LOC103037877 (LOC108411323)


Basic Information

Item Value
gene id LOC103037877
gene name LOC108411323
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58210877 ~ 58222945 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258191.3
GTTCGCGTAGCTTCTTCACTCCAGCGAGAGTTTCGCTCGCTCGCGGTTTTCGAATTCAGCGACCGTGTTTTCCGCTGTAAATAATGTTTAGACTCCGGGTTAAAGGGGGGATGCGCGATTTAGCGACCAAACTAAACCAGCAGCGGCACCGTTATCTGATACTGCGAGAGAATGTAGCGACCGCTCGAAGACACCGGGCAGATTAATCCGTACTTTCTCCGACTTCTCTAGGGGTAGAGTTTAGTCAGTGAGTCGGGGTGTCTGAGGCGACGGGCAGCGCTCAGTCCAGTGTTTAGTGTTCAGAGTTTGAGTCAGTACAGCGCGGGCACACCACCGAGCTGGGCTTAGCCAAACATTATGGTATGGGTCAAAGGGATGTTGTACCACTGGAGACGTccatgaaaagaaaaagagggctTCACACTGCTTCAATGTGTCGGCTGGATGTGGACTCCGCGGTGGCTGTGCTGAAGAATGAAGTTGAGCCCGGCGAAGGAGATGCCCTTTCCTCTTCAagGTACATGCTGGGCCGTGGAGTAAAACGCAAATTAAGTGACTGCGAGGACCCTGTGCTGGGCCTTCCGTACCCCCAGCAGCGGCAGCTGGTGCTGGACCTGTGCCTGGACAAACTGCAGAGCTGCCAGCGCCGCGCTGAACCCAGCCTTCACCGCTCAGTCCTGCTGGCAAACACCCTTCGGCAGATCCAGCAGGAGATGAGACTGGAGGGGAGAAACTGCTTGCCTCCAGCTCCACCTGCCCCTACGCTCCTTCCTGCCGCCACCCCACGCCACATCCCCGAGCTGCCGCCTGTGTCTTTAGACTGCCCTCCGCTCCTTAATGGATCACTGTCCCCATCTGCTTCCCTGGCAACAAGTGAGGATGGCGAGGCCCAGTTAGACTGTGTTGAAAGCAAACCACTGTATACATCCCTCTCCAACGAGGTTGATGGGAGGCAATCAGATTTACTGTTTGGCTCATTTGAGATCACTAATTCCACCAGCTATTTGACAGACTTGGCTCTGGATGACATCTTTGAAGACATTGACACATCTATGTATGATTCGTCTGATATCTCTGTGCTAGCAATCCCTGCCACACGAGGCACTAGTGCAGCCTCTGGGACAGGAGATGAAGGTCTCAAGAACTTTTCAAGCTGCACCCCAAACACCTTGCAGCTCTGCCTCTCTGACCTTAATGACTTGGACCACATTATGGAGATCCTTGTGCGCTCCTGAACCACTTTACACATGCAATCCTCTCTCAGATAGCCATCAGTGTTTTCATGGGAATCTGAATAATGAACTCTTTCATTTGAgaagaaatttttttttatttatttttgtacaaaGAACTGATATATTTATAAGAGGAAAAAGACTTGCATGACACATACTTACTGTAGGATAAATGCACATTATTCTGACTAGGTGGTCAAGCTTTGGCAGCCATCTTTCATATTTAAGCAAACTAAGAATTATATGCAGGGACTTCAATTATTGAGGCAAAGTATTACCATTGAGACTTATTTATACTGGATTGCCCTTTTCAATGGATTTTGAAGATAAAAAGCTATGTGGATTATGTGGACATACAAAAGCATTTTGAAAAGGCTTTTATGTTTGTGAACCAACCCCACAAATTTTTCTCAAGCATTACTTTTACTGTCCTTACAGTGGATCATAACGTGCACActtaacactcacacactacctCTCGAAAAATCAAGCGcaagctctctttctctctctctctgtatagtCATTGTTACAGCTGTCTTTCAGTAGTTGTTTTTCAATAccatttggggaaaaaaaactgataatgGTCTATATCCGTCTCGACCTGTGAAGGACCTTCGCCTACCTTCCCctaggagagagaaagtgtcAGTCCAAAGTATCTGAAAAGGTATCTTTCAATAGTTCCTTTcagttttttgcattttctctcACTTTGTTGGATCTTTAACGGGAAGGAATAATGTCCTTTCTTTTTTGAAGTTGTATTTTCTCCTGTTTAACTTCTTTCTACTCCTGTGATTGTCAGACGCTATTGAACCCCTCATATAAACTTAGTGCCTACAATGGAGGACGAAGACTGGCGTTGGTGGAAGTGCACACTGTGGACCCACACATCGACTTGCCTGAACCTGTTTCTCTAATCCCACTATTTCAGTCTATTTTCTATGCTGATTGTGCTTTTCTTTTTCACTCTTAAGTAGTATTTATTTGTCTTCTGAAGAAGCCATGTCCTCAGATGTTTTACACGTCTACTTGCAGCCCTTAAAATGTTTCCTCTGGCACAAAGATGACCAGTGACTCTCATTCAAACATGATTGTGGATCTTGTGGTCAAGATGACCGAGACAGAATGTCCAACCTTGTATCCTCAGACATGGGGCTGTATCCAAATCCCTTTGCTTTTGACTTTACTGCTTGACATGAAGTATGAGACAGTTTAAGGCCTGCTGCACTGGTCTCTAATGGTCTGTGTTAAAATGCTTTCATTTTCATGGTTGCTGGACCCAACATGCGTGCTTCGAGCTTTCTGTATAAAAGTAAGGATTCACCAATCTGATACTAGATGCTGGTTTTATTGAATGGATTCATAATTGCTGGATGCAAGATTTTAAACAATTTGGTGCATGTCAGGTACTGGTGCATCCCTGCCTAAAAGGGTCAGTTTTACTAACCTTAGACTACAGCAAGGAGGAATCCTGTGTAATAAGCATAGTGTTTGTACTGAGAGGGGAGATGGTAGAGGGGGAGGGGAAAGAgcataggagagagagagagaagagagagagagattaggagGGGGTTAAAGCTCGAAGCTCCTGTCACGCGGAGGCTCTTGCTTGTGGAAAAGGCCACATTGAGAGTTTCACAACAACAgctggtatgtgtgtgtgtgtgcctgtacacatttgtgtgtgtgtcagtgccAAACCCCACCCCCCAAAAAGGGCCCCAAGGCCTCCATTCTCCTCCCAGCCAATGACCATTAGTTAGGGGAGGAGTCACAAGCTGCTCCAAGTAAAGCGCCTTCCCTTCTCAGGACTCTCACTTGTACTACCAAGACATATACTTCAAGAAATATCCATATGTTTTGATGCTTacccaaaaaatacatttgtctcAAAATCTTTTCTTAAGTACCAAATAAAACCCAGCAATAGCTGGCTAAAAACTAGCGTTATGGGGTTAAGagtttaggatttttttttttttttttttaactattacaGAAAATTCATCTTAGATTTTTAACAATTGGGTGTGGCAAAAACAGAGATAGAGACTGGTAATTACCTAGCAGTAGTCTGTGATGGATTTTGTCCCCTCCCATCTCTTCCTTTAACTCAGGCTGGCAAACATCCTCCCCACCCCCCTCAGGAGACAGCAGGCAGAGCCACAGAGAAATTTGACCCCTGATGAAGTTTACACTGGGTTTTATGGTAATTTGCTTTGAGATGGGGTAAAAGAAGACAATAAACCAGAGACTTGTTTAATCACACCAAGACaccttttttctgtcttttacaAGTGGTTTCTGTTTGATGGTGAGAGCTCTGTATCAAAGTGTATAGCTTTGTAAgcttatgtttttgttttgtttttgttcgtTTTGAgcatataactatatatatatttgtatttcttttttttccacgtgagtttctattttaatttcttGGTCTGATGACCAAAGATTGTGagataatttattacatttatttaagagTGGAAAACTGTAGGTTTTGGTCTCGCTCCAGGACAATTAGTTTGTCACGTAGCAGGATGTCTGCTTCAcctcttttaaataataattacataatgtgtgtaaatagtttattcAGATTATGAagagattttttattattgaaagtatttgtaaaagtatgaaaatgtgttcatttgaaTGACTGTGGGGGATCCTTTTAACGTGTATTTTAGTCTGATATTCTTCCTTGGACCAGGCAGTTAATCTGGCAGCTCCTTAcactgttttcacactgaaatgACTGACTGCATTTAGGTTAAAAGGAAGCGTGTTGGCCTTACTGGTGTACTGTCAGTGAAAtattattagcatttttttcccccatttccCCATTTGCTCAAGACTCTATCCTCTCTGTTTTAAGGAGTGGTTTAAGGTCGCTGTTTTCAGGATTTTATTTGGTATCAACAACAAACAGCTGCCTGATTTTCATTTATTCAGAGAGCTGGGAAACTACTCAGTACCATCATAGCACATGTAAAAAGCAGAGCTTCACTATTGAACTGCCTTTTGAAGATCCATAGTAAAGCACCAACTGCACAAAAAGTTCCTTTAAAAAGAGTATATGAAAAAACATCCTGAGTGAAAGAGTTATGTTTAATTAAGTATTCTCAACAtggttattttaaaaagcatcaaatgATTAGCTTTAACCATTTGTCATATTTATAGTTGGCCATTTTAGCAAAGTTTAATAAATTATCCTAATGAAATTGTAAAATGGAAAAACCTCAAATGTCACTTTTGTCCCAAGTGCAATATGAACATGAAGCGCTGTCTGACCTATTTGCAAATAATACCAATATGTTTAAGTTtatatgaatacatttttaaataatggactGAAGACTCTGCAGcccaaaatgcattgttttCAGACTCTTTGCTCAGTCTGGTCTGTAGCTTGGTTTATAGCTTTCTGTTGTGTAAATAATGAAGCCTCTTTTTTGCATCAGTCATATTCTATGCAATGCTACTGTAGCAGGTCAGTATGTcggaataaaaactgaaataagatgaa

