ttr (ttr)


Basic Information

Item Value
gene id ttr
gene name ttr
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62935685 ~ 62940874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257009.3
CAATTTCAGTATATAAGACTCTGACTGTCCTGCTGCCTGTAGTGTTCCTCCACAATGGCcaaagctagcatttttatattCCTCGCTTCAACACTCGTCTTCTGTCAGGCTGCTCCTGTGGATGTACATGGTGGTTCAGACTCCCATTGTCCGCTGACAGTGAAGATCCTAGATGCAGTGAAAGGTGTCCCTGCTGGAAATGTGGCACTCAAGGTTTCCCGCCAAGGCTCGGACGGGACATGGGAAAAGATTGCTAGTGGCACAACAGATTTAGCTGGAGAGGTTCATAACCTTATCACAGACCAGGACTTCACACCTGGTGTTTACCGCGTGGAGTTCGACACTAAAAGCTACTGGAAGGCAGAGGGCCGCACACCCTTTCATGAGGTGGCTGACGTGGTGTTTGCCGCTCACACAGAAGGACATCGCCACTACACTCTGGCCTTGTTACTGAGCCCCTTCTCCTACACCACAACAGCTGTAGTGGTCAAAGCACACGACTgaagctgcaaaaaaaacacatatcacATCACAATACTACAGAGCGTAATGCAGTGAACAAACCGGCAACGCAGTGAATAGACTGGCAAACAAAGATCTGTAACCAGGATGCCGCTTCTGAAACTGGTGTTACAGCAAAAGTGGACCCTCGAAAAAGGAGTAACAAAGACATAGAAGAAAGGATCCTCCCGATTTTCTGCTCCAGTTCATCAATCAGACGCTTCAGATGGTCTACATACATAGCTCAAGATTCAAATTAAAACTTCTGAAAATAA

Function

symbol description
ttr Predicted to enable hormone activity and thyroid hormone binding activity. Predicted to be involved in purine nucleobase metabolic process. Predicted to act upstream of or within retinol metabolic process and thyroid hormone transport. Predicted to be located in extracellular region. Is expressed in liver. Human ortholog(s) of this gene implicated in Alzheimer's disease; amyloidosis; carpal tunnel syndrome; dystransthyretinemic hyperthyroxinemia; and transthyretin amyloidosis. Orthologous to human TTR (transthyretin).

NR:

description
transthyretin

GO: NA

KEGG:

id description
K20731 TTR; transthyretin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257009.3 True 776 mRNA 0.47 5 62935685 62940874

Neighbor

gene id symbol gene type direction distance location
LOC103046397 NA coding upstream 9880 62909091 ~ 62925805 (+)
LOC103046101 LOC108414576,LOC108416204 coding upstream 28169 62888868 ~ 62907516 (+)
LOC103034413 NA coding upstream 50387 62869111 ~ 62885298 (+)
LOC103033766 LOC103033766,LOC108416260 coding upstream 142097 62791748 ~ 62793588 (+)
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding upstream 945021 61984639 ~ 61990664 (+)
anapc4 anapc4,LOC107665412,LOC107683992 coding downstream 125646 63066520 ~ 63086982 (+)
slain2 slain2 coding downstream 147106 63087980 ~ 63111659 (+)
slc10a4 slc10a4 coding downstream 182432 63123306 ~ 63131100 (+)
zar1 zar1 coding downstream 192086 63132960 ~ 63134737 (+)
ociad1 NA coding downstream 349260 63290134 ~ 63295723 (+)
G30168 NA non-coding upstream 130931 62803591 ~ 62804754 (+)
G30138 NA non-coding upstream 196773 62737567 ~ 62738912 (+)
G30130 NA non-coding upstream 283748 62649364 ~ 62651937 (+)
G30125 NA non-coding upstream 347629 62587723 ~ 62588056 (+)
G30122 NA non-coding upstream 373605 62561878 ~ 62562080 (+)
G30280 NA non-coding downstream 175988 63116862 ~ 63117415 (+)
G30311 NA non-coding downstream 198424 63139298 ~ 63142668 (+)
G30314 NA non-coding downstream 208792 63149666 ~ 63150215 (+)
G30335 NA non-coding downstream 323076 63263950 ~ 63288134 (+)
LOC111191941 NA non-coding downstream 356989 63297863 ~ 63298732 (+)
LOC103035278 NA other upstream 4552 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 82397 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 999602 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2410634 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 3337353 59586709 ~ 59598332 (+)
G30362 NA other downstream 394860 63335734 ~ 63345693 (+)
kit kit other downstream 1290370 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 2081545 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 2136906 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 2157628 65098502 ~ 65098573 (+)

Expression


Co-expression Network