LOC103045802 (inafm2,LOC106952300,LOC108165849)


Basic Information

Item Value
gene id LOC103045802
gene name inafm2,LOC106952300,LOC108165849
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57405751 ~ 57407393 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258219.3
GTGAGGGCATCAGAGCATCAGTCGGAGGTTCAGTCTGTGcggagtgtgagtgagtgtgtgtgtgtgtgtgtgtgaggggctTTAATGGTGCGGAGTGGTGAATCGCGGGCTTTAATCAGGGGGATTTGGTCATGCAGCTGCTCCAGATTGAGAGGACTGATTTATTACAGCAGGCCGGCGCCGCTGTGCTGTTCTGTGCTGCAGCAGCATGTCTCGGTGCGGTTTTGAGAGAAGAGTTGAGGATGGAGGGAAAGTGAGGGAGATCCTGTGAGGAACGAGAATCTGCTCCAAATCTCTATCCAGAAAAGCCTCAAGACGGACGGGGAACGGGAGGAGAGACGGAGAGCCCGGGGGAACATGAGGGAGCGGGACTTCATGCCAAACATGGAGCGAGGTAAACCCGCGACATACACGGGGGACAAAAAGGCGAAAATGGCCGCTAAGACCAACAAAAAATGGGTGAGACTGGCGACAGTTTTCGCGTACGTTCTCTCCGTGTCTCTGGCTGCTATCATCCTGGCCATCTACTATAGCTTGATATGGAAGCCAACCAGTGCATCTCCGACGTCTAGACGGCCATATATTGCAGCCGTGGTCTCTACCACCCCGATGAGCTCCAGTCCTACCAATAGCACAGATCATGTCTTTGACAATGGCATGATGACAGATGTTTCACCTACAGAGCCTGGAGCAACAGTGGCTTCCTCACATCAAGCATCAGATTCTGCTGAAGATGCAGACTCCCATGAGATGGCCAGCCAAGAGGAAGCCCCCCATGGAGACTTTGCCCTCAGACAAGCAAACATAGACCCACATAGACCACAGACAAGTCCATCATCTGCACCTGAAGAGGAGGACGCAGGAGTTATAGACCTGCCCGCCACACAGGGGGACACTGACTTTGTTCCGCAGGACAGGTATGATGGTTCTGGAGCTGACCCCGCAGCAGAGAACCAGCCAGTGGAACTGACCCGTACTCACAAGCCCCCCAGCTGGGACCCTGAGTCTCCCAGCGAGAGCTCACTGCAGTGGTCCACTGGTCCAGCCACCTGGAGGACCTTCCTGGAAAGACCAGACGAGTCCACTTTCACACATGTCGAGCTGGAGCTGGCCGAGGGTTCTTCTCCACTTCAAGATGAGGTGGTTCCTAAGGAAACAAAGGGCTCCAGTGTCTTGTTTACCCCAGGGCACACATGATCAATCACTGTGAAGTGCAGTGACCACCAAAGGAGAGCAAGTGGAGTGGGAGTTAGTAAGGAATTGCTTTGATTTGACCACATTTTTCTATCAGGACAAAAGCAAATGCAGTTGTCCTGACCTTGAAAAAGCTTGGTCATTGTTTTACTTTGATGGATTTTGTATCAGGCATCCTTTGTGAtagctctcacacactctctcacatgcGATTTGGGCGAGAAATTCACTCAGACGAGAGACAGACGATGGGACTGGTGAAGGAATATGAGCCATTGATTTCAGACAAGCTGAAGCTGGACAGTGATGCTCTACGGTAGCATATATGTGATCCTATTTCTAAAAGGAACAATCTAAGGTAGAAATACATAGCATATTAGTTTTGCTCAGGTGAACATCTACCATACTGTGTGAAAGTCTTTAACACTCTACTAAAGGGCTGCTTTCAA

Function

symbol description
inafm2 Predicted to be integral component of membrane.

NR:

description
PREDICTED: putative transmembrane protein INAFM2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258219.3 True 1643 mRNA 0.51 1 57405751 57407393

Neighbor

gene id symbol gene type direction distance location
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding upstream 120967 57215344 ~ 57284784 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 586315 56767269 ~ 56819436 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding upstream 639952 56759706 ~ 56765799 (+)
pigh pigh coding upstream 674413 56724380 ~ 56731338 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding upstream 770258 56486500 ~ 56635493 (+)
zbtb25 zbtb25 coding downstream 25761 57433154 ~ 57438015 (+)
LOC103047529 NA coding downstream 370812 57778205 ~ 57788035 (+)
LOC103043365 LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 coding downstream 387999 57795392 ~ 57800871 (+)
LOC103042834 NA coding downstream 441074 57848467 ~ 57855123 (+)
LOC103041704 LOC108424533 coding downstream 451689 57859082 ~ 57875392 (+)
G28864 NA non-coding upstream 7530 57397948 ~ 57398221 (+)
G28833 NA non-coding upstream 287028 57118496 ~ 57118723 (+)
G28822 NA non-coding upstream 395032 57010477 ~ 57010719 (+)
G28807 NA non-coding upstream 575734 56829621 ~ 56830017 (+)
G28805 NA non-coding upstream 580752 56824688 ~ 56824999 (+)
G28872 NA non-coding downstream 42817 57450210 ~ 57516305 (+)
G28955 NA non-coding downstream 382858 57790251 ~ 57790951 (+)
G29003 NA non-coding downstream 503933 57911326 ~ 57911593 (+)
G29029 LOC108411326,LOC107721373,LOC108257828,LOC107659193 non-coding downstream 653532 58060925 ~ 58076530 (+)
G29036 NA non-coding downstream 708592 58115985 ~ 58119141 (+)
G28865 NA other upstream 3359 57401925 ~ 57402392 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 699659 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 951817 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 1093640 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 1166022 56232739 ~ 56239729 (+)
LOC103042006 NA other downstream 395498 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 1010001 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 1657080 59064473 ~ 59112315 (+)
G29382 NA other downstream 1813139 59220532 ~ 59221036 (+)
LOC111194375 NA other downstream 1813873 59221266 ~ 59228840 (+)

Expression


Co-expression Network