LOC103041400 (si:dkey-85n7.6,LOC103041400,LOC108424448,LOC107659191,LOC107602279)


Basic Information

Item Value
gene id LOC103041400
gene name si:dkey-85n7.6,LOC103041400,LOC108424448,LOC107659191,LOC107602279
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57920735 ~ 57968882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258203.3
GGTGCAGCTGTAGCGCTGTGAAGAGGAGAGTCCTGACTGGACACTGTGTGTGCTGgggtccacacacacacacacacacacacacacacacacatcttggGAGAAGAAGCGTCGATGGCACACATCGCTCGCTCACACCTCAGGAGAGCGCCGCTGTTTTTCTGCACGTGTTGGTCCTGAGCTCAGCTCAGGTGTTCTTCTTCAGAAAGTAGCTCCTCTGAGGAGAGGCGCTTCAGCTCCACAGCGGCAGCGTCGATAGGGTATCTAACTTTCGACCCCCTCCAGCCTCTCCAGCCCACCGGCAGCACTACACAGGCGGCTGGCGGGAGATGCAGCCTGACCGAGGGGCTGCAGCGCGCAGGATTCCGGCTCGGTCTCGCGGGCTGGAGGAGAAGTTTAGCTCGAGCCTGAAGCGGAGCGGCACCGCGCCGCAGCAGCACCAGCTCCAACTTTAAGCCCCAGCCCGCCGAGCTCCTCCACCGGACCCACACCGCCGCTCTGGGCTCTTCATGCCACCCACTAATGAGATAACTGGGCAGGAATGTTCAGAGGACCACGCGGCCACGAGCTCGAGGGCACAGTTGCCGTTCAGCGCGAGAgaccgccgctgctgctgctgccggacCGCCGCTAAATCTCCCCTCAGCAGAGAGTTCCTCTCCAGGTGGACTCTGAACACACAGGAGGAATGTTCACCCACAACCTGCCGGCGACCACGCTGGGGGTCCTGCCTTTTCTCTTCAACCACTGCTTCCTCTCGCTCCTTCTCCTACAGCATGCCCAGGGAGAGCTCCAGAAGTCATGCTCTCGGACCTCAGCAGAACCAGTGGAAGGGGTCTGCAAGCTGCCATGCCAATGCAAACGCTACCCACCTTTacccccacctcctcctccaccaccaccacccagacTGCTCTCTCCTACTGtgGCTCCAGCTACTGTTCCACCTATGAAGCCCTGGGGAAGAGAGGTGGAGATTTTGGTGCTGGGGACAGTGATCTGTGCCTCAGTAGTCTTCCTTCTCCTGACAGGCATCATTTGCTACAAGGCTATTAAAAGGAAACCATTGCGGAAAGAAGAGAACGGCACAAGCCGAGGAGAGTACGCCATGAGCTCTCGCTGCACGCAACAGGTGGTGGAGACCAACAACACTGGAGTATAGTACTCAGAGCAATTCAGTGGAACACTGTAAACACTCCTGATCCCACCACACCATCTCTTTCTTCAGGCTTTGAAGGGGTTTGGAGATGGATGAGAGGTAGAGAGTGAACTTTTGAAGGAACTTAAAACCGTAGCTCTGCCTGTGTGGGAGATGTGAATactttaaacagagaaaaaaacacttaaatgaCAAACAAGTGCTGGTAATGATTGACGTATGACAGTACACTAAAAGGTTCAGAGAAGGCATGGAGCCCAGAGACTCATTGTTATGTTGGACGAGATGACAGCTGTCAGTATCCCGAGGCTGAAGCTGTCAGGCCCTGAGACACCTCAGAGCCTCCTCGGAGGACAGCGTACCAGTAGACCAACAACGAATCAAACGCATGCACTTTCTGTTGAATGCAATGACGTCTTAAGATTCCTTCCTTTCTCCGCtctcctctctgtctgtttccCCGCAGTTTCCTCCCTCCCCACCTCATGTAAATAAAGAAGGCTACGTTGCTTCGTGAGCGAGCGAGTCCAGATCGAGCAGACGCAGATGGTGCTCCAGCTGTAAGCTAAAGGAGGAACCAGGAAATCGATCCCTTTTTTGTATGACTATGCAACTGGAAAGGTGGTGCAtgttcatgatattaaaaaaaaaaccacaacgTTAGCATCATTTGCTGCTAATCAGCATTGCTAATTTCTAATATGGATTGGACAGTCTGAATTACTCGCTCTAATCACTGTACATGTGGAATTGACTAATTCAGCTGTAATTGCTTGTCATCAGTAAAGAGGCACGAATCAATGTCACACATACATCAATTAAAGACTGTTATTTAACTAGGGCTACATCATCATGCAAGgacaagctctctctctctcttttaattttagctctgttattttattggTCATTGTATTTGATTGCATAAACTAAACCACTTTCACACTTTTTGTCATTATGTAGTAAATCCAGTAAATCCACCATGAGATTAAATCTGTTAAGATCACG

