 LOC108434993 non-coding upstream 134363 60128061 ~ 60131474 (+)
G29580 NA non-coding upstream 167928 60096155 ~ 60097909 (+)
G29567 NA non-coding upstream 280724 59887856 ~ 59985113 (+)
G29639 NA non-coding downstream 9296 60282585 ~ 60285943 (+)
G29641 NA non-coding downstream 14578 60287867 ~ 60288093 (+)
G29662 NA non-coding downstream 78029 60351318 ~ 60353130 (+)
G29663 NA non-coding downstream 83188 60356477 ~ 60356882 (+)
G29679 NA non-coding downstream 108752 60382041 ~ 60382256 (+)
nme6 nme6 other upstream 667505 59586709 ~ 59598332 (+)
atraid atraid other upstream 706075 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 1036997 59221266 ~ 59228840 (+)
G29382 NA other upstream 1044801 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 1153522 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 247053 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1652791 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2548454 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2652729 62926018 ~ 62931133 (+)
G30362 NA other downstream 3062445 63335734 ~ 63345693 (+)

Expression


Co-expression Network