LOC103036511 (rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072)


Basic Information

Item Value
gene id LOC103036511
gene name rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60395578 ~ 60462048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256671.3
ACAGCATTACGTCAGCGTCGAAACACCGGACTGAAGAAGCGGTTTTCACACATGCGTGCAGCTCCGCCGGGAGGagaagctacacacacacacacacactgagagagaccTGCGACACGCCGCGGCTCGTCCTCTGAGCTCAGCCGGTCCCGTGCCCTCACTGCTCCGCTCTCCGGTTCAGATTAACGAGCCTCCGGTCGGTGCGAGACACAGCACGCGCTGACGAGCCCGCGAGACCAGCATGTCCGCCAAGCCCAGCGAGGAGCCCGCTTCAGAGGACGGCTGGTACGGAGACGGCTTCGAGAGGACGGCCGGGTTCGGCGGCGCCGCGGCCCGCTCAGGGGAGCCGGAGGACGATCGGAGCGAGTCCGCGCAGATCTACAGCCGCGCCGAGAGCGCGCGCCAGCCGCTCCCTGTTGTCATGGAAACTGCATCTACAGATAAACTGGATACAGACTTTCTGAAGAAGAACCTCGGTGACATGGGTGACCCATACACATCCCTCCTGTCCAGTCAGAGTTACTCCTCCCAGCAGGACACCTCCTACTTCTCAGGAGACCTAGGCAGAGGGGAGCAGAAGCAACCAATGGGTGTAGATGACTTCCTCAGTCTGGAGTCCCAGTCTGCCATGTTCAGCTCAGACTCGGGCATTGAGATGACCCCGAGCACCGAGCTGGGCTACAGTTCTCACAAGCCTTCTGATTCCACCTGCAGCTACATGGACATCAGTAGCAGGGAGAAGCCCCAGCAGCCTGAGGAAGAATGGGGGATAAGAAACGTCTCAGAACGTTCCCCACTGACCAGCCTGAGGGGAGAGTTCTACCTGGAGAAGAGCCCTTCCCCAGTTGAGGTGGAGACTCTGGGTCCTGCAGCAGCACTGGATTCACAGACCTTCCCCTTTGTTGAGGAGCCTTCAGATGATGAGCTGAGCGACTATCAGCCCTACCGTTCTCCAGGGGCTGAAGGCAACGCTAGCCCCGTCAAGATCACGTTGACTGAGATGCCATCATCTTCGACCTCGCCCACTCAGCACACCCCTCCGGTCACAGtgtcagagaaagagagcatcCTGAGCCTGGGGCTGCAGGGAGTGCCCACCGTCACACTGTCTGAGCCAGAGGATGAAAGTCCTGGCTCCTCCACACCACCTCTCACAGAGTCGGACTCTCCGTCTGATCCTGTGATTTATGCCAGTGAGGTGAAGACTGTGAGCTCCACTCAGGAGAAGATTCTGGAGTCTTCTCAAGCACCCTTTCAGAATTCCTCTAAGCAGAGTCCTTCAGTGGAACCTAAAATCAGCTCAACTTTTCCCTTATATGCTAAGGATGCTGATGCCAGTGGTGGAGAATCTGGCGACTCAGAGATTGAGCTTGTGTCTGAAGAACCTAGCCCACAGGCTCCAAGCTCTGGCTACATGAGCTTCAGCAAAAGtctaaccaccaccaccactactcCTTCAGCACCTGCTTCTGTTCAAgctactgctccagcctctgccCCTGCTCCTGCCCCAGCCCCTGCTCCAGCCACTGCAACAATTCCCAGCCCGGCTATGCAGTACAGCATCCTGCGGGAAGAGCGTGAGGCCGAACTTGACAGCGAGCTGGCCCTGGAGTCCTGTGGAGAAGAAAGCCCCAAAAGATTCCCCCTGGACTCCACCACCACCAAGCCAGGCAAGATCGATCCACATCCACCCAAACCTTCTTCTCCTGTGGTCACCCCCACAGCTACTCCCCCTGTGAGCCCCACCCCTCCTCCTGCAGCCCCCACCACAAATATACCTCCAAAAGAGAAGAGCCCAGTTGTGGAGGAGAAGCCCAagcccagcagcagcagtcccTTAGCGCCCAGCTCAGTCTTGCCGGAGCTGAAGGTAGAGCAGCCAACTGAGGAGAAGCTTAGTGAGAGAAGACGGTCCAGTCAGAGCCGTCGTGGCTCTGAAAGGCATTCCGCACCACCTGCCATCTTCCAGGGCCTGACCAGAGAGAAAGCGATGGAGCTGTTGTACTGGCGGGACCTGAAGCAGACAGGGCTACTGTTTGGAAGTGTGTTGCTGTTGCTCTTCTCTCTGACTCAGTTTAGTGTGGTCAGTGTGGTGGCCTACCTGGCCCTGGCTGCCCTTTCAGCCACCATCAGCTTCAGAGTCTACAAATCTGTGCTGCAGGCTGTGCAGAAGACTGATGAGGGACACCCCTTTAAGTCATACCTGGAGGTGGAGATTTCACTGTCCCATGATCAGATGCAGAGGTATGCAGAGAACGTTCAGCGCTACATTAACAGCACTATGAGGGAGCTGCGCAGACTCTTTCTTGTGCAGGACCTGGTGGATTCACTAAAGTTTGCAGTGCTCATGTGGCTGCTGACTTATGTAGGAGCACTCTTCAACGGCCTCACTCTTCTCATCATGGCTGTGGTTTCCATGTTCTCAATGCCTGTGGTCTATGAGAAATACCAGGCACAGATTGACCAGTATTTGGGCCTAGTAAAGACTCATGTAAACTCAGTAGTGGGGAAGATCCAGGAGAAGATTCCTGGGGCCAAGCGAAAGGCTGAGTAAAGCCTGAAGGGCAGCTGGAGAACACAAGGATGCCCTGACCTGCATTTCCTTTATTATAGGGAAAGTTAGATGTTGGTCAGGGGGTTTcgcaacaacacacacacacagatacacacacagacacacagatacacacacatacataaacatacacacaaatgtACAAGTTACTGGAGCATAGTTCAACTTTGTGCACACTGTGGTGTCTAGAGCAACAGCCAAGCCGCTCAGGAGAAGTCCCACCCTCGCCCAGTAaccataaagtaaaaaaaaaaaaaacgcgctGTCACTCAAGCACTACGCTCTagtgaggggggaaaaaaacaacaaaatatagGAGTAagttgaaacaaaaaaaagacaaaaaaaaaattgtttttgtgttgCTTCTTAAGTGCATGAAGTCAAGAGTCTTAAGCGCTGatgcatttcttcttcttctctggtTTCCTTTGTTCTTGGCTTTATCAGCTATGCTGAAGACATTTCTCTGTAGTGTGTGAAGAATCTCTTCAGCTTTAGTGCTCTCCTGTGATAGTCTCTTCTTcttcaagaaaaataaaaaagcagcttctTTCGTCTCCGGGGCGTCGGGTGGGGCTTCTCTTCTCTCAGTATACCTGAAAACATATAAACTtcaatattacttaaatatcAGCTAGACGCGGTGGCCTGCCGAGGTTTACCTTCTTTGTGTGGCACAAGAGCAAATATTTAGCAATGTTCTGATTAGATATGGTAAACTAActtgtagtgtgttttttttatatatatgaatatataactCATTACGGGAACTACAGAGACTCATGGTTTTAGGTACTGTCGTCAATCTTCTTTTAAGCAAATTGCAATCGAACAAGAGAGACGGAGGAGGATGAAGCGTAAAGTGAACGGGTGCCTGCTTGGTGATTCTGTCCATCTTTGTACTATGTTGAGTGTAGTTCTTCTTAGCCATGGACTCTTAACTATTTGCACTTAAAATGTACTCATCACTGAATGCGGAAataaatgttcttaaatgtA
>XM_007256672.3
GggtgaggagagaaagagagagcgagagagagatagcgagcaaaagagagagagagcagcgcaGTGGAGCAGCAGTAGAAGCAGCAATACCTAGTGTGTTAGCAATAGCTTAGTGTCATCCCTTCCCTTTACGCAGCCCAGCATGCAGGCCAGCACCACGGCAGCCGCAGACTCGACCAAGATGGAGGGCTTTTGGAGCAGCTGGAAGTGCCaggCGATGGAGCTGTTGTACTGGCGGGACCTGAAGCAGACAGGGCTACTGTTTGGAAGTGTGTTGCTGTTGCTCTTCTCTCTGACTCAGTTTAGTGTGGTCAGTGTGGTGGCCTACCTGGCCCTGGCTGCCCTTTCAGCCACCATCAGCTTCAGAGTCTACAAATCTGTGCTGCAGGCTGTGCAGAAGACTGATGAGGGACACCCCTTTAAGTCATACCTGGAGGTGGAGATTTCACTGTCCCATGATCAGATGCAGAGGTATGCAGAGAACGTTCAGCGCTACATTAACAGCACTATGAGGGAGCTGCGCAGACTCTTTCTTGTGCAGGACCTGGTGGATTCACTAAAGTTTGCAGTGCTCATGTGGCTGCTGACTTATGTAGGAGCACTCTTCAACGGCCTCACTCTTCTCATCATGGCTGTGGTTTCCATGTTCTCAATGCCTGTGGTCTATGAGAAATACCAGGCACAGATTGACCAGTATTTGGGCCTAGTAAAGACTCATGTAAACTCAGTAGTGGGGAAGATCCAGGAGAAGATTCCTGGGGCCAAGCGAAAGGCTGAGTAAAGCCTGAAGGGCAGCTGGAGAACACAAGGATGCCCTGACCTGCATTTCCTTTATTATAGGGAAAGTTAGATGTTGGTCAGGGGGTTTcgcaacaacacacacacacagatacacacacagacacacagatacacacacatacataaacatacacacaaatgtACAAGTTACTGGAGCATAGTTCAACTTTGTGCACACTGTGGTGTCTAGAGCAACAGCCAAGCCGCTCAGGAGAAGTCCCACCCTCGCCCAGTAaccataaagtaaaaaaaaaaaaaacgcgctGTCACTCAAGCACTACGCTCTagtgaggggggaaaaaaacaacaaaatatagGAGTAagttgaaacaaaaaaaagacaaaaaaaaaattgtttttgtgttgCTTCTTAAGTGCATGAAGTCAAGAGTCTTAAGCGCTGatgcatttcttcttcttctctggtTTCCTTTGTTCTTGGCTTTATCAGCTATGCTGAAGACATTTCTCTGTAGTGTGTGAAGAATCTCTTCAGCTTTAGTGCTCTCCTGTGATAGTCTCTTCTTcttcaagaaaaataaaaaagcagcttctTTCGTCTCCGGGGCGTCGGGTGGGGCTTCTCTTCTCTCAGTATACCTGAAAACATATAAACTtcaatattacttaaatatcAGCTAGACGCGGTGGCCTGCCGAGGTTTACCTTCTTTGTGTGGCACAAGAGCAAATATTTAGCAATGTTCTGATTAGATATGGTAAACTAActtgtagtgtgttttttttatatatatgaatatataactCATTACGGGAACTACAGAGACTCATGGTTTTAGGTACTGTCGTCAATCTTCTTTTAAGCAAATTGCAATCGAACAAGAGAGACGGAGGAGGATGAAGCGTAAAGTGAACGGGTGCCTGCTTGGTGATTCTGTCCATCTTTGTACTATGTTGAGTGTAGTTCTTCTTAGCCATGGACTCTTAACTATTTGCACTTAAAATGTACTCATCACTGAATGCGGAAataaatgttcttaaatgtA
>XM_022663950.1
CCCCCCGGCCGGACTATGACCCGGTCTGTTAGGCCTTCAGATAAACTGGATACAGACTTTCTGAAGAAGAACCTCGGTGACATGGGTGACCCATACACATCCCTCCTGTCCAGTCAGAGTTACTCCTCCCAGCAGGACACCTCCTACTTCTCAGGAGACCTAGGCAGAGGGGAGCAGAAGCAACCAATGGGTGTAGATGACTTCCTCAGTCTGGAGTCCCAGTCTGCCATGTTCAGCTCAGACTCGGGCATTGAGATGACCCCGAGCACCGAGCTGGGCTACAGTTCTCACAAGCCTTCTGATTCCACCTGCAGCTACATGGACATCAGTAGCAGGGAGAAGCCCCAGCAGCCTGAGGAAGAATGGGGGATAAGAAACGTCTCAGAACGTTCCCCACTGACCAGCCTGAGGGGAGAGTTCTACCTGGAGAAGAGCCCTTCCCCAGTTGAGGTGGAGACTCTGGGTCCTGCAGCAGCACTGGATTCACAGACCTTCCCCTTTGTTGAGGAGCCTTCAGATGATGAGCTGAGCGACTATCAGCCCTACCGTTCTCCAGGGGCTGAAGGCAACGCTAGCCCCGTCAAGATCACGTTGACTGAGATGCCATCATCTTCGACCTCGCCCACTCAGCACACCCCTCCGGTCACAGtgtcagagaaagagagcatcCTGAGCCTGGGGCTGCAGGGAGTGCCCACCGTCACACTGTCTGAGCCAGAGGATGAAAGTCCTGGCTCCTCCACACCACCTCTCACAGAGTCGGACTCTCCGTCTGATCCTGTGATTTATGCCAGTGAGGTGAAGACTGTGAGCTCCACTCAGGAGAAGATTCTGGAGTCTTCTCAAGCACCCTTTCAGAATTCCTCTAAGCAGAGTCCTTCAGTGGAACCTAAAATCAGCTCAACTTTTCCCTTATATGCTAAGGATGCTGATGCCAGTGGTGGAGAATCTGGCGACTCAGAGATTGAGCTTGTGTCTGAAGAACCTAGCCCACAGGCTCCAAGCTCTGGCTACATGAGCTTCAGCAAAAGtctaaccaccaccaccactactcCTTCAGCACCTGCTTCTGTTCAAgctactgctccagcctctgccCCTGCTCCTGCCCCAGCCCCTGCTCCAGCCACTGCAACAATTCCCAGCCCGGCTATGCAGTACAGCATCCTGCGGGAAGAGCGTGAGGCCGAACTTGACAGCGAGCTGGCCCTGGAGTCCTGTGGAGAAGAAAGCCCCAAAAGATTCCCCCTGGACTCCACCACCACCAAGCCAGGCAAGATCGATCCACATCCACCCAAACCTTCTTCTCCTGTGGTCACCCCCACAGCTACTCCCCCTGTGAGCCCCACCCCTCCTCCTGCAGCCCCCACCACAAATATACCTCCAAAAGAGAAGAGCCCAGTTGTGGAGGAGAAGCCCAagcccagcagcagcagtcccTTAGCGCCCAGCTCAGTCTTGCCGGAGCTGAAGGTAGAGCAGCCAACTGAGGAGAAGCTTAGTGAGAGAAGACGGTCCAGTCAGAGCCGTCGTGGCTCTGAAAGGCATTCCGCACCACCTGCCATCTTCCAGGGCCTGACCAGAGAGAAAGCGATGGAGCTGTTGTACTGGCGGGACCTGAAGCAGACAGGGCTACTGTTTGGAAGTGTGTTGCTGTTGCTCTTCTCTCTGACTCAGTTTAGTGTGGTCAGTGTGGTGGCCTACCTGGCCCTGGCTGCCCTTTCAGCCACCATCAGCTTCAGAGTCTACAAATCTGTGCTGCAGGCTGTGCAGAAGACTGATGAGGGACACCCCTTTAAGTCATACCTGGAGGTGGAGATTTCACTGTCCCATGATCAGATGCAGAGGTATGCAGAGAACGTTCAGCGCTACATTAACAGCACTATGAGGGAGCTGCGCAGACTCTTTCTTGTGCAGGACCTGGTGGATTCACTAAAGTTTGCAGTGCTCATGTGGCTGCTGACTTATGTAGGAGCACTCTTCAACGGCCTCACTCTTCTCATCATGGCTGTGGTTTCCATGTTCTCAATGCCTGTGGTCTATGAGAAATACCAGGCACAGATTGACCAGTATTTGGGCCTAGTAAAGACTCATGTAAACTCAGTAGTGGGGAAGATCCAGGAGAAGATTCCTGGGGCCAAGCGAAAGGCTGAGTAAAGCCTGAAGGGCAGCTGGAGAACACAAGGATGCCCTGACCTGCATTTCCTTTATTATAGGGAAAGTTAGATGTTGGTCAGGGGGTTTcgcaacaacacacacacacagatacacacacagacacacagatacacacacatacataaacatacacacaaatgtACAAGTTACTGGAGCATAGTTCAACTTTGTGCACACTGTGGTGTCTAGAGCAACAGCCAAGCCGCTCAGGAGAAGTCCCACCCTCGCCCAGTAaccataaagtaaaaaaaaaaaaaacgcgctGTCACTCAAGCACTACGCTCTagtgaggggggaaaaaaacaacaaaatatagGAGTAagttgaaacaaaaaaaagacaaaaaaaaaattgtttttgtgttgCTTCTTAAGTGCATGAAGTCAAGAGTCTTAAGCGCTGatgcatttcttcttcttctctggtTTCCTTTGTTCTTGGCTTTATCAGCTATGCTGAAGACATTTCTCTGTAGTGTGTGAAGAATCTCTTCAGCTTTAGTGCTCTCCTGTGATAGTCTCTTCTTcttcaagaaaaataaaaaagcagcttctTTCGTCTCCGGGGCGTCGGGTGGGGCTTCTCTTCTCTCAGTATACCTGAAAACATATAAACTtcaatattacttaaatatcAGCTAGACGCGGTGGCCTGCCGAGGTTTACCTTCTTTGTGTGGCACAAGAGCAAATATTTAGCAATGTTCTGATTAGATATGGTAAACTAActtgtagtgtgttttttttatatatatgaatatataactCATTACGGGAACTACAGAGACTCATGGTTTTAGGTACTGTCGTCAATCTTCTTTTAAGCAAATTGCAATCGAACAAGAGAGACGGAGGAGGATGAAGCGTAAAGTGAACGGGTGCCTGCTTGGTGATTCTGTCCATCTTTGTACTATGTTGAGTGTAGTTCTTCTTAGCCATGGACTCTTAACTATTTGCACTTAAAATGTACTCATCACTGAATGCGGAAataaatgttcttaaatgtA

