LOC103044195


Basic Information

Item Value
gene id LOC103044195
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57450925 ~ 57490723 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258215.3
CAGTCGACACTGGTCTCCCCTATCACACTGGGTAGTAGAAGTGTTCCTCTGCAGTCTGTTAAGCTTGTTTCTTCAGTAATAATAGTGCGGAAAGAGTGAAACTCCCTCCTCAGCGGTTGGACAGCAGCCAGTAGTGTACAGGAGGCCGTCCTTCACGTGCTGCCTGCAGTAGCAGAGAGGGGGCGGGGCTGTTCAGCAGAGTCCACAGGACCAACCTGCAGCTGATCTACAGCTCATACCACTGAAACCCAGCCAGGCCAGGCCCCGCCCAGTCCTCCGGACACGCCCCCTCACAAGCAGACATGTTCTTGAGAAACTGAGCAGGTTGCAGCAGTGAAAAAGGAAAGCGATATGAAGCGTTCTGGAATACAACTCACTACAAAGATCCAGGGATTCCTCTCGCACAGCTCAAcagctctctgattggctgagagtgAGCCAGTCTGGACCTGCCCACTTCCCCTACTCCAGCGGTGGCAGTActgcttttttcctctctctgtttttggCCCAACCACAAGGGTGTGTGAGCCTGCCTTGGCCTGAACAGAAGTCTTTTATTTACTGCTTTCCCAGGCTGTCCGGAGCAAACTGGTATGCTGCGGAAAAAGCCAGAGATAGGACCCCAGCCAGAGGCCTGGCAGTCTTCACCCacacaggaggaggaggaggagaagagagcTGTGTAGAGAGGAAAGAGTGACATTACAGGCTCCTAGAGTCAGTCAACTACACCACTGCACAACACTCTGAGGGGCTCTGAGAAGaaaCTTACCCTTACCCTGCTGAATACTCCAGCTGAAGACCAGCTGTAGCTGCTTTCAGATGGCCTAAGCTGGCTTCAGTGGTCAAACTGCTTGAAAAGCCAGTGTTCCAGACGAAAACATAGCCTATGCTGGGCAGCTAGACATGCTAACTCTCACTGCTGTGAGGCTCCGATATGGAGCACTAAAATGCTGGGACAGTCAgcgcaccatagcaaccatcatcTCAGGCAACAAGATATCACAACAGGTGAGGGAGCAGCTGAAGAAGGATGTTGCTGAGATGAAGAGTCAACTGCCTGGCTTTAGACCAGGCCTAGTGGTGCTACAAGTTGGAGACAGAGACGACTCCAACCTCTATATTCGTATGAAGCTGAGGGCAGCAGCTGAGATTGGAATTAATGCCAGCCACATCAGGCTTCCAAAGACTGCCACAGAAGATGAAGTACTACAAACTATAGAACAGGTAAATGAAGACCCAGCTGTCCATGGTCTCATCATCCAGTTGCCACTGGACTCAGTCAACCCCATTGATGCAGATAAAATGACCAATGCTGTGACTCCAGAGAAGGATGTCGATGGTCTGAGCAGTATAAATGCAGGGAAGCTGGCTCGTGGAGATCTGAGGAGTTGCTTCATCCCCTGTACTCCTAATGGCTGCATGGAGCTCATTAAGCAGACAGGTCTGCAAGTGGCCGGCAAGATTGTGGTAGTCGTTGGGCGCAGTAAGATTGTTGGAGCTCCTATGCATGATCTCTTCTTGTGGAACCATGCAACTGTGACCAGCTGTCACTCCAAGACATCAGACCTTGCTGAACAAGTGAAGAGGGCCGATATCTTGGTGGTGGGCGCTGGAAAGGCAGAGCTGGTGAAAGGTGATTGGGTGAAGGAGGGTGCAGTGGTCATTGACTGTGGCATCAATTACATCCAagACAGCAGCAAGCCAGGGGGGACACGCGTCGTTGGGGACGTACATTACCCTTCAGCTAAAGAGCGGGCCGGATACATCACCCCAGTCCCTGGAGGAGTGGGGCCTATGACTGTTGTCATGCTGATGGAGAATACAGTCCAGAGTGCTAAGCATTTTCTGCAGATGTACACAGGGAAGTGGAAGATTTCCTACAGAAAAGCCAAACCTCTGAAACCTCAGCCAAGTGATTTCCAGATCTCTCACTCGTGCCAGAGAAAACCTATAGCTCAACTAGCCAAAGAAGTGGGTCTCTTCTCAAACGAGGTGGAGCCCTATGGCAGGGCAGGGGCGAAGGTCCGAGTGGACGTCTTAAAACGCCTGAAGAAACAGCCTGATGGGAAACATGTGGTGGTCACCGGAATTACACCTACTGTGCTTGGTGAAGGCCGGAGAACCATCACTTTTGGGTTGGCACAAGCTTTAGGAGCCCATCTGAATATCAATGCTTTTGCCTGCTTGCAGCAACCCTCCCCAAAATCAAGTTTTGATCTCAGGGGTGGTGTTGTTGGAGGTGGATATTCTCAGATCATTCCCGCAGGGGAGGTCAGTCTTCAGTCCACAGGAGATATTGAGGCTGTTTCTGCTGCATGCGACCTCGTCATAGACACCATCAAAGCATACGCCCACTACCAGACTAAATACTCAGATAAGGTTTTATTTGACCTACTGGTGCCAATCAGAGATGGTCATCAAACCTTCTCAGCATCTCAGATCAATAGATTAAAGAGACTAGACATCGAGACATCTGATCCCTTAACCCTGACTGAAGAAGAGATGAGGCGTTTTGTCCGATTGGATGTTAACCCAGACTCCATGCAGGATGCTAACTTCCTGAAGGATGAAATCATGGCTATACTGTCTCTGAGCAGCAGTGCAGATGACCTGAAACACAGGCTGGCCAGGATGGTGGTTGCTGCCAGCAGATCTGAAGAGCCCATCACCACTGAGGACCTGGGTGTTAGTGATGCCTTAGCCCTGCTGTTGAACAATGCTCTGAAACCCTGTCTGATGCAAACGTTGGAGgGGACTCCAGTATTTGTTCACAGTAGTTCATGTGCTGATTTCACCCTGGGCAGTGCATCCGTCATGGCAAGCAAAATAGCTCTAAAACTGGTGGGCCCACAGGGCTTTGTTGTCACAGAGACTGCACACGGTGCTGACGCCAGCTTGGAGAAATTCCTCAACATCAAGTGCCGCTCTTCAGGCCTGCAGCCAAATGTGGTGGTGCTAGTGGCCACGGTCCGCGCCCTCAAAATGCACGGGGGTGCCCCACGGGTCACAGCAGGCTTTCCCTTACCTAAAGAGTATTCAGAAGAGAATCTGAAGCTGCTGGAGAAAGGCTGTGCTCACCTAAAGAGACAAGTTGAGAATGCCAGAGAATATGGTTTGCCTGTGGTGGTGGCTGTCAACGCCTTCAGTTATGACAGAAAGGCAGAGCTGGATCTGGTGTGTAGTCAGGCGAGACAGGCTGGGGTGTTTGATGCAGTGCTGTGCACTAACTGGTCTGATGGGGGCGCTGGAGCACTGGACCTGGCAAAGACTGTTCAGAGGGCAGCAGAGCTACCCAGCCAATTTCATTACCTCTATGACCTGCAGTTGCCGGTTGAACAGAAGATTGAGAAAGTGGCACAGCAGACATATGGTGCTAAAGATGTGAAGCTCTCACCAAAAGCCAAAGAGAAGCTAGCACTTTACATGAAGCAGGGCTTAGCTAACTAtccagttagcttagctaagacCCACTTATCCTTAAACAATGATCCCAAGTTTAAGGGGGAGCCCACAGACTTCACCTTGCCTATCTCAGACGTCCAAGCCTATGTGGGAGCTGGCTTTCTGTCCCTTCTTGTAGACAGGAGAAATGACTGTACTGAAGATGAAGATCCCATGTGGCCCTGTTTTCatggcaacaatgacctgtatAGTAACAGCAAGTAGCTTCATTTTATGAGGATGATACCAACACTGGGAGGGTGAAGGCTGCCATGTGCTTTACAATCCTTTCCAACTACTGCTAATGCAATTTCGTCAGACAACTCAGTGCTTTGGAGAAGAATGCTAACTGCTAATTTTGTGACACCAGCTAACAGGCAGCTGTTATGGCTAATATTGAGCTGAGAGATGGGGAATGGAAGGGTCATCCTTCTTActtgaagaaaaaaagattGTTTGTACTTTCTTGGACTTCTACCAGGGATCAGACACTTTATTAGATCAGAGTTTCAGACGTTGTAAAGCAGCCACTGCTATTCTGAGGGCCCTGTCTTACACCTTGCACAAGGCATGTTTCGATGCTCATTGCTGTCTCACACCCTGTCAGTAATCTATTTTTATGCCTTGCACCTGcaccatttaaatagcaacagagcttatgaatatatctacactgatgggcgtagTGGTCTCGAAAtaagatgtgttcagg