Function

NR:

description
PREDICTED: cell division cycle-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258191.3 True 4803 mRNA 0.42 2 58210877 58222945

Neighbor

gene id symbol gene type direction distance location
LOC103038188 LOC108411316 coding downstream 12677 58192628 ~ 58198200 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 21148 58175809 ~ 58189729 (-)
chga chga coding downstream 61130 58136609 ~ 58149747 (-)
tmem251 tmem251 coding downstream 127394 58081670 ~ 58083483 (-)
LOC103040793 LOC108411326,LOC107721373,LOC108257828,LOC107659193 coding downstream 134312 58060823 ~ 58076565 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding upstream 4261 58227206 ~ 58234274 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding upstream 43735 58266680 ~ 58274282 (-)
LOC103034096 foxc1 coding upstream 169176 58392121 ~ 58394358 (-)
LOC103033774 foxf2,LOC104946676 coding upstream 184491 58407436 ~ 58410581 (-)
LOC103033450 foxq1 coding upstream 194436 58417381 ~ 58418846 (-)
G29108 NA non-coding downstream 86312 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 153417 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 216764 57992403 ~ 57994113 (-)
G28997 NA non-coding downstream 334132 57876271 ~ 57876745 (-)
LOC111189782 NA non-coding downstream 357119 57849734 ~ 57853758 (-)
LOC103035795 NA non-coding upstream 40299 58263244 ~ 58264118 (-)
G29131 gmds,LOC107711642 non-coding upstream 89869 58312814 ~ 58385453 (-)
G29162 NA non-coding upstream 192219 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 297692 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 446349 58669294 ~ 58705165 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 36173 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 215401 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 369559 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1516042 56640351 ~ 56694835 (-)
G28536 NA other downstream 2394279 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 710018 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 775596 58998541 ~ 59085886 (-)
G29478 NA other upstream 1214655 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1283981 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1926452 60149397 ~ 60162066 (-)

Expression


Co-expression Network