Function

symbol description
rtn1b Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; eye; gill; heart; and muscle. Orthologous to human RTN1 (reticulon 1).

NR:

description
PREDICTED: reticulon-1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20721 RTN1; reticulon-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256671.3 True 3583 mRNA 0.52 9 60395578 60462048
XM_007256672.3 False 1807 mRNA 0.45 7 60446705 60462048
XM_022663950.1 False 3183 mRNA 0.50 9 60396264 60462048

Neighbor

gene id symbol gene type direction distance location
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding upstream 113688 60279839 ~ 60281890 (+)
LOC103035162 LOC108434989,LOC108258176 coding upstream 122289 60265837 ~ 60273289 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 303770 60061098 ~ 60091808 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 608917 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 630505 59753476 ~ 59765073 (+)
rd3l rd3l coding downstream 23855 60485903 ~ 60490965 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding downstream 70694 60532742 ~ 60599366 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding downstream 241034 60703082 ~ 60793830 (+)
LOC103031412 NA coding downstream 532879 60994927 ~ 61163598 (+)
trnad-guc NA coding downstream 1231165 61693213 ~ 61693284 (+)
G29679 NA non-coding upstream 13322 60382041 ~ 60382256 (+)
G29663 NA non-coding upstream 38696 60356477 ~ 60356882 (+)
G29662 NA non-coding upstream 42448 60351318 ~ 60353130 (+)
G29641 NA non-coding upstream 107485 60287867 ~ 60288093 (+)
G29639 NA non-coding upstream 109635 60282585 ~ 60285943 (+)
G29691 NA non-coding downstream 1929 60463977 ~ 60519867 (+)
G29772 NA non-coding downstream 227953 60690001 ~ 60690253 (+)
G29775 xrcc3 non-coding downstream 238297 60700345 ~ 60702123 (+)
G29812 NA non-coding downstream 365689 60827737 ~ 60827940 (+)
G29825 NA non-coding downstream 467074 60929122 ~ 60930577 (+)
nme6 nme6 other upstream 797246 59586709 ~ 59598332 (+)
atraid atraid other upstream 835816 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 1166738 59221266 ~ 59228840 (+)
G29382 NA other upstream 1174542 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 1283263 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 58294 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1464032 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2359695 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2463970 62926018 ~ 62931133 (+)
G30362 NA other downstream 2873686 63335734 ~ 63345693 (+)

Expression


Co-expression Network