Function

GO: NA

KEGG:

id description
K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258215.3 True 4159 mRNA 0.50 30 57450925 57490723

Neighbor

gene id symbol gene type direction distance location
LOC103044876 NA coding downstream 4590 57440671 ~ 57446335 (-)
zbtb1 zbtb1,LOC107711663,LOC107668253,LOC107721384,LOC107602161,LOC107562689 coding downstream 19270 57425305 ~ 57431655 (-)
vrtn vrtn coding downstream 66259 57379813 ~ 57384666 (-)
LOC111189704 NA coding downstream 224838 57218910 ~ 57226087 (-)
dll4 dll4,LOC107562694,LOC107721368,LOC107602157,LOC107668208,LOC107739369 coding downstream 598495 56839749 ~ 56852430 (-)
LOC103043676 LOC108424526 coding upstream 117047 57607770 ~ 57655080 (-)
LOC111194372 NA coding upstream 194769 57685492 ~ 57753143 (-)
LOC103040793 LOC108411326,LOC107721373,LOC108257828,LOC107659193 coding upstream 570100 58060823 ~ 58076565 (-)
tmem251 tmem251 coding upstream 590947 58081670 ~ 58083483 (-)
chga chga coding upstream 645886 58136609 ~ 58149747 (-)
G28823 NA non-coding downstream 440218 57010477 ~ 57010707 (-)
G28813 NA non-coding downstream 625924 56824696 ~ 56825001 (-)
LOC111189610 NA non-coding downstream 836858 56588694 ~ 56614067 (-)
G28728 LOC108415780 non-coding downstream 941237 56487213 ~ 56509688 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding downstream 1211202 56232707 ~ 56239723 (-)
G28938 NA non-coding upstream 272778 57763501 ~ 57764257 (-)
G28959 prph2l,LOC108424527,LOC107711660,LOC107665408,LOC107569893,LOC107721267,LOC108258119,LOC107602225 non-coding upstream 307368 57798091 ~ 57798381 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding upstream 308339 57799062 ~ 57800871 (-)
LOC111189782 NA non-coding upstream 359011 57849734 ~ 57853758 (-)
G28997 NA non-coding upstream 385548 57876271 ~ 57876745 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 756090 56640351 ~ 56694835 (-)
G28536 NA other downstream 1634327 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1809550 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 1844039 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 1949165 55499900 ~ 55501760 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 321539 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 500918 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 668484 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 1442240 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 1507818 58998541 ~ 59085886 (-)

Expression


Co-expression Network