vrtn (vrtn)


Basic Information

Item Value
gene id vrtn
gene name vrtn
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57379813 ~ 57384666 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258220.3
CCGATCAGCGACCATTTCCTGGAGGAGGTACTTATCGTTTCAAATGTCCGCGGCTCAGACCCGCAGCGCCGTCTGAGTCCCGCCTGTTCAGAGCAGCACGACCATGGACTAAACTCCACCACCACAcctattacacacactcacctgtacacagagagacagagacacagagctgCACCACACGCTCAGGACTGCTGCTGGTTCTGTCTGGTGAACTGAGGAGATTTTCAGCTCGGGATCAGGACCCACTGCTGCTCCAGgAATGATTCCGAGGAAGGAGGTGGTCCTCTCCATGCTGGGGGAGCTTCAGGAGGCTACTGAGTCTATGGGCCTGGATGCCCTGATTAAAGTGGCTCTGGAAGTGGAGCAGGTCCTCGCCCCCTTCCATCTCCCTGCAACGCTTTGCACAGAGATCTCCTCATGGATGGGAGTTGATGGAGTGGCTCACAGACTGTACCCAGCTGATGCACCGGCTGGCTTGCTTCCTCTGGTCTGCAAAGGGGAGGGCAACCTGCTGTTTGATGCTGCCAGCATGCTACTGGTGGGATCCACAAGCCTGAGCTTGGAGCTGCAGGTGAGGACGGTGGTGGAAATGCTGCGGTGGAAGCAGTACTACCTTAGCGGCATGATCGACTCTAAGGTGATGCTGCAGGCAGCCAGATTTTCCCTCTGCGCCGAGGAATCCCAGGACATGCTCAAGCTTCCTATGCAGGTGCTGGAGGCCATCTTTGATGCAGATGTCAAGGCGTCTTGTTTTCCTGGCTCTTTTGCAAACATGTGGCATGTCTATGCACTGTCTTCTGTCCTCCAGTGCAACATCTACTCCATTTACCCTATGTATAATCTGAAGATTAGGCCATATTTCAACCGTCTTATTCGCCCCAGAACGTACCCCAAGGACACTGAGCCATTCACCCTCCACATTATGTGGTCTGGTGAGTTGGAAGCAAGTTCCATGTTCAAGCCCCACAACTTTGTCGCCTTAATTCATGCCAGTGACCTTAAAATTGGAAGCCCAAGCAGTGAACAGCGTTTGCCATCGGTGAAGTCACAAGATTTTCTAAGTGAGGACTTGCAGTTGTCTTACTCCACTCTCAAAGACAAATTCAACATCACAAAAAGCACCTTCTATCGTTGGAAGAGGCAGAGCACAGAGTACCACAAAAAGTCAGTCGCCAGATATgaggccaaacacttttttcaggCCTGCTACAAAGAAGGGAAGCTCATTTCCCAGAACCAGTTCCGAGAGTTCTTTCCAGAAATTTCCAGATCTACATACTATGCTTGGAAACATGAACTCATATCTACTGGCAGTATCGCTTCTGGAGGCTCAACTGGTGAGCTAAGCCCTGGAGATAGCATCGAACAGGACTACTGGTCTTCTCCTGAGATCAAGAAACAGCCCAGCCAGGAATCCCTTGCAGGCAtacaagccttcaagtctgagAAACTAGAGGGAGATCGGGCTCAAAATGTGGCCTTGATGCAGGAGGCAAAGAAAAGCCTCCAAAACTGCATTGCCACAAACACTTCATTCCCCTACCGAATCTTTAAAAGAAGGTTTCCAGGAATTTCAAGATCAACATACTACAACTGGAGGAGAGAAGCCATGTTGTTCACACCTTTCAAAGATCTCTCAGGCAATGATGATGAAAGTTCAGAATCTGACAAAGCCCACAGTCCCAAAGAGAAGTTGCCGGAATTGCCGGCTTTGTTAGAGAGCCGCAGAGTAACCCCCAGAGTCAGGATCTCAAGACGCAGTCAGAAGAGTCTCAAGATGATCTACttgcagaagaaaaaaattagagaaGAGGCCAAGGCTTGTGTTCAGGGCTCAAAGATGTCCCTGTTCAAATTCAAGCTCAAGTTTCCCTTCATCTCTTCTTCTTACTATTGGCTTTGGAGGCATTCCCTCAACAAGAAATCCCAGCAAAAGCCTGAACTTGGGTTTGAGACGTATGAGTCTAAAAGTGTGGATGTAACTACCGCAGATCTGCTGAAACGGGTGGGAAGTCCATCACGATTTCCTTTTGATGTTACCCTGGATTACCTGAATAGGCAGGCAGTCAGCCCCACTGAATTCACCCTGCCGGAATATCATCTGTCTGACAAGACCAGCAATGAACAAATGTTTGTAATGGATGTCGTGGCTTTAGCCAATTTCAAGGCCAAGGCTAAACTGTTCCTGCAGCAGCGCTTTGAAGAGAAGTCTTTCCCCACTTTCAAAGAGTTCAGATCCTACTTTCCTCTCACTCCACGCTCTACGTATTACATGTGGAAAAGGGCACTGCATCATGGAGTGCCATTAGTTCATGGCTAAAGGGAATTTCTGTCACTTAGTAAAGCTGCCTACGtatcacacacccacacctaACAGCCGTAGCTGAACATTTCTCATCAATAGCTGAACAGTTATCGTCAACACACATCCTGTTAGACTTGAGTCTGGCATCCAGGTGACTCCCATATAGTGTAATTGCAGTTCATGCATCTTAATTGTGTTCTTTTCAGGTTTTCTTGACCACTTGGAGTCCAGCTCAAGGACATTTGCATGTGTGTGAAATCAGACAGTCTTTACATGCCACTTAAGTCCTGATGGCCCTCAGGCAAAAGGCAGTTCAAAGCCATTGATAAGAAGGTTTCAAATGACTCTTTGTTTAGGGTTTTTCCTTTTGGTTTGCATTTTAAATGGACCATATTTGTTTTTTCCCTTATTTTCTTAAatgtcttttaattttaaatattttggttttttttattgtcaactTATTATTTTACCACTTGCTTTCATAATCAGCAGTCAATGGatggtattgtttttttaaagagtttaaaaaagaactgaatagaCTTTCACTTTTggattgtttactgtttacattgCTTGATTTtgttacacatatatatttttgtatagatTATTGAATGTTCTCTGTTCTTTGAATGAATTCACTTGTTACAAGGTACACATTAAAACTCATGAGTTAGGGTGTTAGAAGCAATTTTGCACAGTCACATGCTCACTTTTGTATTACAGTACAGCTGCTAAACTTTTTATATGCTGCTTCCAACTAATTCCTATAATTTTATACACTTAACTTTGATGTAAGGTTCTCTGTGTTgcttttttgttgcattatacTACCTATTTAGATTTATGTTTTACTTTGGGTGACTCTCAGCTTTAAGAAGAGTCACAACAGCTAATGCAAGCATTATTTAAACGTCTTCAAAGTCTGCAGCAAAggatcttttttgttgtttgtacaTAGAATACATTCCTGTCTAAAGCAAGGTCAAATGAGTGTATAATACTGAAATGATACAGGAAATAAATCATGTATTCCACTTA

