LOC103022002 (LOC103022002)


Basic Information

Item Value
gene id LOC103022002
gene name LOC103022002
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64102281 ~ 64104332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257058.2
GTGACCCggcacaggtacacacacaggTGCTTAggtgtgtgtacgagtgtgtatGACCACACTCGGAGCCGCACGCGCGCGATGGACTCTCTGGATGTGTTCTACAGTGGAGACTACGACCCGCACGCTTCAGTTCCCTACGAGCGCGAGCCGCCCGCGTGTCGCTTCTCTCGCGCTGCTGAGTCGCACGCGCTGTATCCCGACCCCCAGTACCAAGCGCTCCACCTCCAGCACACACAGCCTGCCGAGTACTCACCCTGCGACCTGCCGGCCTGCCAGCACGCGGGAGGAGAGCAGGACCACCAGCTCGGCTTGGGGTCTCCTGAGAAAGGACCAGAGGGTGAAGAGTATCCGCCGGTAACCGAGCAGAGCCGGGGAGGGGAGGAGGGAACAGGACACGCAGCCTTTCCATGGATGAGAGCGCTGAGAACACAGGCCTGCCAAGCACCTGTTACAGGTTACTTCTGTGAAGACTCGGAGGAGCATAAGCGCAGCCGGACAGCATATAGCAGAGcgcagctgctggagctggaaaaGGAGTTCCTCTTCAACAGGTACATCTCCAGACCGCGCAGGTATGAACTGGCCACCAGTCTCAATCTCACCGAGCGCCACATCAAGATCTGGTTCCAGAACAGAAGGATGAAGTGGAAAAAAGAGGAGGCGAAGAAGCGTGGAAGTAAAGAAAGTAAAGAGTGCAAAGAGCACCATGTGGACTCCACCAGCACCACATGAGCGAAGAGACTGAATGGACA

Function

NR:

description
pancreas/duodenum homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0071907 determination of digestive tract left/right asymmetry biological_process
GO:0071910 determination of liver left/right asymmetry biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257058.2 True 755 mRNA 0.59 2 64102281 64104332

Neighbor

gene id symbol gene type direction distance location
gsx2 gsx2 coding upstream 4621 64095650 ~ 64097660 (+)
fip1l1 NA coding upstream 280181 63764769 ~ 63822100 (+)
rasl11b rasl11b,LOC107718428,LOC107601936 coding upstream 577337 63521545 ~ 63524944 (+)
spata18 spata18,LOC107683994,LOC107601933,LOC107755228 coding upstream 722759 63365674 ~ 63379522 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 767413 63318652 ~ 63334868 (+)
pdgfra pdgfra coding downstream 7387 64111719 ~ 64144324 (+)
srd5a3 NA coding downstream 289877 64394209 ~ 64397629 (+)
tmem165 tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960 coding downstream 295340 64399672 ~ 64411701 (+)
LOC103022915 NA coding downstream 307937 64412269 ~ 64418443 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding downstream 468038 64572370 ~ 64589618 (+)
G30393 NA non-coding upstream 552081 63527521 ~ 63550200 (+)
LOC103041812 NA non-coding upstream 633530 63466243 ~ 63468751 (+)
G30383 NA non-coding upstream 666299 63433831 ~ 63435982 (+)
LOC111191941 NA non-coding upstream 803549 63297863 ~ 63298732 (+)
G30335 NA non-coding upstream 814147 63263950 ~ 63288134 (+)
G30517 NA non-coding downstream 201783 64306115 ~ 64306424 (+)
G30539 NA non-coding downstream 318169 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 319177 64423509 ~ 64425402 (+)
G30543 NA non-coding downstream 350442 64454774 ~ 64456432 (+)
G30587 NA non-coding downstream 425598 64529930 ~ 64530163 (+)
G30362 NA other upstream 756588 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1171148 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1248993 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2166198 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 3577230 60520342 ~ 60525051 (+)
kit kit other downstream 126912 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 918087 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 973448 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 994170 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 994959 65099291 ~ 65099362 (+)

Expression


Co-expression Network