Function

NR:

description
proline-rich membrane anchor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258203.3 True 2167 mRNA 0.51 4 57920735 57968882

Neighbor

gene id symbol gene type direction distance location
LOC103047227 NA coding upstream 30912 57878155 ~ 57889823 (+)
LOC103041704 LOC108424533 coding upstream 45343 57859082 ~ 57875392 (+)
LOC103042834 NA coding upstream 65612 57848467 ~ 57855123 (+)
LOC103043365 LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 coding upstream 119864 57795392 ~ 57800871 (+)
LOC103047529 NA coding upstream 132700 57778205 ~ 57788035 (+)
LOC103040480 btbd7,LOC108411319,LOC107721332,LOC107659192,LOC107583814,LOC107711654,LOC107665372,LOC107602295 coding downstream 34365 58003247 ~ 58051793 (+)
LOC103038833 NA coding downstream 109606 58078488 ~ 58080709 (+)
LOC103039449 itpk1,LOC108257830 coding downstream 117627 58086509 ~ 58135453 (+)
LOC103036000 NA coding downstream 278899 58247781 ~ 58261441 (+)
LOC103034955 LOC108257896,LOC106584199 coding downstream 313708 58282590 ~ 58317479 (+)
G29003 NA non-coding upstream 9142 57911326 ~ 57911593 (+)
G28955 NA non-coding upstream 129784 57790251 ~ 57790951 (+)
G28872 NA non-coding upstream 404430 57450210 ~ 57516305 (+)
G28864 NA non-coding upstream 522514 57397948 ~ 57398221 (+)
G28833 NA non-coding upstream 802012 57118496 ~ 57118723 (+)
G29029 LOC108411326,LOC107721373,LOC108257828,LOC107659193 non-coding downstream 92043 58060925 ~ 58076530 (+)
G29036 NA non-coding downstream 147103 58115985 ~ 58119141 (+)
G29040 NA non-coding downstream 158980 58127862 ~ 58128360 (+)
G29033 NA non-coding downstream 173991 58142873 ~ 58144817 (+)
G29071 NA non-coding downstream 294316 58263198 ~ 58263581 (+)
LOC103042006 NA other upstream 108247 57802891 ~ 57812488 (+)
G28865 NA other upstream 518343 57401925 ~ 57402392 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 1214643 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 1466801 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 1608624 56290747 ~ 56312111 (+)
G29155 foxq1 other downstream 448512 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 1095591 59064473 ~ 59112315 (+)
G29382 NA other downstream 1251650 59220532 ~ 59221036 (+)
LOC111194375 NA other downstream 1252384 59221266 ~ 59228840 (+)
atraid atraid other downstream 1585403 59554285 ~ 59559762 (+)

Expression


Co-expression Network