LOC103033450 (foxq1)


Basic Information

Item Value
gene id LOC103033450
gene name foxq1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58417381 ~ 58418846 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258175.3
GTCTTCTGGCTCACACTTGTTCCGTGAAAGCAGCGTGCGCgcgctgtgtgtttttattttactattttgtcCTCTCGTGGATGAGCACAGTGTGCCGCGTTCACAGCAGGCGCGTGCCGGTATGAAGCTGGAGGTTTTCTCTGTGGCCGCGATGTCGCCAGACTCTCCGCTGTCCGCTGAGGACGAGCTAGGCTCGGACGGGGACTTCGCAGCATGCAGTCCGGCCCCGGAACCAGCGACACCGGTGCTAACACCGTCCGAGGAGGCGGAGGAAGCGGGCGCTTCAGACAGCAAGCCGAAGGCGTACGCGCGCCGTCCCAAGCCCCCGTATTCATACATCGCCCTGATCGCCATGGCCATCCGGGACTCGAGCTCCGGGCGCCTCACGCTGGCCGAGATAAACGACTACCTGATGAAGAAGTTCCCGTTTTTCCGCGGCTCCTACACGGGCTGGCGAAACTCGGTGCGCCACAACCTGTCGCTCAATGACTGCTTCCTCAAAGTCCTGCGCGACCCCTCGCGCCCCTGGGGCAAGGACAACTACTGGATGCTGAACCCGCACAGCGAGTACACGTTTGCGGACGGTGTGTTCCGCCGCCGGAGGAAGCGCATCGGCAAGAAGACCGGCAGGGACCCTGGGTCACGGGAGCGCGCTCTCCAACGCTTACCTGCCGACAGTGCAGCCGGAGGCGCGCGCTTCACCGGCCCCTTcgccatcgagagcatcctcAGCAAGCCGTCGTTCCGGCGCAGGGAGCGCGCGGAGGACTTCGCCAGCCTCACGTTACAGTTTGCACCGTTTCTCATGAACTGCCAGGCGCTCCACGCGCCCCCTACGCCGCTCTCCAGCCTCGCGCCTCAGCCGGCCTTCCTGAGCCCCGCGCCACGATACACGCCTCCTTACTGCGCTCCACGAGAGACCCCTTACCACCCCTTCAGAATTGACTCTCTGCTGTCCTGAggacgaacacacacacaatcataaaGGTCTACAGTCATcacaacacaaacatacacgACAAGACAAGTTTTGGATGAGACAAGGATACACACGGACATGATCGCGCGCAAGAGCGCACACACGCACATGACCAGGCGAGATGTGTTTATTTGCATGAGAAAGTTACAATAGAAACACtaagaaccacacacacacactcattatgTGCACTTTTCTGTCGAGTGATGTGAATCATTTAGAACAcattgctgtaaaattgactcACACAGTGACTGTTCTGCGTGTTTGGTACTGATTCATTTCCACTTGTGTAAGACAGTGTCAGAAGTACGGTTTATTATGTGTATTTAAGTGTATATAGTTTGTACCGTGATGTTGAAGTTGttgataatttttaaataatgtgtaataatgtataatGAGCGCGGGCGTTTTAGCTGCTGCGGAGctgctcagagagagagagactggagtTCCTTTGttaataaagattaaaaaaaaaaga

Function

symbol description
foxq1 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of neuron apoptotic process. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
forkhead box protein Q1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09410 FOXQ, HFH1; forkhead box protein Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258175.3 True 1466 mRNA 0.55 1 58417381 58418846

Neighbor

gene id symbol gene type direction distance location
LOC103033774 foxf2,LOC104946676 coding downstream 6800 58407436 ~ 58410581 (-)
LOC103034096 foxc1 coding downstream 23023 58392121 ~ 58394358 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding downstream 143099 58266680 ~ 58274282 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding downstream 183107 58227206 ~ 58234274 (-)
LOC103037877 LOC108411323 coding downstream 194436 58210877 ~ 58222945 (-)
LOC103032621 irf4,LOC108257893 coding upstream 66762 58485608 ~ 58495458 (-)
LOC103032305 LOC103032305,LOC108444535 coding upstream 79901 58498747 ~ 58502531 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 163882 58582728 ~ 58593926 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 516046 58934892 ~ 58942197 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding upstream 528807 58947653 ~ 58952885 (-)
G29162 NA non-coding downstream 1948 58415164 ~ 58415433 (-)
G29131 gmds,LOC107711642 non-coding downstream 31928 58312814 ~ 58385453 (-)
LOC103035795 NA non-coding downstream 153263 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 292816 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 359921 58002119 ~ 58057460 (-)
G29194 NA non-coding upstream 101791 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 250448 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 355669 58774515 ~ 58774951 (-)
G29252 NA non-coding upstream 360209 58779055 ~ 58779986 (-)
G29254 NA non-coding upstream 361358 58780204 ~ 58780550 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 242677 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 421905 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 576063 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1722546 56640351 ~ 56694835 (-)
G28536 NA other downstream 2600783 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 514117 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 579695 58998541 ~ 59085886 (-)
G29478 NA other upstream 1018754 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1088080 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1730551 60149397 ~ 60162066 (-)

Expression


Co-expression Network