LOC103038514 (LOC108414611)


Basic Information

Item Value
gene id LOC103038514
gene name LOC108414611
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63114090 ~ 63119496 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257024.3
GACACTAAAGCCTCAGAGTAAATAATTCACTGTTATTGATCTGGTCAGAATCCACATTACAAAAACCTTTGAAGTTCACACAAATACTTTTTTGATTTCCTCTGACCGATGTTCCAGTAAAGCCTGTGGAAAGGGCATTTAAAAGTGAATCAGGAACGGAATTATATTAATTTGAGAAAGCTTCATATATCAGAGAGGCTTGTGAAGATGGGTTTCTGGGTCCTCTTTGTGCTGAACATTATCATCTCTTCCGGCGATCATGGTGTCTTCTCATGTCCACAGCGATGCACCTGTCACTTCAGCAGTAAATCCACTGAGGTGGTCTGTCCTGATGCCTCTCTCTCCCATTTCCCTAATGACAGTCTTCCAGGTAACACCACCTCCCTGACCATTCAGTACACCAACCTGGACAGTATCACCACCCATGAGCTGAGAGCTACACCCCTCCTGCAGGAGCTTCACCTACCAGGGAACAGACTATCCACTCTCCCTGCAGACATGCTTATGGGCCTACCTCATCTCCATACCATAGACCTCACGGGAAACCAGCTAAATGACTTACCTGCTCAGGTATTCTACCATGCCCCGCTGCTCAACCTCGTACTTAAAGACAATCTGCTCACAAGTGCGAATGCGGACTGGCTGCCCAGCaacagcaacctcacctggctGGACTTGTCAGGGAACAGAATCATGAAAGCCCCCTTTGCTCTACTGAAGAACCTGGGCCGCCTGGAGACTCTGCACCTCTCTCAGAACCTCCTGGAAGAGCTCCCAGCCGACAGTCTCCACTCGCTTCCCGCCCTGGAGAGACTTTACCTGGACAACAATAAACTCCAGTCCCTGGATGCTAAGGCCTTCAGCCAAAACGTTAATCTAACTCACCTGTTCCTGCAGAAGAACAAGCTGGAGAGTCTCCCTGCCATGGTCTTTCACGGCCTGGACCGTCTGCAGTACTTGGACCTGAGTGAGAACAGGCTGAGGTTCCTGGCTCCAGAAACCCTCGGCTTAGGGATCAGCTGGGTGGAGCTGAACCTGAACCCCTGGCACTGCGATGCTAAGATGGAATACTTGTGGAAATGGCTGAACAAGCAGCCAGTGCAGTCCCAGCCAACATGTGCCTCACCTGAGAGTCTGAAGGACAGAGCCATCACTACTCTCACTCGCAAAGAGCTGGGCCTGGCAGATTAATGAATGAGGAGGGATGAAGAAGCTGGATGACAGTGTAAAAATGTGAGAAAAGATGAGAAAGAAGAACCACAAAATAGGACAGCACAGCGATTTACAAATAGtgttcacatatatataaacGTATAACTCTTAATTGCGAGTATTacaattattaaacaaaaccatattaaaataaaccacTGTTTCCTGTTCAGAAGAAATGTTTTACATGTTGTTCATGACAAATATGCAGTAAAgtgtacaggtgcatctcaaaaaataagaatagcattgaaaagt

Function

NR:

description
PREDICTED: leucine-rich alpha-2-glycoprotein-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257024.3 True 1470 mRNA 0.47 4 63114090 63119496

Neighbor

gene id symbol gene type direction distance location
trappc8 trappc8 coding downstream 48858 63014238 ~ 63065232 (-)
LOC103046711 LOC108414824 coding downstream 106109 62979312 ~ 63007981 (-)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 coding downstream 151172 62943073 ~ 62962918 (-)
LOC103034091 NA coding downstream 296342 62798619 ~ 62817748 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding downstream 751830 62301147 ~ 62362260 (-)
lrrc66 NA coding upstream 216354 63335850 ~ 63356289 (-)
sgcb sgcb,LOC107597442,LOC107665396,LOC107718388,LOC107601954,LOC107683993,LOC107755229 coding upstream 238415 63357911 ~ 63364411 (-)
lnx1 lnx1,LOC107683953,LOC107665364 coding upstream 704376 63823872 ~ 63907665 (-)
kdr kdr coding upstream 1216217 64335713 ~ 64370564 (-)
clock clock,clocka coding upstream 1307608 64427104 ~ 64500676 (-)
G30296 NA non-coding downstream 27134 63084327 ~ 63086956 (-)
G30291 anapc4,LOC107683992,LOC107665412 non-coding downstream 44749 63066529 ~ 63069341 (-)
G30288 NA non-coding downstream 95361 63017699 ~ 63018729 (-)
G30247 NA non-coding downstream 146762 62966449 ~ 62967328 (-)
G30231 NA non-coding downstream 182326 62931118 ~ 62931764 (-)
G30286 NA non-coding upstream 6018 63125514 ~ 63134734 (-)
G30341 NA non-coding upstream 35435 63154931 ~ 63157654 (-)
G30348 NA non-coding upstream 172523 63292019 ~ 63295723 (-)
G30354 ociad2 non-coding upstream 188498 63307994 ~ 63313055 (-)
G30410 NA non-coding upstream 328394 63447890 ~ 63448572 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 1223361 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 1749212 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 2744476 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 2749346 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 2952024 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 17455 63136951 ~ 63288108 (-)
G30376 NA other upstream 210548 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 314296 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 408785 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 1655188 64774684 ~ 64799176 (-)

Expression


Co-expression Network