Function

symbol description
vrtn Enables DNA-binding transcription repressor activity, RNA polymerase II-specific. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in chromatin. Is expressed in several structures, including blastodisc; margin; oocyte; tail bud; and yolk. Orthologous to human VRTN (vertebrae development associated).

NR:

description
PREDICTED: vertnin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258220.3 True 3355 mRNA 0.44 2 57379813 57384666

Neighbor

gene id symbol gene type direction distance location
LOC111189704 NA coding downstream 153726 57218910 ~ 57226087 (-)
dll4 dll4,LOC107562694,LOC107721368,LOC107602157,LOC107668208,LOC107739369 coding downstream 527383 56839749 ~ 56852430 (-)
chac1 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 coding downstream 556762 56820485 ~ 56823051 (-)
rhov rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274 coding downstream 621047 56755389 ~ 56758766 (-)
zfyve1 zfyve1,LOC107721321 coding downstream 656039 56712617 ~ 56723774 (-)
zbtb1 zbtb1,LOC107711663,LOC107668253,LOC107721384,LOC107602161,LOC107562689 coding upstream 40639 57425305 ~ 57431655 (-)
LOC103044876 NA coding upstream 56005 57440671 ~ 57446335 (-)
LOC103044195 NA coding upstream 66259 57450925 ~ 57490723 (-)
LOC103043676 LOC108424526 coding upstream 223104 57607770 ~ 57655080 (-)
LOC111194372 NA coding upstream 300826 57685492 ~ 57753143 (-)
G28823 NA non-coding downstream 369106 57010477 ~ 57010707 (-)
G28813 NA non-coding downstream 554812 56824696 ~ 56825001 (-)
LOC111189610 NA non-coding downstream 765746 56588694 ~ 56614067 (-)
G28728 LOC108415780 non-coding downstream 870125 56487213 ~ 56509688 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding downstream 1140090 56232707 ~ 56239723 (-)
G28938 NA non-coding upstream 378835 57763501 ~ 57764257 (-)
G28959 prph2l,LOC108424527,LOC107711660,LOC107665408,LOC107569893,LOC107721267,LOC108258119,LOC107602225 non-coding upstream 413425 57798091 ~ 57798381 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding upstream 414396 57799062 ~ 57800871 (-)
LOC111189782 NA non-coding upstream 465068 57849734 ~ 57853758 (-)
G28997 NA non-coding upstream 491605 57876271 ~ 57876745 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 684978 56640351 ~ 56694835 (-)
G28536 NA other downstream 1563215 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1738438 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 1772927 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 1878053 55499900 ~ 55501760 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 427596 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 606975 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 774541 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 1548297 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 1613875 58998541 ~ 59085886 (-)

Expression


Co-expression Network