LOC103047529


Basic Information

Item Value
gene id LOC103047529
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57778205 ~ 57788035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258223.3
acactttttcacaccacaaAGTGAAATAGACGAATTATCTGTTTTTAGCAACATAGCAAATTTAAGCAGGGGgacaacttttttaaaaataattttgtacatatattttcGGACTTCTATTTATTCtaattttacattcattttagtgATGAGTGTTTATTTAGAAGTGCTAATGCCAGTGTGATTTGTTAATATGCTTTGAGGAACTGATGAGCGTATTTGCATCatcttgcattttttttcacattaacgAGTCCCTCTGACTTGGTGAAAACAAGAAGGTCCACGGAGAGTTCTATGGGCACCCTCTCGAGCCTAACTTGCTCCTCTTTGCTCCTCTTTGGACCTTCTGGTCCTTCTTTAAAAACGCAGACACGCGCTCTGCTCTTCTCCTAAGCATGAGCTCATCCAACTCCAGCGCGAGATTCATCCCCCTTTCTGTCGACTTCACCCTCCCTGAACATTATCTCATCTACGCTTTTCACATCACCTTCGCCACGTGCGCCTCCGTGCTGGCCGGCTCGGTGCTCGTGGGCATTCTGAAAGACAGAAACCTGCGCGCGCAGAACAGGTTCGTGTTCATGATCAACACGAGCATCTGCGACACGCTGACGGGTCTATCCGTCTTCTATCTGGGTCTGTTTGATGTGCAGGAGGGATACCCGTCCAGAAACGGGACCTTCCAAATTTTGCCCTCATTGCTGGGGGTAAACATCATCACCTTCATGTTCGCTCAGTTTGATCGTTACTGCGCGGTGTGTCACCCCTTCTTCTACAACCGCTACATCTCCAGATCTGTGGTGATCGGGGTCTGCGTGTATTCCTGGTTCCATGTTTATGTGCAGCCGCTGGCGTCCAATCTCGTGCCTCTGGCTCAAGCCGCCCAGATCTACGCCTTCAGCATAGCCTGCCTGCAGATCATAGTGGTGACCAAGGTGGTGATGACGGTCAAGCTGTACCTGGTGGCTGAGTCTCAGCTGAAGCGCGATCCTCCGGGAGCAGAAAGGGACGGTAAGAAGGAGTCTCTGCGCATCATCATAGTGGTGGTCATCCTCTTCCTGACTCTCTGGATGCCGTCCTTCGTCAACATCATCCTGAGGCAGGTGAGCAGGTCCGGTCTGGTCTTCAGGAACGAGGCCACCAACGCTTTCGCCATCATGGCGAGGCTGAACGCGGTCAGCACCCCCGCGGTCTACCTGCGGGGCAGCCCGGCGCTGCGCGCGGCCGTGTGGCGCGCGGGCTGGAGCAAAGTCCTACCTGAGTGGACAAGATCCAGTCAGAAAAACACCACCTAGAAGCAATAAGTGAAGACTGCATCGCCTACTTTTTATAACATCCTTATTAAAGTGTCTGCAAACCACTTCAGACTTTATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258223.3 True 1375 mRNA 0.50 2 57778205 57788035

Neighbor

gene id symbol gene type direction distance location
zbtb25 zbtb25 coding upstream 340190 57433154 ~ 57438015 (+)
LOC103045802 inafm2,LOC106952300,LOC108165849 coding upstream 370812 57405751 ~ 57407393 (+)
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding upstream 493421 57215344 ~ 57284784 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 958769 56767269 ~ 56819436 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding upstream 1012406 56759706 ~ 56765799 (+)
LOC103043365 LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 coding downstream 7357 57795392 ~ 57800871 (+)
LOC103042834 NA coding downstream 60432 57848467 ~ 57855123 (+)
LOC103041704 LOC108424533 coding downstream 71047 57859082 ~ 57875392 (+)
LOC103047227 NA coding downstream 90120 57878155 ~ 57889823 (+)
LOC103041400 si:dkey-85n7.6,LOC103041400,LOC108424448,LOC107659191,LOC107602279 coding downstream 132700 57920735 ~ 57968882 (+)
G28872 NA non-coding upstream 261900 57450210 ~ 57516305 (+)
G28864 NA non-coding upstream 379984 57397948 ~ 57398221 (+)
G28833 NA non-coding upstream 659482 57118496 ~ 57118723 (+)
G28822 NA non-coding upstream 767486 57010477 ~ 57010719 (+)
G28807 NA non-coding upstream 948188 56829621 ~ 56830017 (+)
G28955 NA non-coding downstream 2216 57790251 ~ 57790951 (+)
G29003 NA non-coding downstream 123291 57911326 ~ 57911593 (+)
G29029 LOC108411326,LOC107721373,LOC108257828,LOC107659193 non-coding downstream 272890 58060925 ~ 58076530 (+)
G29036 NA non-coding downstream 327950 58115985 ~ 58119141 (+)
G29040 NA non-coding downstream 339827 58127862 ~ 58128360 (+)
G28865 NA other upstream 375813 57401925 ~ 57402392 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 1072113 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 1324271 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 1466094 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 1538476 56232739 ~ 56239729 (+)
LOC103042006 NA other downstream 14856 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 629359 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 1276438 59064473 ~ 59112315 (+)
G29382 NA other downstream 1432497 59220532 ~ 59221036 (+)
LOC111194375 NA other downstream 1433231 59221266 ~ 59228840 (+)

Expression


Co-expression Network