LOC103033774 (foxf2,LOC104946676)


Basic Information

Item Value
gene id LOC103033774
gene name foxf2,LOC104946676
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58407436 ~ 58410581 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258176.3
GGGTTGGGGGTTCAGAGTGATGGGTTACCGCCTCGTGTTTAGCTAAGGGGGTAAGACTCTCCGTTTCTTTCTCACAGAGGGATTATGATCATCCGGTTCAGCGCAGAACGTCTAAAACTCTCCATATCAGGGCGGGATGTGACAGTGGCGCTGGGAGGCTTCAACTAGATCCACCAGCGTTTCTGTGCGACTGGACTGTCAACACTGTGGCCAGTGGGGATGTAAACCACCagtgtggagtttttttttcttctaaagaGTGAAGCGGCGTTCAGTTAGCATGTATTAGCCCACTCGCCTCGCTGCTGCAAGTTTAGCTTTTGTTTGCAACACCTTCTCAAAAGGCCATTGGTCCAGAAAGATGACGACCGAGGACTCCATGACAGATCTCGTGAGGACTGACTCAGTCTCAGCGATGGACCCCAGTCTAATAACCGGCTTGGAGAGCCAAGACACTCCACCCAAAGGCAAAAAGGCCAATTCTGGACTGCGGCGCCCCGAAAAGCCCCCTTACTCCTATATTGCGCTTATAGTCATGGCCATCCAGAGCGCTCCGGCCAAACGCCTGACCCTAAGTGAGATCTACCAGTTCCTGCAGGCGCGCTTTCCTTTCTTCCGCGGATCTTATCAGGGCTGGAAAAACTCCGTGCGCCACAACTTGTCCCTCAACGAGTGCTTTATTAAGCTGCCCAAAGGCCTGGGCCGCCCCGGGAAAGGCCATTACTGGACCATAGATCCTTCCAGCGAGTTCATGTTTGAGGAGGGCTCTTTTCGACGCAGACCACGGGGCTTTCGGAGAAAATGCCAGGTCCTTAAACCCATGTATCGGATGATGAACGGCCTCGGACTCGGTTCAGCCATTTTGCCCCAAGGCTTCGACTTCCAAACGCAATCCTGCCACGCAAATGGGTACAATCTGGATATGATGACTGGGAACGTCACCAGCAGCGGCTATGATCCACTGAGCATCGGTCATTATGGACAGCATATGCCCTCCAGCCAGAGCTCCACTTTGGCGAGCTGCTCGTTGGCGATGAGTGGAGACTATGGAGGGAACAGTCCAGCTCCTGCTTCCCCTGCAATAGCGAGCCACCCTCAGTACTCTGGAGCATCTCCACCCTGGCCTTCCTCTAGTTCTCCTTACCTGAAACAGCCTCCACTTAGTTCTAGCAGCCCGGGGTCATCAGCTCTCCACCACAGCATCTCACCATACCACCACATGGAGCAGGCCTATCTCCAACCCAGCTCAAGAAACACTGCAGACATGGCAGTGGGGGTATCGTGCTACCAGGCCCACTCCTCTCCAGTGACCGAACGAAAGGACTTTCTATTAAATTTCAACGGCATCCCATCGCTCCCTTCATCTGCTAGTGGATattaccatcaccatcacctccatcatcaccaccagAGCGCTCACCAAGACGTTAAACCGTGTGTGATGTGAAAGTGAAGTTGCTGATCGGAAGCGCACATATGGCTGTACCAGGACACACTGCGCACTGAACCCGGGGGAGGCCAGCACTGATATTCATTTAGCAAAGGAATGTTTAAATTtatgattgttttatttgtaaggtaACTGTTCTTGTactctttaataaaatgtataaatata

Function

symbol description
foxf2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including genitalia development; regulation of cellular protein metabolic process; and roof of mouth development. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex.

NR:

description
PREDICTED: forkhead box protein F2

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258176.3 True 1618 mRNA 0.52 2 58407436 58410581

Neighbor

gene id symbol gene type direction distance location
LOC103034096 foxc1 coding downstream 13078 58392121 ~ 58394358 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding downstream 133154 58266680 ~ 58274282 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding downstream 173162 58227206 ~ 58234274 (-)
LOC103037877 LOC108411323 coding downstream 184491 58210877 ~ 58222945 (-)
LOC103038188 LOC108411316 coding downstream 209236 58192628 ~ 58198200 (-)
LOC103033450 foxq1 coding upstream 6800 58417381 ~ 58418846 (-)
LOC103032621 irf4,LOC108257893 coding upstream 75027 58485608 ~ 58495458 (-)
LOC103032305 LOC103032305,LOC108444535 coding upstream 88166 58498747 ~ 58502531 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 172147 58582728 ~ 58593926 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 524311 58934892 ~ 58942197 (-)
G29131 gmds,LOC107711642 non-coding downstream 21983 58312814 ~ 58385453 (-)
LOC103035795 NA non-coding downstream 143318 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 282871 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 349976 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 413323 57992403 ~ 57994113 (-)
G29162 NA non-coding upstream 4583 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 110056 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 258713 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 363934 58774515 ~ 58774951 (-)
G29252 NA non-coding upstream 368474 58779055 ~ 58779986 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 232732 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 411960 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 566118 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1712601 56640351 ~ 56694835 (-)
G28536 NA other downstream 2590838 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 522382 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 587960 58998541 ~ 59085886 (-)
G29478 NA other upstream 1027019 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1096345 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1738816 60149397 ~ 60162066 (-)

Expression


Co-expression Network