LOC103038188 (LOC108411316)


Basic Information

Item Value
gene id LOC103038188
gene name LOC108411316
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58192628 ~ 58198200 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258192.3
TAAACGACCCTCAGGGAGCAGAGAGAGGACAACCTTTGGCCGGGAGAGGAAACCCTGTCAGACCTCCTGAGTTCAGACAGTTTATCCTGAAGCTGATCTAGATTAACTGATTAGTGTGTTAATAGTTGTGTTACTCTCGCTACAGAGTTACTGTAGCTGAAACTTCTCTACGGTGGAGGGTTAAAGCTAACCTAGTCGTTACTGTGTCGGTGTAGCTAAAGGGGGGTTGGCTAGCTGAAAGCTAAAGCTCGCTATTTACAGCGTTTGCGTTTTTCTAACAGCCCCTCAGTCAGTCAGCTCGTCAGTGTCTCCGCGCTGCttcagctgctgctggtggtcTGTCATGGCGAAGTGGGGTGAGGGAGACCCGCGCTGGATCGTGGAGGAAAGAGCAGATGCTACTAACGTCAACAACTGGCACTGGACAGAACGTGATGCCTCAAGCTGGTCACAGGAAGTACTGAATGAGCTTCTTCTGAGGGTCCATGTGGAGGGTGAGGATGGAGTCTGCCAAATCACAGATGTCAGCAAGATTGAAGGAGAGGCCTCCATTAACAACCGCAAAGGAAAACTGATCTTCTTCTACGAGTGGGACATTAAAGCCTCGTGGACTGGAACCTCGAAAAATGGAATTAAGTATAAGGGGAATATAGAAATCCCAAACCTCTCTGATGAAAATGACATGGACGACCTGGATATACGTGTTACAGCTTGCAAAGACCAGCCAACTACTCCATTGACTGACTTCATGAAAAAGATGGGGGTAAAGGAAATTAAGTTGGCCCTAGCAGGCTACGTCTCACACCTGAAAAAAGAATTCTCCCAGGGTATGATACTACCGACTGCAAGTGAAGACAACAAACagcatgtacagaaaaagatAAAAGTGGATAAAATTCAGCTTGACTCCTCACCCACAACTAAAGCTTCCAGTTCTGGAGTAAAAATCTCCACTGTCAAGTTTAATTTGAAAGAGACCTTTTTGACCTCAGCAGAGGAGCTTTACAGAGTCTTTCTCAACCAAGAGATGGTTCAGGCATTCACACACCTAGCTGCTGTTGTAGAAGGGGAAAGGGGAGGCAAGTTTCGGCTGATGGAGGGTAACGTCCACGGAGAGTTTGCTGAGCTGaTCCCAGATCAGAAGATTGTCATGAGATGGAGATTTTCATCTTGGCCTGCAGGACACTATTCAGTTGTCACACTGAATTTCACTGACCAGGGCAGTGAGACAGAATTGAATCTGGAAGCAAAAGGTGTTCCCACCAATGAGGAAGAGAGAATGAAGCAGGGATGGCAGAGATACTACTTTGATGCCATTAAACAGACATTTGGTTATGGAGTCAGAATCTTTTAAACAGAGTTTTTCTCTACACAATTTCAACCAACCAGCAATAGTAAATCACCTGTATGTTATATCTCCTGTGTGCCTATCAAACTCTCATTTGCTCAAGTTGACCAATGTGTGTGCCTTCTCCTTCCCTCAGTTAGAAATCTTGTTCCACACATGTTACAGGGACAGTGTGTGTACATTGTTTCTGCGTGTGTAAATACCACATATAgattaatgaaaatatataaagctgTATTTATATTGTGGCAActtttttgtcacttttattttgtatgtaaataaaaatattacaaactgtGA

Function

NR:

description
PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0051087 chaperone binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258192.3 True 1651 mRNA 0.44 9 58192628 58198200

Neighbor

gene id symbol gene type direction distance location
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 2899 58175809 ~ 58189729 (-)
chga chga coding downstream 42881 58136609 ~ 58149747 (-)
tmem251 tmem251 coding downstream 109145 58081670 ~ 58083483 (-)
LOC103040793 LOC108411326,LOC107721373,LOC108257828,LOC107659193 coding downstream 116063 58060823 ~ 58076565 (-)
LOC111194372 NA coding downstream 439485 57685492 ~ 57753143 (-)
LOC103037877 LOC108411323 coding upstream 12677 58210877 ~ 58222945 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding upstream 29006 58227206 ~ 58234274 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding upstream 68480 58266680 ~ 58274282 (-)
LOC103034096 foxc1 coding upstream 193921 58392121 ~ 58394358 (-)
LOC103033774 foxf2,LOC104946676 coding upstream 209236 58407436 ~ 58410581 (-)
G29108 NA non-coding downstream 68063 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 135168 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 198515 57992403 ~ 57994113 (-)
G28997 NA non-coding downstream 315883 57876271 ~ 57876745 (-)
LOC111189782 NA non-coding downstream 338870 57849734 ~ 57853758 (-)
LOC103035795 NA non-coding upstream 65044 58263244 ~ 58264118 (-)
G29131 gmds,LOC107711642 non-coding upstream 114614 58312814 ~ 58385453 (-)
G29162 NA non-coding upstream 216964 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 322437 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 471094 58669294 ~ 58705165 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 17924 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 197152 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 351310 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1497793 56640351 ~ 56694835 (-)
G28536 NA other downstream 2376030 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 734763 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 800341 58998541 ~ 59085886 (-)
G29478 NA other upstream 1239400 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1308726 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1951197 60149397 ~ 60162066 (-)

Expression


Co-expression Network