rasl11b (rasl11b,LOC107718428,LOC107601936)


Basic Information

Item Value
gene id rasl11b
gene name rasl11b,LOC107718428,LOC107601936
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63521545 ~ 63524944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257035.2
GAGCGGTTTGTGGGAGATCAGAACCGGAGTAAACAGCGGAGCTGAGCTCAAACAGAAGAACAGGAGCAGGGTTCAGACTGTAGAACAGATACACAGAGCTCTCACTGGAGTACCCGAGTCACTGACACCGCCGGACACACCAGAGACCCGCGTCTCCGAGCTCGACTCACCGACACCgtgtggatatatatatatatatatacatcgcCTAGAGTAGAGAGCCCGCGCGTTGTGTTCACGATGCGCCTGGTCCAGAACATGAGCACCATAGCGGAGTACCCCGCCGCCTCAGACTGCACCACCAGCCGCGTCCTCAAGATAGCCGTGATCGGGGGCAGCGGAGTCGGCAAGACCGCTCTTGTGGTTCGTTTCCTCACCAAACGCTTCATTGGTGACTACGAGAGAAACGCTGGAAACCTGTACTCCAGAGAGGTCCAGCTCGATGGAGACCAAGTGGCGATTCAGGTTCAGGACACCCCTGGAGTTCAAGTAAATGCCAACGGCCTTAGCTGCACTGATCACGTGACCCGTTCCATTCAGTGGGCCGATGCTGTAGTAATGGTGTACTCTGTGACGGACCACCGCAGCTTCGACCTAATCAGCCAGCTCCACCAGCTGGTAAGCAATGCCCACGGCGAACGCTCCAACATCCCGCCCATCATCCTGCTGGCCAACAAGGCAGACCTTCTGCATGTGAGGCGGGTAGATGCACAGCAGGGACCCCTCCTTGCCTCGGCGCTTGGCTGCTTCTTCTACGAGGTGTCGGCCAGTGAAGATTACAGTCAGGTGCATGGTGCCTTCCACAGGCTGTGCAGGGAGCTGGCCAAACAGCAGCCGCTGCCCTCCCAGCCGTCAGTGACTACTGTGGGGTCAGAAAAGAGGAGGTCTCCCCTCATCCCCAGACCAAAGTCACCCAACATGCAGGACTTAAAGAGGCGCTTCAAGCAGGCTCTTTCCGCCAAGGTGCGGACGGTGACATCCGTGTGAAGATTGAATATGGAGACTTGGCCTGGATGTGGGCCAGAGAAGACTGAAAAGCAAGAGGTCAATGGAGGGAGCTCAGCAGAGGACAGGAAGAGGAGGCTCAAAAAGCTGAAGCAGTGGTGAGTTTTCCACTTGTTCCTCAGAAGCTCGGTCGCTGATCAGCAGGCCACTTCCTAAAGAAGGTAGCTGAACTTTGACCTCCAAGCTCAACAGCCACTGTTGACCTTCGACTTGTGAACTTTCTTGCTGGTGGACAATCCACCTGTGCTGCTGTCAATCACGGAAGAGCAGATGCAGCAGGATGCTGGGAACAGGTGCCAGAAGCTGCCTTAAAATGGGAAGAATGCAAAAGATGCTCAAGACTGAATGAAAGTTAATGTACGCACACACTGCTTTATAACTGTGGACACTTCTCCTTGCAACAGGGCTTGTGAAGGACAAAGCTCTTGAGTATTTTTAGTGACTGTTATAAAAGGGGAGTGagtaattttatttcttatttttttttcttcagtcaaGGCTTTCACGCTCCCAGCAGAAGTGAACTGAAAGCGGGCATTGTTAAAGTGAGGCAGTAAAGTTTAAATGCACAAAACGTGTGTGCTTTgcttttcactcactcactcactgtgtaCATTTGTTGGTTCTGTGTAAAAATCGGATTAGTGCCaaattgtattttctttttctttctaaatgcactttaaatcaaGCCAAAGGGCTAAGGTTCATTATTTATTGGTTGCAGTCAAAAATACTGTGgttgagaaaaataaaactgtgtGAATGAATA

Function

symbol description
rasl11b Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within mesendoderm development. Predicted to be located in membrane. Is expressed in several structures, including axis; central nervous system; presumptive ectoderm; shield; and tail bud. Orthologous to human RASL11B (RAS like family 11 member B).

NR:

description
PREDICTED: ras-like protein family member 11B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048382 mesendoderm development biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07853 RASL11B; Ras-like protein family member 11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257035.2 True 1777 mRNA 0.51 4 63521545 63524944

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107601933,LOC107755228 coding upstream 142023 63365674 ~ 63379522 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 186677 63318652 ~ 63334868 (+)
ociad2 ociad2 coding upstream 206588 63307949 ~ 63314957 (+)
ociad1 NA coding upstream 225822 63290134 ~ 63295723 (+)
zar1 zar1 coding upstream 386808 63132960 ~ 63134737 (+)
fip1l1 NA coding downstream 239825 63764769 ~ 63822100 (+)
gsx2 gsx2 coding downstream 570706 64095650 ~ 64097660 (+)
LOC103022002 LOC103022002 coding downstream 577337 64102281 ~ 64104332 (+)
pdgfra pdgfra coding downstream 586775 64111719 ~ 64144324 (+)
srd5a3 NA coding downstream 869265 64394209 ~ 64397629 (+)
LOC103041812 NA non-coding upstream 52794 63466243 ~ 63468751 (+)
G30383 NA non-coding upstream 85563 63433831 ~ 63435982 (+)
LOC111191941 NA non-coding upstream 222813 63297863 ~ 63298732 (+)
G30335 NA non-coding upstream 233411 63263950 ~ 63288134 (+)
G30314 NA non-coding upstream 371330 63149666 ~ 63150215 (+)
G30393 NA non-coding downstream 2577 63527521 ~ 63550200 (+)
G30517 NA non-coding downstream 781171 64306115 ~ 64306424 (+)
G30539 NA non-coding downstream 897557 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 898565 64423509 ~ 64425402 (+)
G30543 NA non-coding downstream 929830 64454774 ~ 64456432 (+)
G30362 NA other upstream 175852 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 590412 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 668257 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 1585462 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2996494 60520342 ~ 60525051 (+)
kit kit other downstream 706300 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 1497475 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 1552836 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 1573558 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 1574347 65099291 ~ 65099362 (+)

Expression


Co-expression Network