anapc4 (anapc4,LOC107665412,LOC107683992)


Basic Information

Item Value
gene id anapc4
gene name anapc4,LOC107665412,LOC107683992
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63066520 ~ 63086982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257017.3
CGTAGTTATGTTTTTAGCGGCGGGTAGTAGAGAAGCCGGGCTGCTCAGCCCGCACACTgcgtgttatttatttatttcactggaTTAATAATAAGTGTTCAGCTTTTTCTGATAAAATCAGCGCGTGTGGGGATTATAGAGCTCAAGTCCAAGTCACCCTGATTACAGTTAATGATCTTTATTGAGCGTTCGAGTTTGGAAACGAAAGGGCTTCACAATGCCTGCTTTCCGACAAGTGGGGGAGAAGCAGCTGCCAAACCCAGTTCTGTACATGGCCTGGTCTCCTAAAAGGGACCTCATCGCTTTGGTCAACACAGCTGGTGAGcTCCTGCTGCATCGCCTTGCCAACTTTCAGCGTGTGTGGAATTTACCCCCAAGTGAAAATACAGGAAAAGAGATCACATCTTTGGCCTGGAGGCCTGATGGCAAAATCTTGGCATTTAGTCTGGGGGACACAAAGCAGGTGGTCCTGTGTGATGCTGAGAAGGCAGAGATCCTCCACCTGTTTACTGTAGACTACCCCGTGTCTTGCATGCACTGGATGGAAGTGCAGAGTGACAGcagtgtatCATCATCGTTCACTGACTCTGAAGATGAGTCCAACCGATTCCTGCCCAAGCTACCAATTTTACCCAAAAGCTACAGCTCCACATCAAAGATTTTCAGTGAAGAAAAATCAGATGAAGTCACCAACCTCTTGGGAGACGTGAGACTCAATATCCTGGTGGTAGGCGGGCAGTCTGGCTTTGTGGAACTCTATGCATATGGCCTGTACAAGATAGCTACACTAAACACAATTACCGGGGTTTGTCGCAGTCTCTGTCTCTCCGGTGACCTCAAGTCTCTTTCCATTATCACAGAAGTGAGATCTCCAGAAGACAATGCTGAGATCCATTACGTACAGTTGGATACAGGACTGCTTTCTTCTTGTCTTCCGGAGTTAACCAGGATGGCACGAAAATTTACACACATCTCCACCCTAATACAGTACCTGcgcctctctctcacttgtatGTGTGAAGCCTGGGAGGACATCCTCATGCAGATGGATCTCCGCCTCACCAAGTTTGTCCAGGAGAAAAATACCAACACTCAAGTTCAGGATGAGTTCTTGGAGCTTCTGCTCTGGGGACATGCAAGcCCTGAGCTGCAGGCTCTACTCATGAATCAGCTGACAGTCAAAGGCCTGAAGATGTTGGGCCAGTCTATTGAGTCATCCTACTCAAGCATTCAGAAATTGGTAATCAGTCACTTACAGAGtggttcagaagctctgctgtaTTATTTAAGTGAAGTGAAGGGCATGGCTTTGTGGAAGCAGAAGTTTCAGCCCCTGGGTCTGGACCCTACAGCCATAGAAGATGCCATCACAGCAGTTGGCTCCTTCACGCTAAAGGCTAGTGAACTCCTACAAGTGATTGATAAAAGTATGAAGAATTTTAAAGCTTTCTTCCGATGGCTGTATGTTGCGATGCTTCGCATGTCAGAGGACCATGTTCCACCAGAGCTAAACAAGATGACCCAGAGGGACCTTGCATTCGTTGCAGATTTCCTTTCTGAGCATTTTAGTGCTAACGAAGAGCTGTTTGATCGCAAAGGGAAGTATTTTAATGTGGAGCGAGTGGGGCAGTATCTGAAAGATGAGGATGAAGACCTGGTGTCTCCACCTAACATGGACGGAAACCACTGGGTGACGTTTGTTCAGCAGAGCACACACCTCAAAGAGAGCCCGCTGCTGTTCCCCACCTACCCGCAAAAATCCCTGCACTTTGTCAAGAGGATGATGGAGAGCACTATCGATATCTGTCTGCAGAAACCAGCTgGTGTAATCGGGGGTTCAGTGAAGCAGGCTGTGCGTTTACCCCTGTACTCCGTATCTAAGAGttctGAGGACACGCCTCGGTTGTTTGAGCTTCCTTCACTATGGAATGATAAGAATGCTGCTATGCACTATATAGTGTTCTGCATGCAAGAGATCTCACCCTCCAAAATTTACATTCTGAGAAGAGCAACAGATCCAAACAGgtCTGTCCCTAATGGCTTGGTGGCCATAGACCTGAATACTCCTCTGAACACTACTATTGATGATGAGGCGCCTGTAGCAGAGTCTGTTGATCGCTCCTATAGTTGCCTCGATGCCCGCCTTTATGATGACGAGACGTTGACAGTGGTGTTGCAGGGCCAGGACAGTGATGATAACAGGCTCCGCCTTCTTGCCCAGCTTCCCCTTGGCTCTGCCCTCAGATGTGAGGAAGGGTTTACGTGGGACCCCAGCCTTAGGCTGGATCAGCAAAGTGAGGGGATCCCCGCACAAGGGCTCACCTGGGGAAACCAAAGCCGAGATCTGGAGAATATGAAGGCCCAGTTTGTTGCTGTGAATGGCATCCGCAAAGTAGCTTGTGTGCTGAGCTCAAACCTGCGACACATCCGCGTGTTTGAGATGGACGTTGAAGACGAGGAGGATGAAGAACGGCCAGACGACTCACAGGACATCAGCTCCGATCAGGACGGTCTGGAGGAAACACAAGCCAATCGTGGAGCGACAGGAGCAGATGGAGACAAAAAGGCAGAGGCTTCTGGGGAAACAGGGGAAGAGTCAGGGGTCGCCCTGGAACAGACGTCAGCATCTGATACACTATGACCTTTCCCTCCCACTGGACTTTTAAACATGCCAACGTCTTACTTTGTGCAGACCAGTTGAGTTTCAGTAAACAATTTCAAGTATTTTTGTAATGATTGTACATCTGACTGAAACAAGTTCTGTTGTGATGTTCTGTTTTGAGAATAAAGTGACTTTTTTGAGCAGG

