srd5a3


Basic Information

Item Value
gene id srd5a3
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64394209 ~ 64397629 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257048.3
GTTTCCTGTCGGGAGGGTTTCAGTGGGGCACACGGTGTTGCTAGGGGATGATGGTTGTGAGTGTTGGGTTAGTGGAGATCTGCTGGTTAGTGCTGGCTCTGGGGTTCCTCACAGCGCTCTGCCTCCACAGACTCACCCTCACACTCCCGGGACACGCAGAGCGAGTCCTGCAGGATCTGATTCGATACGGGAAAACCAAGCAGCGGCTGAAGCGCCCCGGAGTCCTGCGGCTCTTCGACCTGCCCAaaagATGGTTCTCACACTTCTATGCAGTGTCAGTCCTATGGAATGGACTTCTCATCATCCTCTCTGTCCGTAATGTGATGTTTGGTGAGGCACTTCCTGACTTCTTGACAGACGCACTCTGTCTCTTGACCGGACGTCCAAAGTCTGTGTGGAACGaaCTTCAGGTGAATATTCTAGTATTGCTTCTTCTTCTGTGGGTTCATTCTCTCAGACGCCTGCTGGAGTGCCTGTTTGTCAGTGTTTTCTCTGATGGTGTGATCCATGTAGTCCAGTATGCCTTTGGCTTGAGTTATTACATTCTATTGGGGTTGACCGTCCTGTGTGTGGAGTTCCCGCAGCCTACAAATGGTTCCTCTACTAGTTCATTTTCGTCCCTGCTCACATGGTACAATGCAGCCGGAGTCCAGCTGTTTATCTGGGCATCTCTGCTACAGCATCGCTCACTGACACTGTTGGCCAGTCTGCGCACCAGCAGCTCAGGTAAGGTGGAGACGTTGGCTCACAGGATCCCACGTGGGGGCTGGTTTGAGCTAGTGTCCTGTCCACATTATTTAGCTGAGCTGCTGATCTACGCTTCCCTGGGCGCGTTCTGCggctgtttctctctcacttggTGGCTAGTGGTGTTTTATGTTCTCTGCAATCAAGCTCTGGCTGCCAAGCTATGCCATGAGTACTACCAAAGCACATTTAAGGGATATCCACACCAGCGCAAGGCCTTCCTTCCTTTTTTGTTCTGATATGCTGTATGATAATGTTAATATTCAACAAACAATGTATAgggattttattaaattatgttaaacATTGTTTAACAAAACTATGATTTTATATAAGGTCCATTTTGCTGttattttataaagaaaattaaacaaaGCTGTTGAATCCAA

Function

NR:

description
polyprenol reductase

GO:

id name namespace
GO:0016095 polyprenol catabolic process biological_process
GO:0019348 dolichol metabolic process biological_process
GO:0006488 dolichol-linked oligosaccharide biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K12345 SRD5A3; 3-oxo-5-alpha-steroid 4-dehydrogenase 3 / polyprenol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257048.3 True 1136 mRNA 0.48 5 64394209 64397629

Neighbor

gene id symbol gene type direction distance location
pdgfra pdgfra coding upstream 249885 64111719 ~ 64144324 (+)
LOC103022002 LOC103022002 coding upstream 289877 64102281 ~ 64104332 (+)
gsx2 gsx2 coding upstream 296549 64095650 ~ 64097660 (+)
fip1l1 NA coding upstream 572109 63764769 ~ 63822100 (+)
rasl11b rasl11b,LOC107718428,LOC107601936 coding upstream 869265 63521545 ~ 63524944 (+)
tmem165 tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960 coding downstream 2043 64399672 ~ 64411701 (+)
LOC103022915 NA coding downstream 14640 64412269 ~ 64418443 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding downstream 174741 64572370 ~ 64589618 (+)
chst14 chst14,LOC107665414 coding downstream 194028 64591657 ~ 64602638 (+)
kiaa1211 kiaa1211 coding downstream 231544 64629173 ~ 64673511 (+)
G30517 NA non-coding upstream 87785 64306115 ~ 64306424 (+)
G30393 NA non-coding upstream 844009 63527521 ~ 63550200 (+)
LOC103041812 NA non-coding upstream 925458 63466243 ~ 63468751 (+)
G30383 NA non-coding upstream 958227 63433831 ~ 63435982 (+)
LOC111191941 NA non-coding upstream 1095477 63297863 ~ 63298732 (+)
G30539 NA non-coding downstream 24872 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 25880 64423509 ~ 64425402 (+)
G30543 NA non-coding downstream 57145 64454774 ~ 64456432 (+)
G30587 NA non-coding downstream 132301 64529930 ~ 64530163 (+)
G30588 LOC107659282 non-coding downstream 144486 64542115 ~ 64543421 (+)
kit kit other upstream 124514 64231244 ~ 64269695 (+)
G30362 NA other upstream 1048516 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1463076 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1540921 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2458126 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 624790 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 680151 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 700873 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 701662 65099291 ~ 65099362 (+)
G31000 NA other downstream 1431152 65828781 ~ 65837365 (+)

Expression


Co-expression Network