tmem165 (tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960)


Basic Information

Item Value
gene id tmem165
gene name tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64399672 ~ 64411701 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257047.3
TAACAAGTTAGTTCCTGCTACAGCAGCGGCTGATTGCTAGCATGAAGCGGGCTAGCGGGTTGATTAGCTAGTTATCGGAGCCGCCGCTGTTTCTCTGAGATGAGCAGGAGTTAGATGGTGGTTCGGGCTCTGCTTAGCGCTTAGCTGTGTTTCTGCGCGGTGGACAGACTGTGAACATGGCTCTCCGGGGCGGCTCTCGGCGGAGCGGGGCGGGCCGGCTCTGCGGGCTGCTGGCCCTGGTCCTGCTGATCTCCGCCGGAGCCTCAGCGATTCAGGAGGAGAAGAGAGTGAACGAGGATCCGCAGCAGCATGTGGAGaaaGCTGCTACTGGCCAGCCTGCAGGTCCAGCAGTCAGTCAAGATGAGACCAGTAAAGCCAACCTGGGCTTTATCCATGCCTTTGTGGCAGCCATTTCAGTCATTATTGTTTCTGAGCTGGGAGACAAAACTTTCTTTATCGCAGCAATCATGGCCATGCGCTACAACCGGCTCACTGTCTTGGCTGGAGCTATGCTGGCTCTGGGTCTCATGACGTGCCTGTCAGTGCTGTTTGGTTATGCCACCACTATTATCCCACGGATTTATACCTACTACATCTCTACGGCACTGTTTGCCATCTTCGGAGTGAGGATGCTGAGAGAAGGATTGAGAATGAGTGCTGATGAAGGTCAAGAGGAGCTTGAAGAAGTGCAGGCTGAGATTAAGAAGAAAGATGAGGAGCTCCAACGCTATAAGCTGGCTAATGGGGCTCCGGATGTGGAGACAGGAGCAGCAGTGACCATGTTGCCTCAGAGAAAGTGGCACAGTGTGATCTCGCCCATCTTCATCCAAGCACTCACACTCACCTTCCTCGCCGAGTGGGGGGACCGCTCTCAGCTCGCTACTATTGTTCTCGCTGCACGGGAGGATCCATTTGGAGTGGCAGTGGGTGGAACTCTGGGACATTGCCTATGCACAGGTCTGGCTGTGGTTGGTGGGAGGATGGTAGCTCAGAAGATATCAGTCAGGACAGTTACCATCATCGGTGGGATCGTATTCCTTGCCTTTGCTTTTTCTGCCCTATTCATCAAGCCAGACGCTGGATTCTAACTGAGGAAGAGACTTTCTGGTGTTGTTCTGTAAATACCAGCTCAACCGTGCTCTATTCACGAAGAGGGACTGTATACAGAGGATGTATGTGAATGatgagtgtgtgagaatgtTTGTGTGAATGCAGTGTTATTGCTCATGTCTTAAAGACCCTGTCACGGAAGCTGCATTGCTTTTATatgaatttttttgtttgtattatttttttttttttttaaagatcattTATTGACCTCTAGGGAACCAGTGTGTTCAGCTGTATGTTTTCAGCGACTGCAGGTTGACCTTTTGTCAACTTCCGTGACAGGTGACCTTTAATGatcatctttttgtttgtttgtttgtttttgtttttttcctctttccctACGGTGACTCTGCTTTGTAGGTCGCTCAAATTTCCAATCAGTGTACTTGAACTTGAGCTGGGTAGTTACTGAGAACAGTGCATTGTAGATGCATTTAGTTATCAAATGTAGTTTACTTGCTGTGATGCTGCCTAGTTCTGAATATCTGATCGTGTAATGCATTTGCCCTCACTGGTGGTGTTCTACACTCATGGGACACAGTGATTTACTAAACTGCCATGTGTTTTACTGTCAGTTCATCACACAGGGCTTAGTTCAGTGTTCTTTGGTCATTGCACAACTACACATCTAGAAAGAGCAGCCAAGACCACCTCCAtctcaacccccactctgaCCTGGGACCGCATTCATTCAGCAGCCAGGAGTGAAATTTAATAAAcccaattttacatttaatcaaaAATGAGCTGATCTTCTAAAAGACCTAAACTGCCATGAACGTCAGCAGTTGGCCCAGGGAAGGTAATTTCACTTCAAGTCAACCCTGAGAactgtttctatttattattctttttttgtgcactttttctGTTTGAtcgtttttctttctcttttttttttttttttttttcttttaagtagTCCTGTAGTCCTGTCAGGGAAGACACTGACTGCtggtttttgttctttttcaagGTGACTTGACTTCATTGTCAATATTTGACAGGACTTGTCCAGGACAAGTGAATTCACTATTTAGTGGTGTGGCTGATTGTGATTATACAAGAGCAGAATCCtgtaaatactgaattaaaaccTGTCAGTCAA

Function

symbol description
tmem165 Predicted to enable calcium ion transmembrane transporter activity and manganese ion transmembrane transporter activity. Acts upstream of or within osteoblast differentiation; protein N-linked glycosylation; and skeletal system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in head; heart; and heart tube. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIk. Orthologous to human TMEM165 (transmembrane protein 165).

NR:

description
transmembrane protein 165 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257047.3 True 2224 mRNA 0.46 6 64399672 64411701

Neighbor

gene id symbol gene type direction distance location
srd5a3 NA coding upstream 2043 64394209 ~ 64397629 (+)
pdgfra pdgfra coding upstream 255348 64111719 ~ 64144324 (+)
LOC103022002 LOC103022002 coding upstream 295340 64102281 ~ 64104332 (+)
gsx2 gsx2 coding upstream 302012 64095650 ~ 64097660 (+)
fip1l1 NA coding upstream 577572 63764769 ~ 63822100 (+)
LOC103022915 NA coding downstream 568 64412269 ~ 64418443 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding downstream 160669 64572370 ~ 64589618 (+)
chst14 chst14,LOC107665414 coding downstream 179956 64591657 ~ 64602638 (+)
kiaa1211 kiaa1211 coding downstream 217472 64629173 ~ 64673511 (+)
LOC103038194 NA coding downstream 283261 64694962 ~ 64702540 (+)
G30517 NA non-coding upstream 93248 64306115 ~ 64306424 (+)
G30393 NA non-coding upstream 849472 63527521 ~ 63550200 (+)
LOC103041812 NA non-coding upstream 930921 63466243 ~ 63468751 (+)
G30383 NA non-coding upstream 963690 63433831 ~ 63435982 (+)
LOC111191941 NA non-coding upstream 1100940 63297863 ~ 63298732 (+)
G30539 NA non-coding downstream 10800 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 11808 64423509 ~ 64425402 (+)
G30543 NA non-coding downstream 43073 64454774 ~ 64456432 (+)
G30587 NA non-coding downstream 118229 64529930 ~ 64530163 (+)
G30588 LOC107659282 non-coding downstream 130414 64542115 ~ 64543421 (+)
kit kit other upstream 129977 64231244 ~ 64269695 (+)
G30362 NA other upstream 1053979 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1468539 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1546384 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2463589 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 610718 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 666079 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 686801 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 687590 65099291 ~ 65099362 (+)
G31000 NA other downstream 1417080 65828781 ~ 65837365 (+)

Expression


Co-expression Network