Function

symbol description
anapc4 Predicted to be involved in anaphase-promoting complex-dependent catabolic process; positive regulation of mitotic metaphase/anaphase transition; and protein K11-linked ubiquitination. Predicted to act upstream of or within cell division and regulation of mitotic metaphase/anaphase transition. Predicted to be part of anaphase-promoting complex. Predicted to be active in nuclear periphery. Orthologous to human ANAPC4 (anaphase promoting complex subunit 4).

NR:

description
anaphase-promoting complex subunit 4 isoform X1

GO:

id name namespace
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0005680 anaphase-promoting complex cellular_component

KEGG:

id description
K03351 APC4, ANAPC4; anaphase-promoting complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257017.3 True 2807 mRNA 0.48 29 63066520 63086982

Neighbor

gene id symbol gene type direction distance location
ttr ttr coding upstream 125646 62935685 ~ 62940874 (+)
LOC103046397 NA coding upstream 140715 62909091 ~ 62925805 (+)
LOC103046101 LOC108414576,LOC108416204 coding upstream 159004 62888868 ~ 62907516 (+)
LOC103034413 NA coding upstream 181222 62869111 ~ 62885298 (+)
LOC103033766 LOC103033766,LOC108416260 coding upstream 272932 62791748 ~ 62793588 (+)
slain2 slain2 coding downstream 998 63087980 ~ 63111659 (+)
slc10a4 slc10a4 coding downstream 36324 63123306 ~ 63131100 (+)
zar1 zar1 coding downstream 45978 63132960 ~ 63134737 (+)
ociad1 NA coding downstream 203152 63290134 ~ 63295723 (+)
ociad2 ociad2 coding downstream 220967 63307949 ~ 63314957 (+)
G30168 NA non-coding upstream 261766 62803591 ~ 62804754 (+)
G30138 NA non-coding upstream 327608 62737567 ~ 62738912 (+)
G30130 NA non-coding upstream 414583 62649364 ~ 62651937 (+)
G30125 NA non-coding upstream 478464 62587723 ~ 62588056 (+)
G30122 NA non-coding upstream 504440 62561878 ~ 62562080 (+)
G30280 NA non-coding downstream 29880 63116862 ~ 63117415 (+)
G30311 NA non-coding downstream 52316 63139298 ~ 63142668 (+)
G30314 NA non-coding downstream 62684 63149666 ~ 63150215 (+)
G30335 NA non-coding downstream 176968 63263950 ~ 63288134 (+)
LOC111191941 NA non-coding downstream 210881 63297863 ~ 63298732 (+)
LOC103035278 NA other upstream 135387 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 213232 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 1130437 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2541469 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 3468188 59586709 ~ 59598332 (+)
G30362 NA other downstream 248752 63335734 ~ 63345693 (+)
kit kit other downstream 1144262 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 1935437 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 1990798 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 2011520 65098502 ~ 65098573 (+)

Expression


Co-expression Network