LOC103034096 (foxc1)


Basic Information

Item Value
gene id LOC103034096
gene name foxc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58392121 ~ 58394358 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258177.3
TTGctcttttacttattttatccATCATTTTCTGAATTCGTAtaatatgtttagtaaaatgttCAAGTACTTCAACACAATTCTCGAATTTTGTGTCAGTGGTCGTTTGCCTGCCTTGCCATATCCCTCCTTTTTTTATACAGCTGGCCGGTCGTATATATTAACAAGCAGTTCGCCCAATCCGATGTCAGTAGCAGGATTCTAGGACCAATCCTAGAACCCAACAATGGCAGGTCCAGATGTGTGTTGTAAGAATACGGGTGGGAAAAATGTAATGGGTCAACCACTTTTCTCCACACATATAAGTCTGAACTCCCATTGGCAGAGGCGCTCAGCTGGGGGAGGAGCGCGCGCGCACACGCACACCCACATGCACACGCACGCGGCCAAAAAGGCAGcacctttttttccttttcgtCCAAAAGTGACGGATGCTTGGAGTTCATAATTTTTCCCTCCTCCTGGTGATTTTATCCACgttacacatttttttctgaaacgAGAAGTAGAGAGTGGACTAAGACTCGCTTCACTTCAAACTACCAAAGTTTGAGAAGGGACTCTCTCGTTCAAGCACGCTCCGGAGAAACCTTTTTCCcaagtttgttttgtttgtttgttgttttgatgTTGTGAGTGGAGTTCCTGTGTGTCAGCGCGTTCACGTAACGGAGTGCGCGATGCAGGCGCGCTACCCGGTACCCAGTCCCAGCTCCTTGGGTGTTGTGCCGTACATCACCGGTGAGCAGGGCTACTACCGGGCGGCAGCTGGGGGCGGGGGCGCCGGCTACACGGGCATCCCGTCGCCCATGAGCGTTTACACGCACACGGCGCACGAGCAGTACGCATACGGCCCGTACGTGCACCACCAGCAACAGCACCACCTTCCccaccagcagcaccagcagccgTCCCCACTGCAGCCCAAGGACGCGGTGAAGCCCCCGTACAGCTACATCGCGCTCATCACCATGGCCATCCAGAGCTCGGCGGAGAAGCGCGTGACGCTCAACGGCATCTACCAGTTCATTATGGAGCGCTTCCCGTTCTACCGCGAGAACAAGCAGGGCTGGCAGAACAGCATCCGCCACAACCTGAGCCTCAACGAGTGCTTCGTCAAAGTGCCGCGCGACGACAAGAAGCCCGGCAAGGGCAGCTACTGGACGCTGGACCCGGACTCCTACAACATGTTCGAGAATGGCAGCTTCCTGCGGCGCCGGCGGCGCTTCAAGAAGAAGGACGTGCTGCGGGACAAGGAGGAGCGCGCGCCGCCGCGCCACGACGAGCGCCGTGAACGctcggaggaggaggacgagcaCGAGGACACAAcgcaggaggagaaggaggatgaggaggCCCTCCGAGCCGCAGCGGTGAAACTCGGGGAGGTGAAGACTGAGAGTGGCGCGTGCACGCCGCCACCGCAGACGCCGCACGTCGCTTCCACGCTGCTTGCGTGCGTGACCAAGAGCGAGAGCCCGGAGGGTGGCAGCCCGCGCTTTGCCACAGCAGACGGTGTGGCCTCGTTACCCGCGCACTACAGCCCGCCCTGCGGAGGCATAGCGGCGGCGTACGCGTACGCCACAGAGCGCGTGCACGAGGacgcagcggcagcagcagggCCGGATTACTTGTGCCAAAGCCGGCTTGCACCCTGGTGCTTGGGCCAAAGCGCGAGCATGATGGGaggacaacagcagcagcaacaacaacagcaacaacaacagcaacaacaacatcaAGGAGGCTTTCCCAGCTTCCAGGCTCTGAACGGCACCTCGCCGGTAACCGGCTGCCAGAGCGCGTTCCCCGCCGCGCCGCCGCCGCTCTACCGGGGAGCTGGAGCTTTCGTGTATGACTGCAGCAAGTTCTGatttacataaacacacacatactcacacaaaCAGGACTACAAGAGCACTATGGGTTATCCTCTTCAGTGTTAAACGAGGAGGTTGGAGTTGGAGGAGGGAGCGGGAGCGCACTGCTATGTGTCCGCGGTGAGTAGAGGAGGCCGAAGGCGCTCAGGACTCCTCTCCTCTCCGCGCTCCTTCTTTCACTAATTTATTATTTCACTCTCTGAGCGGCTCTGTCTTTATTTATACACACCTTCACATGGACCGTGACTGTGCAggaaacctttattttaattactccagatgttattattattaactttattattattattattatttggtaaaTAAATGTGCCTTCCTGTTGAAGTTAAACCCTCGA

Function

symbol description
foxc1 Enables DNA binding activity, bending; DNA-binding transcription activator activity, RNA polymerase II-specific; and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including cellular response to epidermal growth factor stimulus; odontogenesis of dentin-containing tooth; and positive regulation of cell differentiation. Acts upstream of or within eye development; heart development; and positive regulation of transcription, DNA-templated. Located in cytosol; heterochromatin; and nucleoplasm. Implicated in Axenfeld-Rieger syndrome; Axenfeld-Rieger syndrome type 3; anterior segment dysgenesis 3; and glaucoma. Biomarker of congestive heart failure and invasive ductal carcinoma.

NR:

description
PREDICTED: forkhead box protein C1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043010 camera-type eye development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0043114 regulation of vascular permeability biological_process
GO:0001568 blood vessel development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09396 FOXC; forkhead box protein C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258177.3 True 2238 mRNA 0.55 1 58392121 58394358

Neighbor

gene id symbol gene type direction distance location
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding downstream 117839 58266680 ~ 58274282 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding downstream 157847 58227206 ~ 58234274 (-)
LOC103037877 LOC108411323 coding downstream 169176 58210877 ~ 58222945 (-)
LOC103038188 LOC108411316 coding downstream 193921 58192628 ~ 58198200 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 202392 58175809 ~ 58189729 (-)
LOC103033774 foxf2,LOC104946676 coding upstream 13078 58407436 ~ 58410581 (-)
LOC103033450 foxq1 coding upstream 23023 58417381 ~ 58418846 (-)
LOC103032621 irf4,LOC108257893 coding upstream 91250 58485608 ~ 58495458 (-)
LOC103032305 LOC103032305,LOC108444535 coding upstream 104389 58498747 ~ 58502531 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 188370 58582728 ~ 58593926 (-)
G29131 gmds,LOC107711642 non-coding downstream 6668 58312814 ~ 58385453 (-)
LOC103035795 NA non-coding downstream 128003 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 267556 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 334661 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 398008 57992403 ~ 57994113 (-)
G29162 NA non-coding upstream 20806 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 126279 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 274936 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 380157 58774515 ~ 58774951 (-)
G29252 NA non-coding upstream 384697 58779055 ~ 58779986 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 217417 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 396645 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 550803 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1697286 56640351 ~ 56694835 (-)
G28536 NA other downstream 2575523 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 538605 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 604183 58998541 ~ 59085886 (-)
G29478 NA other upstream 1043242 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1112568 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1755039 60149397 ~ 60162066 (-)

Expression


Co-expression Network